The elusive structure of Pd2(dba)3. Examination by isotopic labeling, NMR spectroscopy, and X-ray diffraction analysis: synthesis and characterization of Pd2(dba-Z)3 complexes.

Pd(0)2(dba)3 (dba = E,E-dibenzylidene acetone) is the most widely used Pd(0) source in Pd-mediated transformations. Pd(0)2(dba-Z)3 (Z = dba aryl substituents) complexes exhibit remarkable and differential catalytic performance in an eclectic array of cross-coupling reactions. The precise structure of these types of complexes has been confounding, since early studies in 1970s to the present day. In this study the solution and solid-state structures of Pd(0)2(dba)3 and Pd(0)2(dba-Z)3 have been determined. Isotopic labeling ((2)H and (13)C) has allowed the solution structures of the freely exchanging major and minor isomers of Pd(0)2(dba)3 to be determined at high field (700 MHz). DFT calculations support the experimentally determined major and minor isomeric structures, which show that the major isomer of Pd(0)2(dba)3 possesses bridging dba ligands found exclusively in a s-cis,s-trans conformation. For the minor isomer one of the dba ligands is found exclusively in a s-trans,s-trans conformation. Single crystal X-ray diffraction analysis of Pd(0)2(dba)3·CHCl3 (high-quality data) shows that all three dba ligands are found over two positions. NMR spectroscopic analysis of Pd(0)2(dba-Z)3 reveals that the aryl substituent has a profound effect on the rate of Pd-olefin exchange and the global stability of the complexes in solution. Complexes containing the aryl substituents, 4-CF3, 4-F, 4-t-Bu, 4-hexoxy, 4-OMe, exhibit well-resolved (1)H NMR spectra at 298 K, whereas those containing 3,5-OMe and 3,4,5-OMe exhibit broad spectra. The solid-state structures of three Pd(0)2(dba-Z)3 complexes (4-F, 4-OMe, 3,5-OMe) have been determined by single crystal X-ray diffraction methods, which have been compared with Goodson's X-ray structure of Pd(0)2(dba-4-OH)3.

[1]  A. Whitwood,et al.  A remarkable cis- and trans-spanning dibenzylidene acetone diphosphine chelating ligand (dbaphos). , 2013, Chemistry.

[2]  Chun‐hui Xing,et al.  Controlled Pd(0)/t-Bu3P-catalyzed Suzuki cross-coupling polymerization of AB-type monomers with PhPd(t-Bu3P)I or Pd2(dba)3/t-Bu3P/ArI as the initiator. , 2012, Journal of the American Chemical Society.

[3]  V. Ananikov,et al.  Pd2(dba)3 as a Precursor of Soluble Metal Complexes and Nanoparticles: Determination of Palladium Active Species for Catalysis and Synthesis , 2012 .

[4]  S. Buchwald,et al.  Completely N1-selective palladium-catalyzed arylation of unsymmetric imidazoles: application to the synthesis of nilotinib. , 2012, Journal of the American Chemical Society.

[5]  Amanda G. Jarvis and Ian J. S. Fairlamb The Influence of Alkenes as π -Acidic Ligands in Pd-Catalysed Cross-Couplings , 2011 .

[6]  A. Whitwood,et al.  Cu(I) complexes containing a multidentate and conformationally flexible dibenzylidene acetone ligand (dbathiophos): application in catalytic alkene cyclopropanation. , 2011, Dalton transactions.

[7]  S. Franzen Determination of the Solubility Limit of Tris(dibenzylideneacetone) dipalladium(0) in Tetrahydrofuran/Water Mixtures , 2011 .

[8]  S. Denmark,et al.  On the stereochemical course of palladium-catalyzed cross-coupling of allylic silanolate salts with aromatic bromides. , 2010, Journal of the American Chemical Society.

[9]  F. Goodson,et al.  Palladium Complexes with Aqueous-Partitioning Dibenzylideneacetone Ligands. A New Strategy for Catalyst Design in Suzuki Polycondensation Reactions , 2009 .

[10]  A. Whitwood,et al.  Ion-tagged pi-acidic alkene ligands promote Pd-catalysed allyl-aryl couplings in an ionic liquid. , 2009, Chemical communications.

[11]  D. Leonard,et al.  Is Pd2(DBA)3 a Feasible Precursor for the Synthesis of Pd Nanoparticles , 2009 .

