TIM genes: a family of cell surface phosphatidylserine receptors that regulate innate and adaptive immunity

Summary:  The TIM (T cell/transmembrane, immunoglobulin, and mucin) gene family plays a critical role in regulating immune responses, including allergy, asthma, transplant tolerance, autoimmunity, and the response to viral infections. The unique structure of TIM immunoglobulin variable region domains allows highly specific recognition of phosphatidylserine (PtdSer), exposed on the surface of apoptotic cells. TIM‐1, TIM‐3, and TIM‐4 all recognize PtdSer but differ in expression, suggesting that they have distinct functions in regulating immune responses. TIM‐1, an important susceptibility gene for asthma and allergy, is preferentially expressed on T‐helper 2 (Th2) cells and functions as a potent costimulatory molecule for T‐cell activation. TIM‐3 is preferentially expressed on Th1 and Tc1 cells, and generates an inhibitory signal resulting in apoptosis of Th1 and Tc1 cells. TIM‐3 is also expressed on some dendritic cells and can mediate phagocytosis of apoptotic cells and cross‐presentation of antigen. In contrast, TIM‐4 is exclusively expressed on antigen‐presenting cells, where it mediates phagocytosis of apoptotic cells and plays an important role in maintaining tolerance. TIM molecules thus provide a functional repertoire for recognition of apoptotic cells, which determines whether apoptotic cell recognition leads to immune activation or tolerance, depending on the TIM molecule engaged and the cell type on which it is expressed.

[1]  Y. Gong,et al.  A Functional Polymorphism in the TIM-1 Gene Is Associated with Asthma in a Chinese Han Population , 2007, International Archives of Allergy and Immunology.

[2]  David H. Lee,et al.  T‐bet, a Th1 transcription factor regulates the expression of Tim‐3 , 2010, European journal of immunology.

[3]  Y. Gong,et al.  Absence of association between two insertion/deletion coding genetic polymorphisms of TIM‐1 gene and asthma in Chinese Han population , 2006, International journal of immunogenetics.

[4]  T. Arinami,et al.  Insertion/deletion coding polymorphisms in hHAVcr-1 are not associated with atopic asthma in the Japanese population , 2003, Genes and Immunity.

[5]  K. Ravichandran,et al.  Phagocytic Signaling: You Can Touch, but You Can't Eat , 2008, Current Biology.

[6]  A. Minagar,et al.  The role of macrophage/microglia and astrocytes in the pathogenesis of three neurologic disorders: HIV-associated dementia, Alzheimer disease, and multiple sclerosis , 2002, Journal of the Neurological Sciences.

[7]  D. Weiner,et al.  Anti-T-cell Ig and mucin domain-containing protein 1 antibody decreases TH2 airway inflammation in a mouse model of asthma. , 2005, The Journal of allergy and clinical immunology.

[8]  P. Cai,et al.  Association analysis of TIM-1 -232G > A and 5383_5397 insertion/deletion polymorphisms with childhood asthma and total serum immunoglobulin E levels in middle China. , 2009, Journal of investigational allergology & clinical immunology.

[9]  L. Turka,et al.  The emerging role of T cell Ig mucin 1 in alloimmune responses in an experimental mouse transplant model. , 2008, The Journal of clinical investigation.

[10]  M. Scott,et al.  Human TIM-1 Associates with the TCR Complex and Up-Regulates T Cell Activation Signals , 2007, The Journal of Immunology.

[11]  Gerhard Wagner,et al.  Structure of a Heterophilic Adhesion Complex between the Human CD2 and CD58 (LFA-3) Counterreceptors , 1999, Cell.

[12]  J. Bonventre,et al.  Shedding of Kidney Injury Molecule-1, a Putative Adhesion Protein Involved in Renal Regeneration* , 2002, The Journal of Biological Chemistry.

[13]  G. Freeman,et al.  Structures of T cell immunoglobulin mucin protein 4 show a metal-Ion-dependent ligand binding site where phosphatidylserine binds. , 2007, Immunity.

[14]  P. Thompson,et al.  Identification of a surface glycoprotein on African green monkey kidney cells as a receptor for hepatitis A virus. , 1996, The EMBO journal.

[15]  L. Kane,et al.  T cell Ig and mucin 1 (TIM-1) is expressed on in vivo-activated T cells and provides a costimulatory signal for T cell activation. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[16]  M. Potter,et al.  Susceptibility of BALB/c mice carrying various DBA/2 genes to development of Friend murine leukemia virus-induced erythroleukemia , 1985, The Journal of experimental medicine.

