Predicting antibiotic resistance
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[1] P. Collignon,et al. Evolution of multi-resistance plasmids in Australian clinical isolates of Escherichia coli. , 2004, Microbiology.
[2] F. Baquero,et al. Acquisition of antibiotic resistance plasmids in vivo by extraintestinal Salmonella spp. , 1987, The Journal of antimicrobial chemotherapy.
[3] Jehoshua Bruck,et al. 2020 Computing: Can computers help to explain biology? , 2006, Nature.
[4] Barbara Di Ventura,et al. From in vivo to in silico biology and back , 2006, Nature.
[5] Jianping Xu,et al. INVITED REVIEW: Microbial ecology in the age of genomics and metagenomics: concepts, tools, and recent advances , 2006, Molecular ecology.
[6] M. Maciá,et al. Efficacy and Potential for Resistance Selection of Antipseudomonal Treatments in a Mouse Model of Lung Infection by Hypermutable Pseudomonas aeruginosa , 2006, Antimicrobial Agents and Chemotherapy.
[7] S. Falkow,et al. Bile-salt-mediated induction of antimicrobial and bile resistance in Salmonella typhimurium. , 2004, Microbiology.
[8] P. Bork,et al. Genome evolution reveals biochemical networks and functional modules , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[9] J. Frère,et al. Postgenomic Scan of Metallo-β-Lactamase Homologues in Rhizobacteria: Identification and Characterization of BJP-1, a Subclass B3 Ortholog from Bradyrhizobium japonicum , 2006, Antimicrobial Agents and Chemotherapy.
[10] J. Shapiro. A 21st century view of evolution: genome system architecture, repetitive DNA, and natural genetic engineering. , 2005, Gene.
[11] Ulf Dieckmann,et al. Surprising evolutionary predictions from enhanced ecological realism. , 2006, Theoretical population biology.
[12] P Stoodley,et al. Survival strategies of infectious biofilms. , 2005, Trends in microbiology.
[13] D. Vos,et al. Metronidazole resistance in Helicobacter pylori , 1990, The Lancet.
[14] O. Berg,et al. Mutation frequency and biological cost of antibiotic resistance in Helicobacter pylori , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[15] J. Pepper. The evolution of evolvability in genetic linkage patterns. , 2003, Bio Systems.
[16] J. Buer,et al. Expression Analysis of a Highly Adherent and Cytotoxic Small Colony Variant of Pseudomonas aeruginosa Isolated from a Lung of a Patient with Cystic Fibrosis , 2004, Journal of bacteriology.
[17] Karin A Remington,et al. Taking metagenomic studies in context. , 2005, Trends in microbiology.
[18] E. Denamur,et al. In Brief , 2006, Nature Reviews Microbiology.
[19] F. Baquero,et al. hns mutant unveils the presence of a latent haemolytic activity in Escherichia coli K‐12 , 1996, Molecular microbiology.
[20] Gerard D. Wright. The antibiotic resistome: the nexus of chemical and genetic diversity , 2007, Nature Reviews Microbiology.
[21] T. Walsh. Combinatorial genetic evolution of multiresistance. , 2006, Current opinion in microbiology.
[22] John W. Beaber,et al. SOS response promotes horizontal dissemination of antibiotic resistance genes , 2004, Nature.
[23] O. Berg,et al. Effects of environment on compensatory mutations to ameliorate costs of antibiotic resistance. , 2000, Science.
[24] D. Hughes,et al. Sampling the Antibiotic Resistome , 2006, Science.
[25] S. Leibler,et al. Bacterial Persistence , 2005, Genetics.
[26] I. Wiegand,et al. β-Lactamase induction and cell wall recycling in gram-negative bacteria , 1998 .
[27] S. Salipante,et al. GeneHunter, a Transposon Tool for Identification and Isolation of Cryptic Antibiotic Resistance Genes , 2003, Antimicrobial Agents and Chemotherapy.
