Helicogenicity of solvents in the conformational equilibrium of oligo(m-phenylene ethynylene)s: Implications for foldamer research

A (R)-binaphthol tethered bis-hexameric oligo(m-phenylene ethynylene) foldamer was examined in 30 solvents to correlate the unfolded–folded conformational equilibrium to bulk solvent properties and specific solvent–chain interactions. The oligomer is soluble in a variety of solvents of intermediate polarity, with the majority of these solvents being helicogenic. The amphiphilic nature of the chain allows the solvophobic backbone to be solubilized in a wide range of solvents through the polar triethylene glycol side chains. As demonstrated through UV and CD spectroscopic experiments, the helical conformation is increasingly stabilized with increasing solvent polarity in the absence of specific solvent–chain interactions. Surprisingly, very few solvents are capable of fully denaturing the helix, indicating the strength of the solvophobic driving forces in this cooperative system. The folding reaction for this amphiphilic oligomer can be described as a compromise in solubility properties, where chains collapse intramolecularly into helical conformations to minimize solvent–backbone contacts while maintaining favorable solvent–side chain interactions for solvation. In terms of mimicking the properties of biomacromolecules, foldamers using solvophobic driving forces must be tempered with functionalities that promote solubility of the folded state while at the same time allowing access to the unfolded state through the use of denaturants.

[1]  K. Dill Dominant forces in protein folding. , 1990, Biochemistry.

[2]  W. Kauzmann Some factors in the interpretation of protein denaturation. , 1959, Advances in protein chemistry.

[3]  J. Gajewski A semitheoretical multiparameter approach to correlate solvent effects on reactions and equilibria , 1992 .

[4]  J. Schellman A simple model for solvation in mixed solvents. Applications to the stabilization and destabilization of macromolecular structures. , 1990, Biophysical chemistry.

[5]  R. Biltonen,et al.  Validity of the “two‐state” hypothesis for conformational transitions of proteins , 1966, Biopolymers.

[6]  Thirumalai,et al.  Minimum energy compact structures of random sequences of heteropolymers. , 1993, Physical review letters.

[7]  Moore,et al.  Conformational ordering of apolar, chiral m-phenylene ethynylene oligomers , 2000, Organic letters.

[8]  C. Pace Determination and analysis of urea and guanidine hydrochloride denaturation curves. , 1986, Methods in enzymology.

[9]  ARTHUR CAMMERS,et al.  Three-State, Conformational Probe for Hydrophobic, π-Stacking Interactions in Aqueous and Mixed Aqueous Solvent Systems: Anisotropic Solvation of Aromatic Rings , 2000 .

[10]  Jen-Tsi Yang,et al.  Two-Point Calibration of Circular Dichrometer with d-10-Camphorsulfonic Acid , 1977 .

[11]  D. Yee,et al.  Principles of protein folding — A perspective from simple exact models , 1995, Protein science : a publication of the Protein Society.

[12]  H. Kagechika,et al.  N-Methylated Diphenylguanidines: Conformations, Propeller-Type Molecular Chirality, and Construction of Water-Soluble Oligomers with Multilayered Aromatic Structures , 1998 .

[13]  Jeffery G. Saven,et al.  Cooperative Conformational Transitions in Phenylene Ethynylene Oligomers: Chain-Length Dependence , 1999 .

[14]  Takashi Okada,et al.  Controlling the secondary structure of nonbiological oligomers with solvophobic and coordination interactions , 1999 .

[15]  C. Reichardt Solvents and Solvent Effects in Organic Chemistry , 1988 .

[16]  Alison Rodger,et al.  Circular Dichroism and Linear Dichroism , 1997 .

[17]  E. W. Meijer,et al.  Self-assembly of folded m-phenylene ethynylene oligomers into helical columns. , 2001, Journal of the American Chemical Society.

[18]  Jeffrey S. Moore,et al.  Solvophobically Driven π-Stacking of Phenylene Ethynylene Macrocycles and Oligomers , 2000 .

[19]  Synthesis and chiroptical properties of optically active, regioregular oligothiophenes. , 2001, Organic letters.

[20]  Jeffrey S. Moore,et al.  Hexagonal Packing of Oligo(m-phenylene ethynylene)s in the Solid State: Helical Nanotubules , 2000 .

[21]  H. Kuball Circular Dichroism and Linear Dichroism , 1999 .

[22]  Y. Umezawa,et al.  The CH/π interaction : evidence, nature, and consequences , 1998 .

[23]  S. Kitagawa,et al.  Solvent effect on helicity induction of zinc bilinone bearing a chiral auxiliary at the helix terminal. , 2001, The Journal of organic chemistry.

[24]  Jeffrey S. Moore,et al.  Foldamer-Based Molecular Recognition , 2000 .

[25]  Samuel Zalipsky,et al.  Poly(ethylene glycol): Chemistry and Biological Applications , 1997 .

[26]  Matthew J. Mio,et al.  A field guide to foldamers. , 2001, Chemical reviews.

[27]  J. Lehn,et al.  Helical molecular programming: supramolecular double helices by dimerization of helical oligopyridine-dicarboxamide strands. , 2001, Chemistry.

[28]  B. Iverson,et al.  (1)H NMR investigation of solvent effects in aromatic stacking interactions. , 2001, Journal of the American Chemical Society.

[29]  Jeffrey S. Moore,et al.  HELICAL BIAS IN SOLVOPHOBICALLY FOLDED OLIGO(PHENYLENE ETHYNYLENE)S , 1999 .

[30]  D. Kemp,et al.  Mechanism of Stabilization of Helical Conformations of Polypeptides by Water Containing Trifluoroethanol , 1996 .

[31]  N. Ohta,et al.  Estimating absorption bands of component dyes by means of principal component analysis , 1973 .

[32]  W. C. Johnson,et al.  Circular dichroism and its empirical application to biopolymers. , 1985, Methods of biochemical analysis.

[33]  U. Lüning Chr. Reichardt: Solvents and Solvent Effects in Organic Chemistry, second, completely revised and enlarged edition, VCH Verlagsgesellschaft, Weinheim, Basel, Cambridge, New York 1988. 534 Seiten, Preis: DM 148,–. , 1989 .

[34]  J S Moore,et al.  Solvophobically driven folding of nonbiological oligomers. , 1997, Science.

[35]  J. Lehn,et al.  Helical molecular programming: folding of oligopyridine-dicarboxamides into molecular single helices. , 2001, Chemistry.

[36]  Samuel H. Gellman,et al.  Foldamers: A Manifesto , 1998 .