[17]  S. Nakae,et al.  TIM-1 and TIM-3 enhancement of Th2 cytokine production by mast cells. , 2007, Blood.

[18]  Yuan Zhang,et al.  The Human Homolog of HAVcr-1 Codes for a Hepatitis A Virus Cellular Receptor , 1998, Journal of Virology.

[19]  F. Brodsky,et al.  TIM-2 is expressed on B cells and in liver and kidney and is a receptor for H-ferritin endocytosis , 2005, The Journal of experimental medicine.

[20]  N. Risch,et al.  Hepatitis A virus link to atopic disease , 2003 .

[21]  G. Freeman,et al.  T Cell/Transmembrane, Ig, and Mucin-3 Allelic Variants Differentially Recognize Phosphatidylserine and Mediate Phagocytosis of Apoptotic Cells , 2010, The Journal of Immunology.

[22]  R. Gold,et al.  Phagocytosis of apoptotic inflammatory cells by microglia and its therapeutic implications: Termination of CNS autoimmune inflammation and modulation by interferon‐beta , 2003, Glia.

[23]  R. Scott,et al.  Phagocytosis and clearance of apoptotic cells is mediated by MER , 2001, Nature.

[24]  T. Spector,et al.  Novel association suggests multiple independent QTLs within chromosome 5q21–33 region control variation in total humans IgE levels , 2003, Genes and Immunity.

[25]  David E. Anderson,et al.  TIM‐3 is expressed on activated human CD4+ T cells and regulates Th1 and Th17 cytokines , 2009, European journal of immunology.

[26]  K. Murphy,et al.  Evidence for carbohydrate recognition and homotypic and heterotypic binding by the TIM family. , 2007, International immunology.

[27]  S. Nagata,et al.  Identification of Tim4 as a phosphatidylserine receptor , 2007, Nature.

[28]  Sambasiva P Rao,et al.  Epitope-Dependent Effect of Anti-Murine TIM-1 Monoclonal Antibodies on T Cell Activity and Lung Immune Responses , 2007, The Journal of Immunology.

[29]  H. Kikutani,et al.  Immune semaphorins: a new area of semaphorin research , 2003, Journal of Cell Science.

[30]  S. Korsmeyer,et al.  Cell Death in Development , 1999, Cell.

[31]  Tatyana Chernova,et al.  Th1-specific cell surface protein Tim-3 regulates macrophage activation and severity of an autoimmune disease , 2002, Nature.

[32]  T. Niki,et al.  Blood diffusion and Th1-suppressive effects of galectin-9-containing exosomes released by Epstein-Barr virus-infected nasopharyngeal carcinoma cells. , 2009, Blood.

[33]  G. Freeman,et al.  TIM-1 and TIM-4 glycoproteins bind phosphatidylserine and mediate uptake of apoptotic cells. , 2007, Immunity.

[34]  T. Niki,et al.  Galectin-9 Significantly Prolongs the Survival of Fully Mismatched Cardiac Allografts in Mice , 2009, Transplantation.

[35]  V. Kuchroo,et al.  The costimulatory role of TIM molecules , 2009, Immunological reviews.

[36]  G. Freeman,et al.  The TIM gene family: emerging roles in immunity and disease , 2003, Nature Reviews Immunology.

[37]  J. Bellmunt,et al.  Hepatitis A virus receptor blocks cell differentiation and is overexpressed in clear cell renal cell carcinoma. , 2004, Kidney international.

[38]  T. Niki,et al.  Galectin-9 Is a High Affinity IgE-binding Lectin with Anti-allergic Effect by Blocking IgE-Antigen Complex Formation , 2009, The Journal of Biological Chemistry.

[39]  G. Berry,et al.  TIM-1 induces T cell activation and inhibits the development of peripheral tolerance , 2005, Nature Immunology.

[40]  John Savill,et al.  A blast from the past: clearance of apoptotic cells regulates immune responses , 2002, Nature Reviews Immunology.

[41]  D. Fruman,et al.  T Cell Ig and Mucin Domain-1-Mediated T Cell Activation Requires Recruitment and Activation of Phosphoinositide 3-Kinase1 , 2008, The Journal of Immunology.

