Detecting the dormant: a review of recent advances in molecular techniques for assessing the viability of bacterial endospores
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[1] S. Anderson,et al. Assessment of EIB: What you need to know to optimize test results. , 2013, Immunology and allergy clinics of North America.
[2] Kasthuri Venkateswaran,et al. New perspectives on viable microbial communities in low-biomass cleanroom environments , 2012, The ISME Journal.
[3] B. Mohapatra,et al. Rapid detection of viable Bacillus pumilus SAFR-032 encapsulated spores using novel propidium monoazide-linked fluorescence in situ hybridization. , 2012, Journal of microbiological methods.
[4] S. Scherer,et al. Bacillus kochii sp. nov., isolated from foods and a pharmaceuticals manufacturing site. , 2012, International journal of systematic and evolutionary microbiology.
[5] N. A. Logan,et al. Bacillus and relatives in foodborne illness , 2012, Journal of applied microbiology.
[6] K. Venkateswaran,et al. A molecular method to assess bioburden embedded within silicon-based resins used on modern spacecraft materials , 2012, International Journal of Astrobiology.
[7] M. T. La Duc,et al. Evaluation of fluorescence in situ hybridization to detect encapsulated Bacillus pumilus SAFR‐032 spores released from poly(methylmethacrylate) , 2012, Microbiology and immunology.
[8] E. Raber,et al. Rapid-Viability PCR Method for Detection of Live, Virulent Bacillus anthracis in Environmental Samples , 2011, Applied and Environmental Microbiology.
[9] D. Paredes-Sabja,et al. Germination of spores of Bacillales and Clostridiales species: mechanisms and proteins involved. , 2011, Trends in microbiology.
[10] S. Ryoo,et al. Paenibacillus sputi sp. nov., isolated from the sputum of a patient with pulmonary disease. , 2010, International journal of systematic and evolutionary microbiology.
[11] Sandhya U. Parshionikar,et al. Use of Propidium Monoazide in Reverse Transcriptase PCR To Distinguish between Infectious and Noninfectious Enteric Viruses in Water Samples , 2010, Applied and Environmental Microbiology.
[12] J. Held,et al. Paenibacillus larvae Bacteremia in Injection Drug Users , 2010, Emerging infectious diseases.
[13] T. Pinto,et al. The bacterial diversity of pharmaceutical clean rooms analyzed by the Fatty Acid methyl ester technique. , 2010, PDA journal of pharmaceutical science and technology.
[14] E. Varughese,et al. Cryptosporidium Propidium Monoazide-PCR, a Molecular Biology-Based Technique for Genotyping of Viable Cryptosporidium Oocysts , 2009, Applied and Environmental Microbiology.
[15] T. Bauer,et al. Improving clinical significance of PCR: Use of propidium monoazide to distinguish viable from dead staphylococcus aureus and staphylococcus epidermidis , 2009, Journal of orthopaedic research : official publication of the Orthopaedic Research Society.
[16] A. Ponce,et al. Rapid Endospore Viability Assay of Clostridium sporogenes spores. , 2009, International journal of food microbiology.
[17] C. Dock,et al. PCR-Based Method Using Propidium Monoazide To Distinguish Viable from Nonviable Bacillus subtilis Spores , 2009, Applied and Environmental Microbiology.
[18] E. Raber,et al. Rapid, high-throughput, culture-based PCR methods to analyze samples for viable spores of Bacillus anthracis and its surrogates. , 2009, Journal of microbiological methods.
[19] I. Poilane,et al. New trends in Clostridium difficile virulence and pathogenesis. , 2009, International journal of antimicrobial agents.
[20] P. Setlow,et al. Analysis of dye binding by and membrane potential in spores of Bacillus species , 2009, Journal of applied microbiology.
[21] A. Nocker,et al. Selective detection of live bacteria combining propidium monoazide sample treatment with microarray technology. , 2009, Journal of microbiological methods.
[22] J. Ho,et al. Rapid detection of germinating Bacillus cereus cells using fluorescent in situ hybridization. , 2009 .
[23] B. La Scola,et al. Nucleic acids as viability markers for bacteria detection using molecular tools. , 2009, Future microbiology.
[24] A. Ponce,et al. Production and characterization of pure Clostridium spore suspensions , 2009, Journal of applied microbiology.
[25] J Anderson,et al. Differentiation of live‐viable versus dead bacterial endospores by calibrated hyperspectral reflectance microscopy , 2008, Journal of microscopy.
[26] G. Rogers,et al. Assessing the diagnostic importance of nonviable bacterial cells in respiratory infections. , 2008, Diagnostic microbiology and infectious disease.
