Mass spectrometric epitope mapping.
暂无分享,去创建一个
M. Glocker | Cornelia Koy | Michael O Glocker | Kwabena F M Opuni | Mahmoud Al-Majdoub | Yelena Yefremova | Reham F El-Kased | K. Opuni | M. Al-Majdoub | C. Koy | Yelena Yefremova | R. El-Kased
[1] J. Mandell,et al. Epitope mapping of a monoclonal antibody against human thrombin by H/D‐exchange mass spectrometry reveals selection of a diverse sequence in a highly conserved protein , 2002, Protein science : a publication of the Protein Society.
[2] B. Roschitzki,et al. Polystyrene beads as an alternative support material for epitope identification of a prion-antibody interaction using proteolytic excision–mass spectrometry , 2009, Analytical and bioanalytical chemistry.
[3] S. Deininger,et al. "Affinity-proteomics": direct protein identification from biological material using mass spectrometric epitope mapping , 2004, Analytical and bioanalytical chemistry.
[4] Saurabh Aggarwal,et al. A survey of breakthrough therapy designations , 2014, Nature Biotechnology.
[5] Danlin Yang,et al. Efficient Qualitative and Quantitative Determination of Antigen-induced Immune Responses* , 2016, The Journal of Biological Chemistry.
[6] A. Lesk,et al. Standard conformations for the canonical structures of immunoglobulins. , 1997, Journal of molecular biology.
[7] S. Meeks,et al. Epitope mapping of inhibitory antibodies targeting the C2 domain of coagulation factor VIII by hydrogen–deuterium exchange mass spectrometry , 2013, Journal of thrombosis and haemostasis : JTH.
[8] R. Aebersold,et al. Mass spectrometry in proteomics. , 2001, Chemical reviews.
[9] C. E. Parker,et al. Fine Definition of the Epitope on the gp41 Glycoprotein of Human Immunodeficiency Virus Type 1 for the Neutralizing Monoclonal Antibody 2F5 , 2001, Journal of Virology.
[10] M. V. Van Regenmortel,et al. What is a B-cell epitope? , 2009, Methods in molecular biology.
[11] B. Ernst,et al. Epitope Structure of the Carbohydrate Recognition Domain of Asialoglycoprotein Receptor to a Monoclonal Antibody Revealed by High-Resolution Proteolytic Excision Mass Spectrometry , 2011, Journal of the American Society for Mass Spectrometry.
[12] H. Dalton,et al. New antigenic regions of streptokinase are identified by affinity-directed mass spectrometry. , 2001, European journal of biochemistry.
[13] K. Tomer,et al. Epitope mapping by proteolysis of antigen-antibody complexes. , 2009, Methods in molecular biology.
[14] E. Kabat. Comparison of invariant residues in the variable and constant regions of human K, human L, and mouse K Bence-Jones proteins. , 1967, Proceedings of the National Academy of Sciences of the United States of America.
[15] P. S. St George-Hyslop,et al. Therapeutically effective antibodies against amyloid-beta peptide target amyloid-beta residues 4-10 and inhibit cytotoxicity and fibrillogenesis. , 2002, Nature medicine.
[16] David E. Clemmer,et al. Ion Mobility Measurements and their Applications to Clusters and Biomolecules , 1997 .
[17] J. Cazzulo,et al. Production and Characterization of Monoclonal Antibodies Against the Major Cysteine Proteinase of Trypanosoma cruzi , 1994, Scandinavian journal of immunology.
[18] A. Konijnenberg,et al. Native ion mobility-mass spectrometry and related methods in structural biology. , 2013, Biochimica et biophysica acta.
[19] K. Tomer,et al. Matrix-assisted laser desorption ionization/mass spectrometry mapping of human immunodeficiency virus-gp120 epitopes recognized by a limited polyclonal antibody , 1998, Journal of the American Society for Mass Spectrometry.
[20] J. Fishpaugh,et al. Epitope mapping and targeted quantitation of the cardiac biomarker troponin by SID‐MRM mass spectrometry , 2014, Proteomics.
[21] C. Robinson,et al. Tandem mass spectrometry reveals the quaternary organization of macromolecular assemblies. , 2006, Chemistry & biology.
[22] K. Tomer,et al. MALDI/MS-based epitope mapping of antigens bound to immobilized antibodies , 2002, Molecular biotechnology.