[42]  J. Casasnovas,et al.  Structures of T Cell Immunoglobulin Mucin Receptors 1 and 2 Reveal Mechanisms for Regulation of Immune Responses by the TIM Receptor Family , 2007, Immunity.

[43]  T. Niki,et al.  Stable form of galectin-9, a Tim-3 ligand, inhibits contact hypersensitivity and psoriatic reactions: a potent therapeutic tool for Th1- and/or Th17-mediated skin inflammation. , 2009, Clinical immunology.

[44]  John Savill,et al.  Corpse clearance defines the meaning of cell death , 2000, Nature.

[45]  G. Barsh,et al.  Identification of Tapr (an airway hyperreactivity regulatory locus) and the linked Tim gene family , 2001, Nature Immunology.

[46]  J. Bonventre,et al.  Kidney Injury Molecule-1 (KIM-1): a novel biomarker for human renal proximal tubule injury. , 2002, Kidney international.

[47]  G. Freeman,et al.  Targeting Tim-1 to overcome resistance to transplantation tolerance mediated by CD8 T17 cells , 2009, Proceedings of the National Academy of Sciences.

[48]  S. Sakoda,et al.  Class IV semaphorin Sema4A enhances T-cell activation and interacts with Tim-2 , 2002, Nature.

[49]  P. Williamson,et al.  Mechanisms of phosphatidylserine exposure, a phagocyte recognition signal, on apoptotic T lymphocytes , 1995, The Journal of experimental medicine.

[50]  T. Beaty,et al.  Genetic variants of the T-cell immunoglobulin mucin 1 but not the T-cell immunoglobulin mucin 3 gene are associated with asthma in an African American population. , 2005, The Journal of allergy and clinical immunology.

[51]  C. Langford,et al.  Molecular analysis of tumor-promoting CD8+ T cells in two-stage cutaneous chemical carcinogenesis. , 2010, The Journal of investigative dermatology.

[52]  K. Takeda,et al.  Tim-3 mediates phagocytosis of apoptotic cells and cross-presentation. , 2009, Blood.

[53]  V. Kuchroo,et al.  Mapping and identification of autoimmunity genes. , 2000, Current opinion in immunology.

[54]  E. Silbergeld,et al.  Cutting Edge: T Cell Ig Mucin-3 Reduces Inflammatory Heart Disease by Increasing CTLA-4 during Innate Immunity1 , 2006, The Journal of Immunology.

[55]  Stefano Iacobelli,et al.  Galectins and their ligands: amplifiers, silencers or tuners of the inflammatory response? , 2002, Trends in immunology.

[56]  V. Kuchroo,et al.  Immunostimulatory Tim-1-specific antibody deprograms Tregs and prevents transplant tolerance in mice. , 2008, The Journal of clinical investigation.

[57]  D. Umetsu,et al.  TIM-1, a novel allergy and asthma susceptibility gene , 2004, Springer Seminars in Immunopathology.

[58]  G. Stewart,et al.  Genetic Association Studies between the T Cell Immunoglobulin Mucin (TIM) Gene Locus and Childhood Atopic Dermatitis , 2006, International Archives of Allergy and Immunology.

[59]  V. Fadok,et al.  Phagocyte receptors for apoptotic cells: recognition, uptake, and consequences. , 2001, The Journal of clinical investigation.

[60]  F. Winkler,et al.  X‐ray structure of junctional adhesion molecule: structural basis for homophilic adhesion via a novel dimerization motif , 2001, The EMBO journal.

[61]  V. Kuchroo,et al.  Tim-3 inhibits T helper type 1–mediated auto- and alloimmune responses and promotes immunological tolerance , 2003, Nature Immunology.

[62]  Steven C Almo,et al.  T cell immunoglobulin mucin-3 crystal structure reveals a galectin-9-independent ligand-binding surface. , 2007, Immunity.

[63]  S. Shim,et al.  The exon 4 variations of Tim-1 gene are associated with rheumatoid arthritis in a Korean population. , 2004, Biochemical and biophysical research communications.

[64]  P. Taylor,et al.  A Hierarchical Role for Classical Pathway Complement Proteins in the Clearance of Apoptotic Cells in Vivo , 2000, The Journal of experimental medicine.

[65]  Sarah J. McMillan,et al.  Th2-driven, allergen-induced airway inflammation is reduced after treatment with anti–Tim-3 antibody in vivo , 2007, The Journal of experimental medicine.