[28] Jake Yue Chen,et al. A Systems Biology Approach to the Study of cisplatin Drug Resistance in Ovarian cancers , 2007, J. Bioinform. Comput. Biol..
[29] A. Robicsek,et al. Fluoroquinolone-modifying enzyme: a new adaptation of a common aminoglycoside acetyltransferase , 2006, Nature Medicine.
[30] Miriam Barlow,et al. Predicting evolutionary potential: in vitro evolution accurately reproduces natural evolution of the tem beta-lactamase. , 2002, Genetics.
[31] I. Matic,et al. Environmental tuning of mutation rates. , 2006, Environmental microbiology.
[32] W. Dunne,et al. Use of Several Inducer and Substrate Antibiotic Combinations in a Disk Approximation Assay Format To Screen for AmpC Induction in Patient Isolates of Pseudomonas aeruginosa, Enterobacter spp., Citrobacter spp., and Serratia spp , 2005, Journal of Clinical Microbiology.
[33] D. Andersson,et al. Antibiotic treatment in vitro of phenotypically tolerant bacterial populations. , 2007, The Journal of antimicrobial chemotherapy.
[34] A. Danchin. The bag or the spindle: the cell factory at the time of systems' biology , 2004, Microbial cell factories.
[35] F. Baquero,et al. RESISTANCE TO BETA-LACTAM/CLAVULANATE , 1987, The Lancet.
[36] Ariane Toussaint,et al. Mobile elements as a combination of functional modules. , 2002, Plasmid.
[37] F. Baquero,et al. Mutation Frequencies and Antibiotic Resistance , 2000, Antimicrobial Agents and Chemotherapy.
[38] B. Spratt,et al. Role of interspecies transfer of chromosomal genes in the evolution of penicillin resistance in pathogenic and commensal Neisseria species , 1992, Journal of Molecular Evolution.
[39] O. Sahin,et al. Enhanced in vivo fitness of fluoroquinolone-resistant Campylobacter jejuni in the absence of antibiotic selection pressure. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[40] D. Andersson,et al. Persistence of antibiotic resistant bacteria. , 2003, Current opinion in microbiology.
[41] F. Baquero,et al. Haemophilus influenzae bla ROB-1 Mutations in Hypermutagenic ΔampC Escherichia coli Conferring Resistance to Cefotaxime and β-Lactamase Inhibitors and Increased Susceptibility to Cefaclor , 2003, Antimicrobial Agents and Chemotherapy.
[42] Maria J. Gomez,et al. Genes Involved in Intrinsic Antibiotic Resistance of Acinetobacter baylyi , 2006, Antimicrobial Agents and Chemotherapy.
[43] U. Dieckmann,et al. The evolution of phenotypic plasticity in spatially structured environments: implications of intraspecific competition, plasticity costs and environmental characteristics , 2004, Journal of evolutionary biology.
[44] A. Robicsek,et al. Prevalence in the United States of aac(6′)-Ib-cr Encoding a Ciprofloxacin-Modifying Enzyme , 2006, Antimicrobial Agents and Chemotherapy.
[45] R. Lande,et al. On the distribution of the mean and variance of a quantitative trait under mutation-selection-drift balance. , 1994, Genetics.
[46] B. Levin,et al. Non-inherited antibiotic resistance , 2006, Nature Reviews Microbiology.
[47] J. Hearst,et al. Genes acrA and acrB encode a stress‐induced efflux system of Escherichia coli , 1995, Molecular microbiology.
[48] P. Collignon,et al. Species differences in plasmid carriage in the Enterobacteriaceae. , 2003, Plasmid.
[49] G. Wagner,et al. The topology of the possible: formal spaces underlying patterns of evolutionary change. , 2001, Journal of theoretical biology.
[50] E. Andrianantoandro,et al. Synthetic biology: new engineering rules for an emerging discipline , 2006, Molecular systems biology.
[51] B. Levin,et al. The biological cost of antibiotic resistance. , 1999, Current opinion in microbiology.
[52] Robert T. Pennock,et al. The evolutionary origin of complex features , 2003, Nature.
