Transcriptome-wide identification and expression profile analysis of the bHLH family genes in Camellia sinensis

[1]  D. Haak,et al.  Multilevel Regulation of Abiotic Stress Responses in Plants , 2017, Front. Plant Sci..

[2]  J. Zhuang,et al.  Transcriptome-Wide Identification and Expression Analysis of the NAC Gene Family in Tea Plant [Camellia sinensis (L.) O. Kuntze] , 2016, PloS one.

[3]  Ge Gao,et al.  PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants , 2016, Nucleic Acids Res..

[4]  Siyan Liu,et al.  Transcriptome-wide identification and expression profiles of the WRKY transcription factor family in Broomcorn millet (Panicum miliaceum L.) , 2016, BMC Genomics.

[5]  Mingle Wang,et al.  Transcriptomic Analysis Reveals the Molecular Mechanisms of Drought-Stress-Induced Decreases in Camellia sinensis Leaf Quality , 2016, Front. Plant Sci..

[6]  M. Baloğlu,et al.  Genome-wide characterization and expression analysis of common bean bHLH transcription factors in response to excess salt concentration , 2016, Molecular Genetics and Genomics.

[7]  Hui Li,et al.  Identification, classification, and expression profiles of heat shock transcription factors in tea plant (Camellia sinensis) under temperature stress. , 2016, Gene.

[8]  T. Kasuga,et al.  A basic helix-loop-helix transcription factor, PhFBH4, regulates flower senescence by modulating ethylene biosynthesis pathway in petunia , 2015, Horticulture Research.

[9]  T. Ezhova,et al.  ICE genes in Arabidopsis thaliana: clinal variation in DNA polymorphism and sequence diversification , 2015, Biologia Plantarum.

[10]  M. Shimizu,et al.  bHLH106 Integrates Functions of Multiple Genes through Their G-Box to Confer Salt Tolerance on Arabidopsis , 2015, PloS one.

[11]  Shanlei Sun,et al.  Effects of climate change on the economic output of the Longjing-43 tea tree, 1972–2013 , 2015, International Journal of Biometeorology.

[12]  H. Ling,et al.  Genome-wide identification and characterization of the bHLH gene family in tomato , 2015, BMC Genomics.

[13]  Yu Xue,et al.  HemI: A Toolkit for Illustrating Heatmaps , 2014, PloS one.

[14]  J. Zhuang,et al.  De novo assembly and transcriptome characterization: novel insights into catechins biosynthesis in Camellia sinensis , 2014, BMC Plant Biology.

[15]  L. Meinhardt,et al.  Exogenous abscisic acid significantly affects proteome in tea plant (Camellia sinensis) exposed to drought stress , 2014, Horticulture Research.

[16]  Wei Gao,et al.  bHLH122 is important for drought and osmotic stress resistance in Arabidopsis and in the repression of ABA catabolism. , 2014, The New phytologist.

[17]  Jing Ma,et al.  Identification of SSRs and differentially expressed genes in two cultivars of celery (Apium graveolens L.) by deep transcriptome sequencing , 2014, Horticulture Research.

[18]  Y. Li,et al.  Genome-wide analysis of the bHLH transcription factor family in Chinese cabbage (Brassica rapa ssp. pekinensis) , 2014, Molecular Genetics and Genomics.

[19]  Koichiro Tamura,et al.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. , 2013, Molecular biology and evolution.

[20]  Søren Lindemose,et al.  Structure, Function and Networks of Transcription Factors Involved in Abiotic Stress Responses , 2013, International journal of molecular sciences.

[21]  X. Wan,et al.  The R2R3-MYB, bHLH, WD40, and related transcription factors in flavonoid biosynthesis , 2013, Functional & Integrative Genomics.

[22]  M. Thomashow,et al.  Photoperiodic regulation of the C-repeat binding factor (CBF) cold acclimation pathway and freezing tolerance in Arabidopsis thaliana , 2012, Proceedings of the National Academy of Sciences.

[23]  R. Dean,et al.  Accurate discrimination of bHLH domains in plants, animals, and fungi using biologically meaningful sites , 2012, BMC Evolutionary Biology.

[24]  Gokare A. Ravishankar,et al.  Influence of abiotic stress signals on secondary metabolites in plants , 2011, Plant signaling & behavior.

[25]  Xin Gao,et al.  Using OrthoMCL to assign proteins to OrthoMCL-DB groups or to cluster proteomes into new ortholog groups. , 2011, Current protocols in bioinformatics.

[26]  E. Grotewold,et al.  Evolutionary and comparative analysis of MYB and bHLH plant transcription factors. , 2011, The Plant journal : for cell and molecular biology.

[27]  D. Robertson,et al.  Genome-Wide Classification and Evolutionary Analysis of the bHLH Family of Transcription Factors in Arabidopsis, Poplar, Rice, Moss, and Algae1[W] , 2010, Plant Physiology.

[28]  L. Dolan,et al.  Origin and Diversification of Basic-Helix-Loop-Helix Proteins in Plants , 2009, Molecular biology and evolution.

[29]  Ying-xu Chen,et al.  Differentiation of eight tea (Camellia sinensis) cultivars in China by elemental fingerprint of their leaves. , 2009 .

[30]  M. Deyholos,et al.  Functional characterization of the Arabidopsis bHLH92 transcription factor in abiotic stress , 2009, Molecular Genetics and Genomics.