[23] M. Przybylski,et al. Molecular Recognition Specificity of anti-3-nitrotyrosine Antibodies Revealed by Affinity-Mass Spectrometry and Immunoanalytical Methods , 2008 .
[24] E. Forest,et al. Characterization of an anti‐Borrelia burgdorferi OspA conformational epitope by limited proteolysis of monoclonal antibody‐bound antigen and mass spectrometricpeptide mapping , 2000, Protein science : a publication of the Protein Society.
[25] P. Heeringa,et al. Epitope specificity determines pathogenicity and detectability in ANCA-associated vasculitis. , 2013, The Journal of clinical investigation.
[26] Sergey Lyskov,et al. The RosettaDock server for local protein–protein docking , 2008, Nucleic Acids Res..
[27] J. Ponomarenko,et al. 35 B-CELL EPITOPE PREDICTION , 2008 .
[28] Improving B-cell epitope prediction and its application to global antibody-antigen docking , 2017 .
[29] Y. Shimazaki,et al. Epitope analysis using membrane-immobilized avidin and protein A. , 2012, Protein expression and purification.
[30] K. Downard,et al. Direct identification of protein epitopes by mass spectrometry without immobilization of antibody and isolation of antibody-peptide complexes. , 1999, Analytical chemistry.
[31] S. Zolla-Pazner,et al. Mass Spectrometric Characterization of a Discontinuous Epitope of the HIV Envelope Protein HIV-gp120 Recognized by the Human Monoclonal Antibody 1331A1 , 2000, The Journal of Immunology.
[32] M. Gross,et al. Laser flash photolysis of hydrogen peroxide to oxidize protein solvent-accessible residues on the microsecond timescale , 2005, Journal of the American Society for Mass Spectrometry.
[33] F. Felici,et al. Defining a protective epitope on factor H binding protein, a key meningococcal virulence factor and vaccine antigen , 2013, Proceedings of the National Academy of Sciences.
[34] M. V. Regenmortel,et al. What is a B-cell epitope? , 2009 .
[35] M. Glocker,et al. Characterization of Surface Topology and Binding Area in Complexes of the Elongation Factor Proteins EF‐Ts and EF‐Tu⋅GDP from Thermus thermophilus: A Study by Protein Chemical Modification and Mass Spectrometry , 1998 .
[36] N. Anderson,et al. The Human Plasma Proteome , 2002, Molecular & Cellular Proteomics.
[37] C. Hager-Braun,et al. Determination of protein-derived epitopes by mass spectrometry , 2005, Expert review of proteomics.
[38] T. T. Wu,et al. AN ANALYSIS OF THE SEQUENCES OF THE VARIABLE REGIONS OF BENCE JONES PROTEINS AND MYELOMA LIGHT CHAINS AND THEIR IMPLICATIONS FOR ANTIBODY COMPLEMENTARITY , 1970, The Journal of experimental medicine.
[39] J. Thornton,et al. Continuous and discontinuous protein antigenic determinants , 1986, Nature.
[40] M. Glocker,et al. Facile fabrication and instant application of miniaturized antibody-decorated affinity columns for higher-order structure and functional characterization of TRIM21 epitope peptides. , 2013, Analytical chemistry.
[41] F. Pontén,et al. Antibody-based Proteomics for Human Tissue Profiling , 2005, Molecular & Cellular Proteomics.
[42] B. Roschitzki,et al. Epitope mapping on bovine prion protein using chemical cross-linking and mass spectrometry. , 2008, Journal of mass spectrometry : JMS.
[43] Andrea Sinz,et al. Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein-protein interactions. , 2006, Mass spectrometry reviews.
[44] Jeffrey J. Gray,et al. SnugDock: Paratope Structural Optimization during Antibody-Antigen Docking Compensates for Errors in Antibody Homology Models , 2010, PLoS Comput. Biol..
[45] P. Fay,et al. Use of affinity‐directed liquid chromatography‐mass spectrometry to map the epitopes of a factor VIII inhibitor antibody fraction , 2011, Journal of thrombosis and haemostasis : JTH.
[46] Albert J R Heck,et al. High-resolution mass spectrometry of viral assemblies: Molecular composition and stability of dimorphic hepatitis B virus capsids , 2008, Proceedings of the National Academy of Sciences.
[47] E. Sundberg,et al. Structural basis of antibody-antigen interactions. , 2009, Methods in molecular biology.