[27] M. Pincus,et al. Case report: Paenibacillus thiaminolyticus: a new cause of human infection, inducing bacteremia in a patient on hemodialysis. , 2008, Annals of clinical and laboratory science.
[28] K. Ko,et al. Paenibacillus konsidensis sp. nov., isolated from a patient. , 2008, International journal of systematic and evolutionary microbiology.
[29] Y. Waché,et al. Fluorescent probes to evaluate the physiological state and activity of microbial biocatalysts: A guide for prokaryotic and eukaryotic investigation , 2008, Biotechnology journal.
[30] L. Curtis,et al. Prevention of hospital-acquired infections: review of non-pharmacological interventions , 2008, Journal of Hospital Infection.
[31] E. Raber,et al. Most-probable-number rapid viability PCR method to detect viable spores of Bacillus anthracis in swab samples. , 2008, Journal of microbiological methods.
[32] R. Amann,et al. Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques , 2008, Nature Reviews Microbiology.
[33] D. Raoult,et al. Paenibacillus provencensis sp. nov., isolated from human cerebrospinal fluid, and Paenibacillus urinalis sp. nov., isolated from human urine. , 2008, International journal of systematic and evolutionary microbiology.
[34] S. Vesper,et al. Quantifying fungal viability in air and water samples using quantitative PCR after treatment with propidium monoazide (PMA). , 2008, Journal of microbiological methods.
[35] D. Knorr,et al. Flow cytometric assessment of Bacillus spore response to high pressure and heat , 2007 .
[36] A. Henriques,et al. Structure, assembly, and function of the spore surface layers. , 2007, Annual review of microbiology.
[37] G. Weinstock,et al. Paradoxical DNA Repair and Peroxide Resistance Gene Conservation in Bacillus pumilus SAFR-032 , 2007, PloS one.
[38] M. Nei,et al. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. , 2007, Molecular biology and evolution.
[39] A. Nocker,et al. Use of Propidium Monoazide for Live/Dead Distinction in Microbial Ecology , 2007, Applied and Environmental Microbiology.
[40] E. Ghelardi,et al. Bacillus thuringiensis pulmonary infection: critical role for bacterial membrane-damaging toxins and host neutrophils. , 2007, Microbes and infection.
[41] P. Setlow. I will survive: DNA protection in bacterial spores. , 2007, Trends in microbiology.
[42] H. Morgan,et al. Removal of contaminating DNA from polymerase chain reaction using ethidium monoazide. , 2007, Journal of microbiological methods.
[43] K. Venkateswaran,et al. Isolation and Characterization of Bacteria Capable of Tolerating the Extreme Conditions of Clean Room Environments , 2007, Applied and Environmental Microbiology.
[44] A. Ponce,et al. Quantification of viable endospores from a Greenland ice core. , 2007, FEMS microbiology ecology.
[45] P. Setlow,et al. Analysis of factors influencing the rate of germination of spores of Bacillus subtilis by very high pressure , 2007, Journal of applied microbiology.
[46] D. Titěra,et al. Diagnosis of American foulbrood in honey bees: a synthesis and proposed analytical protocols , 2006, Letters in applied microbiology.
[47] A. Ponce,et al. Applications of a Rapid Endospore Viability Assay for Monitoring UV Inactivation and Characterizing Arctic Ice Cores , 2006, Applied and Environmental Microbiology.
[48] J. Ho,et al. Flow Cytometry Sorting Protocol of Bacillus Spore Using Ultraviolet Laser and Autofluorescence as Main Sorting Criterion , 2006, Journal of Fluorescence.
[49] P. Setlow. Spores of Bacillus subtilis: their resistance to and killing by radiation, heat and chemicals , 2006, Journal of applied microbiology.
[50] A. Moir,et al. How do spores germinate? , 2006, Journal of applied microbiology.
[51] S. Demos,et al. Imaging of tissue microstructures using a multimodal microscope design , 2005, IEEE Journal of Selected Topics in Quantum Electronics.
[52] R. Tanner,et al. Survival of Spacecraft-Associated Microorganisms under Simulated Martian UV Irradiation , 2005, Applied and Environmental Microbiology.
[53] R. Blodgett. Serial dilution with a confirmation step , 2005 .
[54] P. Setlow,et al. Factors Influencing Germination of Bacillus subtilis Spores via Activation of Nutrient Receptors by High Pressure , 2005, Applied and Environmental Microbiology.
[55] S. Giglio,et al. Nucleic acid amplification-based techniques for pathogen detection and identification , 2005, Infection, Genetics and Evolution.