[53] T. Richmond,et al. Mutation discovery in bacterial genomes: metronidazole resistance in Helicobacter pylori , 2005, Nature Methods.
[54] Andreas Handel,et al. The Role of Compensatory Mutations in the Emergence of Drug Resistance , 2006, PLoS Comput. Biol..
[55] C. Fishwick,et al. Analysis of Mupirocin Resistance and Fitness in Staphylococcus aureus by Molecular Genetic and Structural Modeling Techniques , 2004, Antimicrobial Agents and Chemotherapy.
[56] A. Tomasz,et al. Beta-Lactam antibiotic resistance in gram-positive bacterial pathogens of the upper respiratory tract: a brief overview of mechanisms. , 1995, Microbial drug resistance.
[57] C. Fishwick,et al. Molecular Genetic and Structural Modeling Studies of Staphylococcus aureus RNA Polymerase and the Fitness of Rifampin Resistance Genotypes in Relation to Clinical Prevalence , 2006, Antimicrobial Agents and Chemotherapy.
[58] J. Davies,et al. Origins, acquisition and dissemination of antibiotic resistance determinants. , 1997, Ciba Foundation symposium.
[59] D. Andersson. The biological cost of mutational antibiotic resistance: any practical conclusions? , 2006, Current opinion in microbiology.
[60] W. L. Payne,et al. High Mutation Frequencies Among Escherichia coli and Salmonella Pathogens , 1996, Science.
[61] J. Roth,et al. Origin of mutations under selection: the adaptive mutation controversy. , 2006, Annual review of microbiology.
[62] B. Levin,et al. Concentration-Dependent Selection of Small Phenotypic Differences in TEM β-Lactamase-Mediated Antibiotic Resistance , 2000, Antimicrobial Agents and Chemotherapy.
[63] J. Costerton,et al. Antibiotic resistance of bacteria in biofilms , 2001, The Lancet.
[64] A. Cloeckaert,et al. Overexpression of the Multidrug Efflux Operon acrEF by Insertional Activation with IS1 or IS10 Elements in Salmonella enterica Serovar Typhimurium DT204 acrB Mutants Selected with Fluoroquinolones , 2005, Antimicrobial Agents and Chemotherapy.
[65] Claudia Schmidt-Dannert,et al. Dealing with complexity: evolutionary engineering and genome shuffling. , 2004, Current opinion in biotechnology.
[66] Barry G. Hall,et al. Predicting Evolution by In Vitro Evolution Requires Determining Evolutionary Pathways , 2002, Antimicrobial Agents and Chemotherapy.
[67] Fernando Baquero,et al. Interactions among Strategies Associated with Bacterial Infection: Pathogenicity, Epidemicity, and Antibiotic Resistance , 2002, Clinical Microbiology Reviews.
[68] Thijs J. G. Ettema,et al. Modularity in the gain and loss of genes: applications for function prediction. , 2001, Trends in genetics : TIG.
[69] J. Roth,et al. Multiple pathways of selected gene amplification during adaptive mutation , 2006, Proceedings of the National Academy of Sciences.
[70] N. Datta,et al. Plasmids of the same Inc groups in Enterobacteria before and after the medical use of antibiotics , 1983, Nature.
[71] Fernando Baquero,et al. Selection of Naturally Occurring Extended-Spectrum TEM β-Lactamase Variants by Fluctuating β-Lactam Pressure , 2000, Antimicrobial Agents and Chemotherapy.
[72] Barry G. Hall,et al. Predicting the evolution of antibiotic resistance genes , 2004, Nature Reviews Microbiology.
[73] Barry G. Hall,et al. Evolution of the serine β-lactamases: past, present and future , 2004 .
[74] A. Alonso,et al. Environmental selection of antibiotic resistance genes. , 2001, Environmental microbiology.
[75] Yipeng Wang,et al. Selective Silencing of Foreign DNA with Low GC Content by the H-NS Protein in Salmonella , 2006, Science.