[49] Guodong Chen,et al. Hydrogen/deuterium exchange mass spectrometry for probing higher order structure of protein therapeutics: methodology and applications. , 2014, Drug discovery today.
[50] R. Cotter,et al. Mass Spectrometry , 1992, Bio/Technology.
[51] K. Tomer,et al. Epitope mapping of the gastrin‐releasing peptide/anti‐bombesin monoclonal antibody complex by proteolysis followed by matrix‐assisted laser desorption ionization mass spectrometry , 1994, Protein science : a publication of the Protein Society.
[52] M. Emmett,et al. Enhanced digestion efficiency, peptide ionization efficiency, and sequence resolution for protein hydrogen/deuterium exchange monitored by Fourier transform ion cyclotron resonance mass spectrometry. , 2008, Analytical Chemistry.
[53] Dima Kozakov,et al. Application of asymmetric statistical potentials to antibody-protein docking , 2012, Bioinform..
[54] Lihua Huang,et al. Linear epitope mapping by native mass spectrometry. , 2009, Analytical biochemistry.
[55] Sébastien Brier,et al. Two cross‐reactive monoclonal antibodies recognize overlapping epitopes on Neisseria meningitidis factor H binding protein but have different functional properties , 2014, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[56] G. Morris. Epitope Mapping: Identification of Antibody-Binding Sites on Protein Antigens , 1998 .
[57] K. Tomer,et al. A general strategy for epitope mapping by direct MALDI-TOF mass spectrometry using secondary antibodies and cross-linking. , 2001, Analytical chemistry.
[58] M. Przybylski,et al. Mass spectrometric mapping of protein epitope structures of myocardial infarct markers myoglobin and troponin T. , 1996, Biochemistry.
[59] J. Viovy,et al. Epitope mapping of allergen ovalbumin using biofunctionalized magnetic beads packed in microfluidic channels The first step towards epitope-based vaccines. , 2008, Journal of chromatography. A.
[60] Nicola Clementi,et al. Characterization of epitopes recognized by monoclonal antibodies: experimental approaches supported by freely accessible bioinformatic tools. , 2013, Drug discovery today.
[61] M. Glocker,et al. Mass spectrometric and peptide chip characterization of an assembled epitope: analysis of a polyclonal antibody model serum directed against the Sjøgren/systemic lupus erythematosus autoantigen TRIM21. , 2013, Journal of mass spectrometry : JMS.
[62] Debora S. Marks,et al. Protein structure determination by combining sparse NMR data with evolutionary couplings , 2015, Nature Methods.
[63] J. Hobson-Peters,et al. The Chikungunya Virus Capsid Protein Contains Linear B Cell Epitopes in the N- and C-Terminal Regions that are Dependent on an Intact C-Terminus for Antibody Recognition , 2015, Viruses.
[64] M. V. Regenmortel,et al. Specificity, polyspecificity, and heterospecificity of antibody-antigen recognition , 2014 .
[65] M. Baker. Reproducibility crisis: Blame it on the antibodies , 2015, Nature.
[66] S. Cianférani,et al. Towards integrative structural mass spectrometry: Benefits from hybrid approaches. , 2015, Methods.
[67] S. Tuske,et al. Epitope mapping by amide hydrogen/deuterium exchange coupled with immobilization of antibody, on-line proteolysis, liquid chromatography and mass spectrometry. , 2009, Rapid communications in mass spectrometry : RCM.
[68] M. L. Connolly. Solvent-accessible surfaces of proteins and nucleic acids. , 1983, Science.
[69] Søren B. Padkjær,et al. Structural analysis of B-cell epitopes in antibody:protein complexes. , 2013, Molecular immunology.
[70] M. Glocker,et al. A novel strategy for the rapid preparation and isolation of intact immune complexes from peptide mixtures , 2014, Journal of molecular recognition : JMR.
[71] C. Robinson,et al. Subunit Exchange of Multimeric Protein Complexes , 2002, The Journal of Biological Chemistry.
[72] M. Taussig,et al. Generating recombinant antibodies to the complete human proteome. , 2010, Trends in biotechnology.
[73] C. Hager-Braun,et al. The HIV-Neutralizing Monoclonal Antibody 4E10 Recognizes N-Terminal Sequences on the Native Antigen1 , 2006, The Journal of Immunology.