[56] Fei Chen,et al. Recurrent isolation of hydrogen peroxide-resistant spores of Bacillus pumilus from a spacecraft assembly facility. , 2005, Astrobiology.
[57] Caroline Duchaine,et al. Autofluorescence as a viability marker for detection of bacterial spores. , 2005, Frontiers in bioscience : a journal and virtual library.
[58] J. Oliver. The viable but nonculturable state in bacteria. , 2005, Journal of microbiology.
[59] J. Ho,et al. Flow cytometry analysis of germinating Bacillus spores, using membrane potential dye , 2005, Archives of Microbiology.
[60] S. Stocks. Mechanism and use of the commercially available viability stain, BacLight , 2004, Cytometry. Part A : the journal of the International Society for Analytical Cytology.
[61] Richard A Montagna,et al. A rapid biosensor for viable B. anthracis spores , 2004, Analytical and bioanalytical chemistry.
[62] R. A. Deininger,et al. A rapid screening method for the detection of viable spores in powder using bioluminescence. , 2004, Luminescence : the journal of biological and chemical luminescence.
[63] N. Zou,et al. Presence of Bacterial Phage-Like DNA Sequences in Commercial Taq DNA Polymerase Reagents , 2004, Journal of Clinical Microbiology.
[64] D. Raoult,et al. Systematic 16S rRNA Gene Sequencing of Atypical Clinical Isolates Identified 27 New Bacterial Species Associated with Humans , 2004, Journal of Clinical Microbiology.
[65] C. Laflamme,et al. Assessment of bacterial endospore viability with fluorescent dyes , 2004, Journal of applied microbiology.
[66] Kouichiro Tsuge,et al. Sensitive detection of bacteria and spores using a portable bioluminescence ATP measurement assay system distinguishing from white powder materials , 2004 .
[67] K. Venkateswaran,et al. Microbial Monitoring of Spacecraft and Associated Environments , 2004, Microbial Ecology.
[68] W. Nicholson,et al. Extreme Spore UV Resistance of Bacillus pumilus Isolates Obtained from an Ultraclean Spacecraft Assembly Facility , 2004, Microbial Ecology.
[69] Kasthuri Venkateswaran,et al. ATP as a biomarker of viable microorganisms in clean-room facilities. , 2003, Journal of microbiological methods.
[70] K. Yuen,et al. Pseudobacteraemia in a patient with neutropenic fever caused by a novel paenibacillus species: Paenibacillus hongkongensis sp. nov. , 2003, Molecular pathology : MP.
[71] D. Dassey,et al. Botulism Due to Clostridium baratii Type F Toxin , 2002, Journal of Clinical Microbiology.
[72] C. E. Dawson,et al. A comparison of nucleic acid amplification techniques for the assessment of bacterial viability , 2001, Letters in applied microbiology.
[73] I. Poxton,et al. The pathogenicity of Clostridium difficile. , 2001, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.
[74] Thomas D. Nielsen,et al. Hyperspectral imaging: a novel approach for microscopic analysis. , 2001, Cytometry.
[75] L. Peterson,et al. Paenibacillus macerans pseudobacteremia resulting from contaminated blood culture bottles in a neonatal intensive care unit. , 2001, American journal of infection control.
[76] M. Watve,et al. Oligophilic Bacteria as Tools To Monitor Aseptic Pharmaceutical Production Units , 2001, Applied and Environmental Microbiology.
[77] C. Besch-Williford,et al. Prolonged perturbations of tumour necrosis factor-α and interferon-γ in mice inoculated with Clostridium piliforme , 2000 .
[78] K. Lounatmaa,et al. Epidemiology and pathogenesis of Bacillus cereus infections. , 2000, Microbes and infection.
[79] J. Ezzell,et al. The capsule of Bacillus anthracis, a review , 1999, Journal of applied microbiology.
[80] R. Desjardins,et al. LIVE/DEAD BacLight : application of a new rapid staining method for direct enumeration of viable and total bacteria in drinking water. , 1999, Journal of microbiological methods.
[81] K. Takahashi,et al. Bacterial contamination in the environment of food factories processing ready-to-eat fresh vegetables. , 1999, Journal of food protection.
[82] Teresa C. Horan,et al. Guideline for Prevention of Surgical Site Infection, 1999 , 1999, Infection Control & Hospital Epidemiology.
[83] A. Driks. Bacillus subtilis Spore Coat , 1999, Microbiology and Molecular Biology Reviews.
[84] Stephens,et al. Assessment of bacterial viability status by flow cytometry and single cell sorting , 1998, Journal of applied microbiology.
