Small Amine Molecules: Solvent Design Toward Facile Improvement of Protein Stability Against Aggregation and Inactivation.

Proteins are prone to inactivation in aqueous solutions because chemical modification and aggregation usually occur, particularly at high temperature. This review focuses on the recent advance in practical application with amine compounds that prevent the heat-induced inactivation and aggregation of proteins. Coexistence of amine solutes, typically diamines, polyamines, amino acid esters, and amidated amino acids decreases the heat-induced inactivation rate of proteins by one order of magnitude compared with that in the absence of additives under low concentrations of proteins at physiological pH. The amine compounds mainly suppress chemical modification, typically the β-elimination of disulfide bond and deamidation of asparagine side chain, thereby preventing heat-induced inactivation of proteins. Polyamines do not improve the refolding yield of proteins, owing to decrease in the solubility of unfolded proteins. In contrast, arginine is the most versatile additive for various situations, such as refolding of recombinant proteins, solubilized water-insoluble compounds, and prevention of nonspecific binding to solid surfaces; however, it is not always effective for preventing heat-induced aggregation. Amine compounds will be a key to prevent protein inactivation in solution additives.

[1]  E. Takai,et al.  Chemical modification of amino acids by atmospheric-pressure cold plasma in aqueous solution , 2014 .

[2]  Steven L. Cohen,et al.  Beta-elimination and peptide bond hydrolysis: two distinct mechanisms of human IgG1 hinge fragmentation upon storage. , 2007, Journal of the American Chemical Society.

[3]  R. Rudolph,et al.  Suppression of protein aggregation by L-arginine. , 2009, Current pharmaceutical biotechnology.

[4]  D. Ejima,et al.  Structure-based analysis reveals hydration changes induced by arginine hydrochloride. , 2008, Biophysical chemistry.

[5]  W. Lin,et al.  Renaturation of casein kinase II from recombinant subunits produced in Escherichia coli: purification and characterization of the reconstituted holoenzyme. , 1993, Protein expression and purification.

[6]  Takashi Kumasaka,et al.  High-resolution X-ray analysis reveals binding of arginine to aromatic residues of lysozyme surface: implication of suppression of protein aggregation by arginine. , 2011, Protein engineering, design & selection : PEDS.

[7]  C. Vieille,et al.  Hyperthermophilic Enzymes: Sources, Uses, and Molecular Mechanisms for Thermostability , 2001, Microbiology and Molecular Biology Reviews.

[8]  A. Klibanov,et al.  Analysis of processes causing thermal inactivation of enzymes. , 1988, Methods of biochemical analysis.

[9]  T. Arakawa,et al.  Preferential interactions of proteins with solvent components in aqueous amino acid solutions. , 1983, Archives of biochemistry and biophysics.

[10]  K. Shiraki,et al.  Ternary System of Solution Additives with Arginine and Salt for Refolding of Beta-Galactosidase , 2010, The protein journal.

[11]  K. Shiraki,et al.  L-argininamide improves the refolding more effectively than L-arginine. , 2007, Journal of biotechnology.

[12]  Oligoethylene glycols prevent thermal aggregation of α‐chymotrypsin in a temperature‐dependent manner: Implications for design guidelines , 2013, Biotechnology progress.

[13]  A. Woods The mighty arginine, the stable quaternary amines, the powerful aromatics, and the aggressive phosphate: their role in the noncovalent minuet. , 2004, Journal of proteome research.

[14]  S. Fujiwara,et al.  Biophysical effect of amino acids on the prevention of protein aggregation. , 2002, Journal of biochemistry.

[15]  A. Klibanov,et al.  Thermal destruction processes in proteins involving cystine residues. , 1987, The Journal of biological chemistry.

[16]  D. Ejima,et al.  Refolding single-chain antibody (scFv) using lauroyl-L-glutamate as a solubilization detergent and arginine as a refolding additive. , 2011, Protein expression and purification.

[17]  R. Rudolph,et al.  In vitro folding of inclusion body proteins , 1996, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[18]  P. Heinrich,et al.  Recombinant soluble human interleukin-6 receptor. Expression in Escherichia coli, renaturation and purification. , 1993, European journal of biochemistry.

[19]  E. Takai,et al.  Cysteine inhibits amyloid fibrillation of lysozyme and directs the formation of small worm‐like aggregates through non‐covalent interactions , 2014, Biotechnology progress.