[74] S. Deininger,et al. Molecular characterization of a conformational epitope of hen egg white lysozyme by differential chemical modification of immune complexes and mass spectrometric peptide mapping. , 1998, Bioconjugate chemistry.
[75] Weidong Cui,et al. Mass spectrometry for the biophysical characterization of therapeutic monoclonal antibodies , 2014, FEBS letters.
[76] S. Muyldermans,et al. Epitope structure and binding affinity of single chain llama anti‐β‐amyloid antibodies revealed by proteolytic excision affinity‐mass spectrometry , 2013, Journal of molecular recognition : JMR.
[77] M. Glocker,et al. Mass Spectrometric and Peptide Chip Epitope Mapping of Rheumatoid Arthritis Autoantigen RA33 , 2009, European journal of mass spectrometry.
[78] C. Ansong,et al. Epitope mapping factor VIII A2 domain by affinity‐directed mass spectrometry: residues 497–510 and 584–593 comprise a discontinuous epitope for the monoclonal antibody R8B12 , 2006, Journal of thrombosis and haemostasis : JTH.
[79] M. Wilm. Principles of Electrospray Ionization , 2011, Molecular & Cellular Proteomics.
[80] S. Zolla-Pazner,et al. Characterization of a discontinuous epitope of the HIV envelope protein gp120 recognized by a human monoclonal antibody using chemical modification and mass spectrometric analysis , 2010, Journal of the American Society for Mass Spectrometry.
[81] Gary Walsh,et al. Biopharmaceutical benchmarks 2014 , 2014, Nature Biotechnology.
[82] Qian Zhang,et al. Epitope mapping of a 95 kDa antigen in complex with antibody by solution-phase amide backbone hydrogen/deuterium exchange monitored by Fourier transform ion cyclotron resonance mass spectrometry. , 2011, Analytical chemistry.
[83] K. Tomer,et al. Epitope mapping by differential chemical modification of antigens. , 2009, Methods in molecular biology.
[84] Carsten Grötzinger,et al. Deciphering the Antibodyome - Peptide Arrays for Serum Antibody Biomarker Diagnostics , 2009 .
[85] David R Goodlett,et al. Chemical cross-linking and mass spectrometry as a low-resolution protein structure determination technique. , 2010, Analytical chemistry.
[86] S. Lees-Miller,et al. Nepenthesin from Monkey Cups for Hydrogen/Deuterium Exchange Mass Spectrometry* , 2012, Molecular & Cellular Proteomics.
[87] L. Björck,et al. A physicochemical study of protein G, a molecule with unique immunoglobulin G-binding properties. , 1986, The Journal of biological chemistry.
[88] Xuliang Jiang,et al. Epitope characterization of an anti‐PD‐L1 antibody using orthogonal approaches , 2015, Journal of molecular recognition : JMR.
[89] M. Glocker,et al. Clonality characterization of natural epitope-specific antibodies against the tumor-related antigen topoisomerase IIa by peptide chip and proteome analysis: a pilot study with colorectal carcinoma patient samples , 2012, Analytical and Bioanalytical Chemistry.
[90] M. Gross,et al. Fast Photochemical Oxidation of Proteins (FPOP) Maps the Epitope of EGFR Binding to Adnectin , 2014, Journal of The American Society for Mass Spectrometry.
[91] Qian Zhang,et al. Rapid Screening for Potential Epitopes Reactive with a Polycolonal Antibody by Solution-Phase H/D Exchange Monitored by FT-ICR Mass Spectrometry , 2013, Journal of The American Society for Mass Spectrometry.
[92] P. S. St George-Hyslop,et al. Identification and Structural Characterisation of Carboxy-Terminal Polypeptides and Antibody Epitopes of Alzheimer's Amyloid Precursor Protein Using High-Resolution Mass Spectrometry , 2005, European journal of mass spectrometry.
[93] D. Ecker,et al. The therapeutic monoclonal antibody market , 2015, mAbs.
[94] M. Glocker,et al. Selective biochemical modification of functional residues in recombinant human macrophage colony-stimulating factor beta (rhM-CSF beta): identification by mass spectrometry. , 1996, Biochemistry.
[95] Yingming Zhao,et al. Protein epitope mapping by mass spectrometry. , 1994, Analytical chemistry.