[66]  S. Nedospasov,et al.  SMUCKLER/TIM4 is a distinct member of TIM family expressed by stromal cells of secondary lymphoid tissues and associated with lymphotoxin signaling , 2004, European journal of immunology.

[67]  Ping-Chang Yang,et al.  TIM-4 expressed by mucosal dendritic cells plays a critical role in food antigen-specific Th2 differentiation and intestinal allergy. , 2007, Gastroenterology.

[68]  S. Nagata,et al.  Autoimmune Disease and Impaired Uptake of Apoptotic Cells in MFG-E8-Deficient Mice , 2004, Science.

[69]  V. Siroux,et al.  Association of atopy and eczema with polymorphisms in T-cell immunoglobulin domain and mucin domain-IL-2-inducible T-cell kinase gene cluster in chromosome 5 q 33. , 2005, The Journal of allergy and clinical immunology.

[70]  G. Freeman,et al.  Interaction of Tim-3 and Tim-3 ligand regulates T helper type 1 responses and induction of peripheral tolerance , 2003, Nature Immunology.

[71]  David E. Anderson,et al.  Promotion of Tissue Inflammation by the Immune Receptor Tim-3 Expressed on Innate Immune Cells , 2007, Science.

[72]  V. Kuchroo,et al.  TIM-4 is the ligand for TIM-1, and the TIM-1–TIM-4 interaction regulates T cell proliferation , 2005, Nature Immunology.

[73]  L. Kane,et al.  TIM-1 and TIM-3 proteins in immune regulation. , 2008, Cytokine.

[74]  K. Ravichandran,et al.  The Phosphatidylserine Receptor TIM-4 Does Not Mediate Direct Signaling , 2009, Current Biology.

[75]  Pier Paolo Pandolfi,et al.  Homozygous C1q deficiency causes glomerulonephritis associated with multiple apoptotic bodies , 1998, Nature Genetics.

[76]  M. Loda,et al.  Human kidney injury molecule-1 is a tissue and urinary tumor marker of renal cell carcinoma. , 2005, Journal of the American Society of Nephrology : JASN.

[77]  G. Freeman,et al.  Immunoglobulin A (IgA) Is a Natural Ligand of Hepatitis A Virus Cellular Receptor 1 (HAVCR1), and the Association of IgA with HAVCR1 Enhances Virus-Receptor Interactions , 2007, Journal of Virology.

[78]  David I. Stuart,et al.  Crystal structure at 2.8 Å resolution of a soluble form of the cell adhesion molecule CD2 , 1992, Nature.

[79]  V. Kuchroo,et al.  The Tim-3 ligand galectin-9 negatively regulates T helper type 1 immunity , 2005, Nature Immunology.

[80]  S. Galli,et al.  Phenotypic differences between Th1 and Th17 cells and negative regulation of Th1 cell differentiation by IL‐17 , 2007, Journal of leukocyte biology.

[81]  C. Théry,et al.  Membrane vesicles as conveyors of immune responses , 2009, Nature Reviews Immunology.

[82]  S. Nagata,et al.  Apoptosis by Death Factor , 1997, Cell.

[83]  B. McMahon,et al.  Negative Immune Regulator Tim-3 Is Overexpressed on T Cells in Hepatitis C Virus Infection and Its Blockade Rescues Dysfunctional CD4+ and CD8+ T Cells , 2009, Journal of Virology.

[84]  S. Shim,et al.  The polymorphisms of Tim-1 promoter region are associated with rheumatoid arthritis in a Korean population , 2004, Immunogenetics.

[85]  A. Fomina,et al.  T cell exosomes induce cholesterol accumulation in human monocytes via phosphatidylserine receptor , 2007, Journal of cellular physiology.

[86]  R. Kaul,et al.  Tim-3 expression defines a novel population of dysfunctional T cells with highly elevated frequencies in progressive HIV-1 infection , 2008, The Journal of experimental medicine.

[87]  P. Matricardi,et al.  Cross sectional retrospective study of prevalence of atopy among Italian military students with antibodies against hepatitis a virus , 1997, BMJ.

[88]  J. Bonventre,et al.  T Cell, Ig Domain, Mucin Domain-2 Gene-Deficient Mice Reveal a Novel Mechanism for the Regulation of Th2 Immune Responses and Airway Inflammation1 , 2006, The Journal of Immunology.

[89]  G. Freeman,et al.  Reinvigorating exhausted HIV-specific T cells via PD-1–PD-1 ligand blockade , 2006, The Journal of experimental medicine.