[12]  A. Whitwood,et al.  Heteroaromatic Analogues of Dibenzylideneacetone (dba) and Pd02(het-dba)3 Complexes: Effect of a Thienyl Moiety on the Reactivity of Pd0(η2-thn-dba)(PPh3)2/Pd0(PPh3)2 (n = 1 or 2) and Pd0(η2-th2-dba)(dppe)/Pd0(dppe) in Oxidative Addition Reactions with Iodobenzene , 2009 .

[13]  S. Denmark,et al.  Cross-coupling of aromatic bromides with allylic silanolate salts. , 2008, Journal of the American Chemical Society.

[14]  Yingdong Luo,et al.  Investigation of an efficient palladium-catalyzed C(sp)-C(sp) cross-coupling reaction using phosphine-olefin ligand: application and mechanistic aspects. , 2008, Journal of the American Chemical Society.

[15]  I. Fairlamb pi-Acidic alkene ligand effects in Pd-catalysed cross-coupling processes: exploiting the interaction of dibenzylidene acetone (dba) and related ligands with Pd(0) and Pd(II). , 2008, Organic & biomolecular chemistry.

[16]  D. Leonard,et al.  Interfacial and solvent effects govern the formation of tris(dibenzylidenacetone)dipalladium(0) microstructures. , 2008, Langmuir : the ACS journal of surfaces and colloids.

[17]  Rongcai Huang,et al.  An Electron‐Deficient Diene as Ligand for Palladium‐Catalyzed Cross‐Coupling Reactions: An Efficient Alkylation of Aryl Iodides by Primary and Secondary Alkylzinc Reagents , 2008 .

[18]  I. Fairlamb,et al.  Tris(dibenzylideneacetone)dipalladium–Chloroform , 2008 .

[19]  D. Leonard,et al.  The role of selection pressure in RNA-mediated evolutionary materials synthesis. , 2007, Journal of the American Chemical Society.

[20]  A. Duhme-Klair,et al.  A Rationale for the Linear Correlation of Aryl Substituent Effects in Iron(0) Tricarbonyl Complexes Containing α,β-Unsaturated Enone (Chalcone) Ligands , 2007 .

[21]  Qiang Liu,et al.  Superior effect of a pi-acceptor ligand (phosphine-electron-deficient olefin ligand) in the Negishi coupling involving alkylzinc reagents. , 2007, Organic letters.

[22]  G. C. Fu,et al.  Intramolecular Heck reactions of unactivated alkyl halides. , 2007, Journal of the American Chemical Society.

[23]  I. Fairlamb,et al.  In-Silico Prediction of Pd-Catalyzed Cross-Coupling Processes: Dibenzylidene Acetone (dba) Ligand Control , 2007 .

[24]  A. Lee,et al.  Exploiting noninnocent (E,E)-dibenzylideneacetone (dba) effects in palladium(0)-mediated cross-coupling reactions: modulation of the electronic properties of dba affects catalyst activity and stability in ligand and ligand-free reaction systems. , 2006, Chemistry.

[25]  A. Lei,et al.  Oxidative cross-coupling through double transmetallation: surprisingly high selectivity for palladium-catalyzed cross-coupling of alkylzinc and alkynylstannanes. , 2006, Journal of the American Chemical Society.

[26]  Zhenyang Lin,et al.  In-depth insight into metal-alkene bonding interactions , 2006 .

[27]  A. Kapdi,et al.  Influence of the dba Substitution on the Reactivity of Palladium(0) Complexes Generated from Pd02(dba-n,n‘-Z)3 or Pd0(dba-n,n‘-Z)2 and PPh3 in Oxidative Addition with Iodobenzene , 2006 .

[28]  A. Rimola,et al.  Palladium Nanoparticles Entrapped in Heavily Fluorinated Compounds , 2006 .

[29]  V. Beghetto,et al.  Catalytic activity of η2-(olefin)palladium(0) complexes with iminophosphine ligands in the Suzuki-Miyaura reaction. Role of the olefin in the catalyst stabilization , 2005 .

[30]  A. Kapdi,et al.  Eta2-dba complexes of Pd(0): the substituent effect in Suzuki-Miyaura coupling. , 2004, Organic letters.