[96] D. Westaway,et al. Therapeutically effective antibodies against amyloid-β peptide target amyloid-β residues 4–10 and inhibit cytotoxicity and fibrillogenesis , 2002, Nature Medicine.
[97] L. Kay,et al. Solution NMR Spectroscopy Provides an Avenue for the Study of Functionally Dynamic Molecular Machines: The Example of Protein Disaggregation. , 2016, Journal of the American Chemical Society.
[98] A. Lewandowska,et al. Identification of the epitope for anti‐cystatin C antibody , 2011, Journal of molecular recognition : JMR.
[99] Peter J. Park,et al. An assessment of histone-modification antibody quality , 2010, Nature Structural &Molecular Biology.
[100] R. Zenobi,et al. Laser‐Assisted Mass Spectrometry , 2014 .
[101] Davy Guillarme,et al. Chromatographic, Electrophoretic, and Mass Spectrometric Methods for the Analytical Characterization of Protein Biopharmaceuticals. , 2016, Analytical chemistry.
[102] L. Sollid,et al. Activity-regulating structural changes and autoantibody epitopes in transglutaminase 2 assessed by hydrogen/deuterium exchange , 2014, Proceedings of the National Academy of Sciences.
[103] T. Wieland,et al. How reliable are G-protein-coupled receptor antibodies? , 2009, Naunyn-Schmiedeberg's Archives of Pharmacology.
[104] C. Parker,et al. Mass Spectrometry for Proteomics , 2010 .
[105] S. Tonegawa,et al. Somatic generation of antibody diversity. , 1976, Nature.
[106] M. Damschroder,et al. Current approaches to fine mapping of antigen–antibody interactions , 2014, Immunology.
[107] H. Bosshard,et al. Mapping of four discontiguous antigenic determinants on horse cytochrome c. , 1989, European journal of biochemistry.
[108] D. Suckau,et al. Molecular epitope identification by limited proteolysis of an immobilized antigen-antibody complex and mass spectrometric peptide mapping. , 1990, Proceedings of the National Academy of Sciences of the United States of America.
[109] R. Jemmerson,et al. Mapping epitopes on a protein antigen by the proteolysis of antigen-antibody complexes. , 1986, Science.
[110] Lihua Huang,et al. Epitope mapping of antibodies by mass spectroscopy: a case study. , 2013, Methods in molecular biology.
[111] T. Jowitt,et al. Identification of a major epitope recognized by PLA2R autoantibodies in primary membranous nephropathy. , 2015, Journal of the American Society of Nephrology : JASN.
[112] M. V. Regenmortel,et al. Mapping Epitope Structure and Activity: From One-Dimensional Prediction to Four-Dimensional Description of Antigenic Specificity , 1996 .
[113] K. Roux,et al. Epitope mapping of 7S cashew antigen in complex with antibody by solution-phase H/D exchange monitored by FT-ICR mass spectrometry. , 2015, Journal of mass spectrometry : JMS.
[114] K. Tomer,et al. Characterization of a discontinuous epitope of the human immunodeficiency virus (HIV) core protein p24 by epitope excision and differential chemical modification followed by mass spectrometric peptide mapping analysis , 2008, Protein science : a publication of the Protein Society.
[115] Zhiwei Cao,et al. Epitope Predictions Indicate the Presence of Two Distinct Types of Epitope-Antibody-Reactivities Determined by Epitope Profiling of Intravenous Immunoglobulins , 2013, PloS one.
[116] M. Gross,et al. Fast photochemical oxidation of proteins for epitope mapping. , 2011, Analytical chemistry.
[117] M. Lehtinen,et al. Synthetic peptides as diagnostic tools in virology. , 1993, Advances in virus research.
[118] M. Przybylski,et al. On-line bioaffinity-electrospray mass spectrometry for simultaneous detection, identification, and quantification of protein-ligand interactions , 2010, Journal of the American Society for Mass Spectrometry.
[119] M. Uhlén,et al. Antibodypedia, a Portal for Sharing Antibody and Antigen Validation Data*S , 2008, Molecular & Cellular Proteomics.
[120] S. Gaskell,et al. Epitope mapping of monoclonal antibodies by mass spectrometry: Identification of protein antigens in complex biological systems , 1998, Journal of the American Society for Mass Spectrometry.
[121] A Novel Mass Spectrometric Epitope Mapping Approach without Immobilization of the Antibody , 2011 .