[31]  Toni Gabaldón,et al.  trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses , 2009, Bioinform..

[32]  O. Fursova,et al.  Identification of ICE2, a gene involved in cold acclimation which determines freezing tolerance in Arabidopsis thaliana. , 2009, Gene.

[33]  Sean R. Eddy,et al.  A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation , 2008, PLoS Comput. Biol..

[34]  Rodrigo Lopez,et al.  Clustal W and Clustal X version 2.0 , 2007, Bioinform..

[35]  Hui Shen,et al.  Phytochrome Interacting Factors: central players in phytochrome-mediated light signaling networks. , 2007, Trends in plant science.

[36]  G. Ditta,et al.  The HECATE genes regulate female reproductive tract development in Arabidopsis thaliana , 2007, Development.

[37]  Chuanyou Li,et al.  The bHLH-type transcription factor AtAIB positively regulates ABA response in Arabidopsis , 2007, Plant Molecular Biology.

[38]  C. Dumas,et al.  BIGPETALp, a bHLH transcription factor is involved in the control of Arabidopsis petal size , 2006, The EMBO journal.

[39]  Hong Ma,et al.  Regulation of Arabidopsis tapetum development and function by DYSFUNCTIONAL TAPETUM1 (DYT1) encoding a putative bHLH transcription factor , 2006, Development.

[40]  Jian-Kang Zhu,et al.  The Arabidopsis Cold-Responsive Transcriptome and Its Regulation by ICE1w⃞ , 2005, The Plant Cell Online.

[41]  E. Minami,et al.  Involvement of the Basic Helix-Loop-Helix Transcription Factor RERJ1 in Wounding and Drought Stress Responses in Rice Plants , 2005, Bioscience, biotechnology, and biochemistry.

[42]  A. Roeder,et al.  Control of Fruit Patterning in Arabidopsis by INDEHISCENT , 2004, Cell.

[43]  Bernd Weisshaar,et al.  Update on the Basic Helix-Loop-Helix Transcription Factor Gene Family in Arabidopsis thaliana , 2003, The Plant Cell Online.

[44]  C. Fankhauser,et al.  HFR1, a putative bHLH transcription factor, mediates both phytochrome A and cryptochrome signalling. , 2003, The Plant journal : for cell and molecular biology.

[45]  P. Bailey,et al.  The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. , 2003, Molecular biology and evolution.

[46]  Jian-Kang Zhu,et al.  ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis. , 2003, Genes & development.

[47]  J. Ecker,et al.  Three redundant brassinosteroid early response genes encode putative bHLH transcription factors required for normal growth. , 2002, Genetics.

[48]  V. Sundaresan,et al.  The Arabidopsis myc/bHLH gene ALCATRAZ enables cell separation in fruit dehiscence , 2001, Current Biology.

[49]  W. Sakamoto,et al.  The Purple leaf (Pl) locus of rice: the Pl(w) allele has a complex organization and includes two genes encoding basic helix-loop-helix proteins involved in anthocyanin biosynthesis. , 2001, Plant & cell physiology.

[50]  M. Vervoort,et al.  The basic helix-loop-helix protein family: comparative genomics and phylogenetic analysis. , 2001, Genome research.

[51]  J Kyozuka,et al.  The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development. , 2001, Developmental biology.

[52]  S. J. Gilmour,et al.  Overexpression of the Arabidopsis CBF3 transcriptional activator mimics multiple biochemical changes associated with cold acclimation. , 2000, Plant physiology.

[53]  J. Riechmann,et al.  A genomic perspective on plant transcription factors. , 2000, Current opinion in plant biology.

[54]  William R. Atchley,et al.  Positional Dependence, Cliques, and Predictive Motifs in the bHLH Protein Domain , 1999, Journal of Molecular Evolution.

[55]  K. Shinozaki,et al.  Role of arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. , 1997, The Plant cell.

[56]  W. Atchley,et al.  A natural classification of the basic helix-loop-helix class of transcription factors. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[57]  J. Mol,et al.  Regulatory Genes Controlling Anthocyanin Pigmentation Are Functionally Conserved among Plant Species and Have Distinct Sets of Target Genes. , 1993, The Plant cell.

[58]  E. Coen,et al.  A common gene regulates pigmentation pattern in diverse plant species , 1992, Cell.

[59]  S. Wessler,et al.  Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[60]  David Baltimore,et al.  A new DNA binding and dimerization motif in immunoglobulin enhancer binding, daughterless, MyoD, and myc proteins , 1989, Cell.

[61]  Yu Wang,et al.  CsICE1 and CsCBF1: two transcription factors involved in cold responses in Camellia sinensis , 2011, Plant Cell Reports.

[62]  A. Alzohairy.  BioEdit: An important software for molecular biology , 2011 .

[63]  T. Yoshizumi,et al.  RETARDED GROWTH OF EMBRYO 1 , a New Basic Helix-Loop-Helix Protein , Expresses in Endosperm to Control Embryo Growth 1 [ W ] , 2008 .

[64]  BIOINFORMATICS APPLICATIONS NOTE , 2005 .

[65]  R. Fantechi.  Effects Of Climate Change , 1993 .

[66]  Thomas D. Schmittgen,et al.  Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2 2 DD C T Method , 2022 .