[31]  R. Paolesse,et al.  Iminophosphine–palladium(0) complexes as highly active catalysts in the Suzuki reaction. Synthesis of undecaaryl substituted corroles , 2004 .

[32]  Filipp Furche,et al.  Nuclear second analytical derivative calculations using auxiliary basis set expansions , 2004 .

[33]  G. C. Fu,et al.  Palladium-catalyzed coupling reactions of aryl chlorides. , 2002, Angewandte Chemie.

[34]  Filipp Furche,et al.  Efficient characterization of stationary points on potential energy surfaces , 2002 .

[35]  Filipp Furche,et al.  An efficient implementation of second analytical derivatives for density functional methods , 2002 .

[36]  R. Pleixats,et al.  Palladium nanoparticles stabilised by polyfluorinated chains. , 2002, Chemical communications.

[37]  M. Moreno-Mañas,et al.  Fluorous Phase Soluble Palladium Nanoparticles as Recoverable Catalysts for Suzuki Cross-Coupling and Heck Reactions , 2001 .

[38]  R. Ahlrichs,et al.  Geometry optimization in generalized natural internal coordinates , 1999 .

[39]  M. Wörle,et al.  PALLADIUM(0) OLEFIN COMPLEXES AND ENANTIOSELECTIVE ALLYLIC AMINATION/ALKYLATION WITH A P, N-AUXILIARY , 1999 .

[40]  C. Amatore,et al.  Role of dba in the Reactivity of Palladium(0) Complexes Generated in situ from Mixtures of Pd(dba)2 and Phosphines , 1998 .

[41]  C. Amatore,et al.  Unexpected bell-shaped effect of the ligand on the rate of the oxidative addition to palladium(0) complexes generated in situ from mixtures of Pd(dba)2 and para-substituted triarylphosphines , 1998 .

[42]  Florian Weigend,et al.  Auxiliary basis sets for main row atoms and transition metals and their use to approximate Coulomb potentials , 1997 .

[43]  Marco Häser,et al.  Auxiliary basis sets to approximate Coulomb potentials , 1995 .

[44]  C. Amatore,et al.  Rates and mechanisms of oxidative addition to zerovalent palladium complexes generated in situ from mixtures of Pd0(dba)2 and triphenylphosphine , 1993 .

[45]  P. Harvey,et al.  Excited-state deactivation mechanisms of the M[sub 2](dba)[sub 3] complexes (M = Pd(0), Pt(0); dba = dibenzylideneacetone) , 1992 .

[46]  Hans W. Horn,et al.  ELECTRONIC STRUCTURE CALCULATIONS ON WORKSTATION COMPUTERS: THE PROGRAM SYSTEM TURBOMOLE , 1989 .

[47]  H. Gray,et al.  Spectroscopic properties of binuclear palladium(0) and platinum(0) dibenzylideneacetone complexes , 1989 .

[48]  Toshio Takahashi,et al.  NMR Studies on Zerovalent Metal π-Complexes of Dibenzylideneacetone. I. Ligand Conformation and bonding in the Binuclear Palladium Complex , 1978 .

[49]  C. Pierpont,et al.  Crystal and molecular structure of tris(dibenzylideneacetone)dipalladium(0) , 1974 .

[50]  J. Ibers,et al.  Chemistry of dibenzylideneacetone-palladium(0) complexes: I. Novel tris(dibenzylideneacetone)dipalladium(solvent) complexes and their reactions with quinones , 1974 .

[51]  C. Pierpont,et al.  Palladium(0) complexes of dibenzylideneacetone. Formation and molecular structure of tris(dibenzylideneacetone)palladium(0) , 1973 .

[52]  Steven P. Breazzano Synthesis and Stereochemical Determination of Complestatins: Development of a Pd(0)-Mediated Indole (Macro)cyclization Reaction , 2013 .

[53]  F. Glorius N-Heterocyclic Carbenes in Catalysis—An Introduction , 2006 .

[54]  R. Ahlrichs,et al.  Efficient molecular numerical integration schemes , 1995 .

[55]  Peter Pulay,et al.  Geometry optimization by direct inversion in the iterative subspace , 1984 .

[56]  Hisao Tanaka,et al.  The conformations and 1H nuclear magnetic resonance parameters of dibenzylideneacetone , 1978 .

[57]  C. Pierpont,et al.  Structure and bonding in tris(dibenzylideneacetone)dipalladium(0) , 1973 .