[76] A. Oliver,et al. High frequency of hypermutable Pseudomonas aeruginosa in cystic fibrosis lung infection. , 2000, Science.
[77] F. Baquero. From pieces to patterns: evolutionary engineering in bacterial pathogens , 2004, Nature Reviews Microbiology.
[78] F. Baquero,et al. Beta-lactam-fosfomycin antagonism involving modification of penicillin-binding protein 3 in Pseudomonas aeruginosa , 1990, Antimicrobial Agents and Chemotherapy.
[79] Peter L Lee,et al. The SOS response regulates adaptive mutation. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[80] U. Alon,et al. Spontaneous evolution of modularity and network motifs. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[81] H. Ceri,et al. The Calgary Biofilm Device: New Technology for Rapid Determination of Antibiotic Susceptibilities of Bacterial Biofilms , 1999, Journal of Clinical Microbiology.
[82] B. Hall,et al. Experimental prediction of the evolution of cefepime resistance from the CMY-2 AmpC beta-lactamase. , 2003, Genetics.
[83] C. Dorman. H-NS: a universal regulator for a dynamic genome , 2004, Nature Reviews Microbiology.
[84] G. Archer,et al. Related Clones Containing SCCmec Type IV Predominate among Clinically Significant Staphylococcus epidermidis Isolates , 2003, Antimicrobial Agents and Chemotherapy.
[85] V. Souza,et al. Bacteria gone native vs. bacteria gone awry?: plasmidic transfer and bacterial evolution. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[86] A. Oliver,et al. Hypermutation Is a Key Factor in Development of Multiple-Antimicrobial Resistance in Pseudomonas aeruginosa Strains Causing Chronic Lung Infections , 2005, Antimicrobial Agents and Chemotherapy.
[87] F. Baquero,et al. Polymorphic Mutation Frequencies in Escherichia coli: Emergence of Weak Mutators in Clinical Isolates , 2004, Journal of bacteriology.
[88] F. Baquero. Low-level antibacterial resistance: a gateway to clinical resistance. , 2001, Drug resistance updates : reviews and commentaries in antimicrobial and anticancer chemotherapy.
[89] J. Handelsman. Metagenomics: Application of Genomics to Uncultured Microorganisms , 2004, Microbiology and Molecular Biology Reviews.
[90] F. Baquero,et al. H-NS and RpoS regulate emergence of Lac Ara+ mutants of Escherichia coli MCS2 , 1997, Journal of bacteriology.
[91] Valeria Souza,et al. Stress-Induced Mutagenesis in Bacteria , 2003, Science.
[92] P. Bennett,et al. Evidence of Antibiotic Resistance Gene Silencing in Escherichia coli , 2006, Antimicrobial Agents and Chemotherapy.
[93] Michael Lynch,et al. The Origin of Subfunctions and Modular Gene Regulation , 2005, Genetics.
[94] J. Hinton. H-NS mediates the silencing of laterally acquired genes in bacteria (vol 2, pg 746, 2006) , 2007 .
[95] Miriam Barlow,et al. Experimental prediction of the natural evolution of antibiotic resistance. , 2003, Genetics.
[96] J. Costerton,et al. Bacterial biofilms: a common cause of persistent infections. , 1999, Science.
[97] F. Taddei,et al. Highly variable mutation rates in commensal and pathogenic Escherichia coli. , 1997, Science.
[98] I. Matic,et al. Environmental tuning of mutation rates: Environmental tuning of mutation rates , 2006 .
[99] F. Baquero,et al. Fosfomycin and Rifampin Disk Diffusion Tests for Detection of Escherichia coli Mutator Strains , 2004, Journal of Clinical Microbiology.
[100] M. Maciá,et al. Detection and Susceptibility Testing of Hypermutable Pseudomonas aeruginosa Strains with the Etest and Disk Diffusion , 2004, Antimicrobial Agents and Chemotherapy.
[101] R. Skurray,et al. Regulation of Bacterial Drug Export Systems , 2002, Microbiology and Molecular Biology Reviews.