[90]  T. Niki,et al.  Galectin-9 suppresses the generation of Th17, promotes the induction of regulatory T cells, and regulates experimental autoimmune arthritis. , 2008, Clinical immunology.

[91]  R. Moss,et al.  Vaccination with cell immunoglobulin mucin-1 antibodies and inactivated influenza enhances vaccine-specific lymphocyte proliferation, interferon-gamma production and cross-strain reactivity. , 2006, Clinical and experimental immunology.

[92]  D. Hafler,et al.  TIM-4 Expressed on APCs Induces T Cell Expansion and Survival1 , 2008, The Journal of Immunology.

[93]  J. Israelachvili,et al.  Role of lipid interactions in autoimmune demyelination. , 2004, Biochimica et biophysica acta.

[94]  C. Baecher-Allan,et al.  T Cell Ig- and Mucin-Domain-Containing Molecule-3 (TIM-3) and TIM-1 Molecules Are Differentially Expressed on Human Th1 and Th2 Cells and in Cerebrospinal Fluid-Derived Mononuclear Cells in Multiple Sclerosis1 , 2004, The Journal of Immunology.

[95]  T. Niki,et al.  Galectin-9 inhibits CD44-hyaluronan interaction and suppresses a murine model of allergic asthma. , 2007, American journal of respiratory and critical care medicine.

[96]  Joseph V Bonventre,et al.  Kidney injury molecule-1 is a phosphatidylserine receptor that confers a phagocytic phenotype on epithelial cells. , 2008, The Journal of clinical investigation.

[97]  V. Kuchroo,et al.  Tim-2 regulates T helper type 2 responses and autoimmunity , 2005, The Journal of experimental medicine.

[98]  Soichi Wakatsuki,et al.  Structural analysis of the recognition mechanism of poly-N-acetyllactosamine by the human galectin-9 N-terminal carbohydrate recognition domain. , 2008, Glycobiology.

[99]  Jin Yuan,et al.  Activation of Tim-3-Galectin-9 pathway improves survival of fully allogeneic skin grafts. , 2008, Transplant immunology.

[100]  David E. Anderson,et al.  Dysregulated T cell expression of TIM3 in multiple sclerosis , 2006, The Journal of experimental medicine.

[101]  L. Kane,et al.  Cutting Edge: Inhibition of T Cell Activation by TIM-21 , 2006, The Journal of Immunology.

[102]  Joseph V. Bonventre,et al.  Kidney Injury Molecule-1 (KIM-1), a Putative Epithelial Cell Adhesion Molecule Containing a Novel Immunoglobulin Domain, Is Up-regulated in Renal Cells after Injury* , 1998, The Journal of Biological Chemistry.

[103]  Hun-taeg Chung,et al.  The association of the exon 4 variations of Tim-1 gene with allergic diseases in a Korean population. , 2003, Biochemical and biophysical research communications.

[104]  V. Fadok,et al.  Exposure of phosphatidylserine on the surface of apoptotic lymphocytes triggers specific recognition and removal by macrophages. , 1992, Journal of immunology.

[105]  Jian-min Wu,et al.  [Study on relationship between polymorphism sites of TIM-3 and allergic asthma in a population of adult Hans from Hubei province of China]. , 2006, Zhonghua yi xue yi chuan xue za zhi = Zhonghua yixue yichuanxue zazhi = Chinese journal of medical genetics.

[106]  S. Bonini,et al.  Hay fever and asthma in relation to markers of infection in the United States. , 2002, The Journal of allergy and clinical immunology.

[107]  S. Cusack,et al.  Dimeric structure of the coxsackievirus and adenovirus receptor D1 domain at 1.7 A resolution. , 2000, Structure.

[108]  G. Dranoff,et al.  Milk fat globule epidermal growth factor–8 blockade triggers tumor destruction through coordinated cell-autonomous and immune-mediated mechanisms , 2009, The Journal of experimental medicine.

[109]  Kazuhiro Suzuki,et al.  Bimodal regulation of T cell-mediated immune responses by TIM-4. , 2008, International immunology.

[110]  V. Kuchroo,et al.  Differential engagement of Tim-1 during activation can positively or negatively costimulate T cell expansion and effector function , 2007, The Journal of experimental medicine.

[111]  J. D. Neely,et al.  Linkage analysis of IL4 and other chromosome 5q31.1 markers and total serum immunoglobulin E concentrations. , 1994, Science.