[85] D B Kell,et al. Rapid identification of urinary tract infection bacteria using hyperspectral whole-organism fingerprinting and artificial neural networks. , 1998, Microbiology.
[86] M. Klein,et al. Bacillus popilliae and Bacillus lentimorbus, bacteria causing milky disease in Japanese beetles and related scarab larvae , 1998 .
[87] B. Mackey,et al. Detection of mRNA by Reverse Transcription-PCR as an Indicator of Viability in Escherichia coliCells , 1998, Applied and Environmental Microbiology.
[88] R. López-Amorós,et al. Assessment of E. coli and Salmonella viability and starvation by confocal laser microscopy and flow cytometry using rhodamine 123, DiBAC4(3), propidium iodide, and CTC. , 1997, Cytometry.
[89] J. Fuhrman,et al. Determination of Active Marine Bacterioplankton: a Comparison of Universal 16S rRNA Probes, Autoradiography, and Nucleoid Staining , 1997, Applied and environmental microbiology.
[90] K. Komagata,et al. Emended description of Paenibacillus amylolyticus and description of Paenibacillus illinoisensis sp. nov. and Paenibacillus chibensis sp. nov. , 1997, International journal of systematic bacteriology.
[91] B. Karrasch,et al. Toxic effects on bacterial metabolism of the redox dye 5-cyano-2,3-ditolyl tetrazolium chloride , 1996, Applied and environmental microbiology.
[92] H. Kodaka,et al. Adenosine Triphosphate Content of Microorganisms Related with Food Spoilage , 1996 .
[93] J. Schwartz,et al. Bacillus thuringiensis CryIA(a) insecticidal toxin: crystal structure and channel formation. , 1995, Journal of molecular biology.
[94] F. Bert,et al. Brain abscess due to Bacillus macerans following a penetrating periorbital injury , 1995, Journal of clinical microbiology.
[95] K. Schleifer,et al. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. , 1995, Microbiological reviews.
[96] C. Edwards,et al. Rapid assessment of bacterial viability by flow cytometry , 1992, Applied Microbiology and Biotechnology.
[97] H. Ridgway,et al. Use of a fluorescent redox probe for direct visualization of actively respiring bacteria , 1992, Applied and environmental microbiology.
[98] S. Borriello,et al. Detection of capsule in strains of Clostridium difficile of varying virulence and toxigenicity. , 1990, Microbial pathogenesis.
[99] L. K. Nakamura. Bacillus thiaminolyticus sp. nov., nom. rev. , 1990, International journal of systematic bacteriology.
[100] C. Hatheway,et al. Toxigenic clostridia , 1990, Clinical Microbiology Reviews.
[101] R. Swannell,et al. An investigation of staining methods to determine total cell numbers and the number of respiring micro-organisms in samples obtained from the field and the laboratory , 1988 .
[102] K. W. Thomas,et al. Natural establishment of thiaminase activity in the alimentary tract of newborn lambs and effects on thiamine status and growth rates. , 1987, Australian veterinary journal.
[103] L. Fenicia,et al. Two cases of type E infant botulism caused by neurotoxigenic Clostridium butyricum in Italy. , 1986, The Journal of infectious diseases.
[104] J Becker-Birck,et al. Simultaneous determination of the total number of aquatic bacteria and the number thereof involved in respiration , 1978, Applied and environmental microbiology.
[105] H. S. Levinson,et al. Sequence of Events During Bacillus megaterium Spore Germination , 1966, Journal of bacteriology.
[106] Larry R. Beuchat,et al. Food microbiology : fundamentals and frontiers , 2013 .
[107] E. Forsgren. European foulbrood in honey bees. , 2010, Journal of invertebrate pathology.
[108] A. Nocker,et al. Discrimination between live and dead cellsin bacterial communities from environmental water samples analyzed by 454 pyrosequencing. , 2010, International microbiology : the official journal of the Spanish Society for Microbiology.
[109] M. Nei,et al. Molecular Evolutionary Genetics Analysis , 2007 .
[110] A. Whitney,et al. Nucleic acid-based methods for the detection of bacterial pathogens: present and future considerations for the clinical laboratory. , 2006, Clinica chimica acta; international journal of clinical chemistry.
[111] Peter Setlow,et al. Spore germination. , 2003, Current opinion in microbiology.
[112] T. Horan,et al. Guideline for prevention of surgical site infection. , 2000, Bulletin of the American College of Surgeons.
[113] M R Barer,et al. Bacterial viability and culturability. , 1999, Advances in microbial physiology.
[114] D. Schlessinger,et al. Nucleolytic processing of ribonucleic acid transcripts in procaryotes. , 1986, Microbiological reviews.