Optimal charge-shaping functions for the particle–particle—particle–mesh (P3M) method for computing electrostatic interactions in molecular simulations

The application of the particle–particle—particle–mesh (P3M) method for computing electrostatic interactions in molecular simulations relies on the use of a charge-shaping function to split the potential into two contributions, evaluated in real and reciprocal space, respectively. Although the charge-shaping function is traditionally taken to be a Gaussian, many other choices are possible. In the present study, we investigate the accuracy of the P3M method employing, as charge-shaping functions, polynomials truncated to a finite spacial range (TP functions). We first discuss and test analytical estimates of the P3M root-mean-square force error for both types of shaping functions. These estimates are then used to find the optimal values of the free parameters defining the two types of charge-shaping function (width of the Gaussian or coefficients of the TP function). Finally, we compare the accuracy properties of these optimized functions, using both analytical estimates and numerical results for a model i...

[1]  T. Darden,et al.  Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems , 1993 .

[2]  J. Mccammon,et al.  Effect of artificial periodicity in simulations of biomolecules under Ewald boundary conditions: a continuum electrostatics study. , 1999, Biophysical chemistry.

[3]  T. Darden,et al.  A smooth particle mesh Ewald method , 1995 .

[4]  J. Mccammon,et al.  Ewald artifacts in computer simulations of ionic solvation and ion–ion interaction: A continuum electrostatics study , 1999 .

[5]  B. U. Felderhof Wigner solids and diffusion controlled reactions in a regular array of spheres , 1985 .

[6]  Wilfred F. van Gunsteren,et al.  Calculating Electrostatic Interactions Using the Particle−Particle Particle−Mesh Method with Nonperiodic Long-Range Interactions , 1996 .

[7]  J. Mccammon,et al.  Molecular Dynamics Simulations of a Polyalanine Octapeptide under Ewald Boundary Conditions: Influence of Artificial Periodicity on Peptide Conformation , 2000 .

[8]  M. Deserno,et al.  HOW TO MESH UP EWALD SUMS. II. AN ACCURATE ERROR ESTIMATE FOR THE PARTICLE-PARTICLE-PARTICLE-MESH ALGORITHM , 1998, cond-mat/9807100.

[9]  H. G. Petersen Accuracy and efficiency of the particle mesh Ewald method , 1995 .

[10]  J. Perram,et al.  Cutoff Errors in the Ewald Summation Formulae for Point Charge Systems , 1992 .

[11]  T. Ruijgrok,et al.  On the energy per particle in three- and two-dimensional Wigner lattices , 1988 .

[12]  P. P. Ewald Die Berechnung optischer und elektrostatischer Gitterpotentiale , 1921 .

[13]  Christian Holm,et al.  How to Mesh up Ewald Sums , 2000 .

[14]  B. Montgomery Pettitt,et al.  Ewald artifacts in liquid state molecular dynamics simulations , 1996 .

[15]  Eugene P. Wigner,et al.  Effects of the Electron Interaction on the Energy Levels of Electrons in Metals , 1938 .

[16]  B. Pettitt,et al.  On the Presence of Rotational Ewald Artifacts in the Equilibrium and Dynamical Properties of a Zwitterionic Tetrapeptide in Aqueous Solution , 1997 .

[17]  Jim Glosli,et al.  Comments on P3M, FMM, and the Ewald method for large periodic Coulombic systems , 1996 .

[18]  Christian Holm,et al.  How to mesh up Ewald sums. I. A theoretical and numerical comparison of various particle mesh routines , 1998 .