[20]  K. Tsumoto,et al.  The effects of arginine on refolding of aggregated proteins: not facilitate refolding, but suppress aggregation. , 2003, Biochemical and biophysical research communications.

[21]  T. Oshima A new polyamine, thermospermine, 1,12-diamino-4,8-diazadodecane, from an extreme thermophile. , 1979, The Journal of biological chemistry.

[22]  T. Arakawa,et al.  Arginine increases the solubility of alkyl gallates through interaction with the aromatic ring. , 2011, Journal of biochemistry.

[23]  Satoshi Saitoh,et al.  Thermodynamic and Fluorescence Analyses to Determine Mechanisms of IgG1 Stabilization and Destabilization by Arginine , 2013, Pharmaceutical Research.

[24]  T. Arakawa,et al.  Solubility enhancement of gluten and organic compounds by arginine. , 2008, International journal of pharmaceutics.

[25]  Paul Haake,et al.  Equilibrium constants for association of guanidinium and ammonium ions with oxyanions: The effect of changing basicity of the oxyanion , 1977 .

[26]  M. Davies,et al.  The oxidative environment and protein damage. , 2005, Biochimica et biophysica acta.

[27]  Shunsuke Tomita,et al.  Why do solution additives suppress the heat‐induced inactivation of proteins? Inhibition of chemical modifications , 2011, Biotechnology progress.

[28]  Brian M. Murphy,et al.  Stability of Protein Pharmaceuticals: An Update , 2010, Pharmaceutical Research.

[29]  K. Shiraki,et al.  Differences in the Effects of Solution Additives on Heat‐ and Refolding‐Induced Aggregation , 2008, Biotechnology progress.

[30]  E. Takai,et al.  Arginine and lysine reduce the high viscosity of serum albumin solutions for pharmaceutical injection. , 2014, Journal of bioscience and bioengineering.

[31]  R. Rudolph,et al.  Renaturation, Purification and Characterization of Recombinant Fab-Fragments Produced in Escherichia coli , 1991, Bio/Technology.

[32]  K. Shiraki,et al.  Diamines prevent thermal aggregation and inactivation of lysozyme. , 2005, Journal of bioscience and bioengineering.

[33]  F. Madeo,et al.  Polyamines in aging and disease , 2011, Aging.

[34]  Bernhardt L Trout,et al.  Rational design of solution additives for the prevention of protein aggregation. , 2004, Biophysical journal.

[35]  K. Tsumoto,et al.  Antitumor activity of interleukin‐21 prepared by novel refolding procedure from inclusion bodies expressed in Escherichia coli , 2002, FEBS letters.

[36]  Ronald T. Borchardt,et al.  Chemical Pathways of Peptide Degradation. II. Kinetics of Deamidation of an Asparaginyl Residue in a Model Hexapeptide , 1990, Pharmaceutical Research.

[37]  S. Tsuji,et al.  Renaturation of recombinant human neurotrophin‐3 from inclusion bodies using a suppressor agent of aggregation , 1998, Biotechnology and applied biochemistry.

[38]  T. Arakawa,et al.  Multi-faceted arginine: mechanism of the effects of arginine on protein. , 2014, Current protein and peptide science.

[39]  D. Ejima,et al.  Solubilization of active green fluorescent protein from insoluble particles by guanidine and arginine. , 2003, Biochemical and biophysical research communications.

[40]  B. Trout,et al.  Interaction of arginine with proteins and the mechanism by which it inhibits aggregation. , 2010, The journal of physical chemistry. B.

[41]  T. Oshima Thermine: a new polyamine from an extreme thermophile. , 1975, Biochemical and biophysical research communications.

[42]  D. Urry,et al.  Nonenzymatic deamidation of asparaginyl and glutaminyl residues in proteins. , 1991, Critical reviews in biochemistry and molecular biology.

[43]  T. Rejtar,et al.  Desulfurization of cysteine-containing peptides resulting from sample preparation for protein characterization by mass spectrometry. , 2010, Rapid communications in mass spectrometry : RCM.

[44]  K. Shiraki,et al.  trans-Cyclohexanediamines Prevent Thermal Inactivation of Protein: Role of Hydrophobic and Electrostatic Interactions , 2008, The protein journal.

[45]  Y. Kai,et al.  Comparative analyses of the conformational stability of a hyperthermophilic protein and its mesophilic counterpart. , 2001, European journal of biochemistry.

[46]  J. Ahn,et al.  Investigation of refolding condition for Pseudomonas fluorescens lipase by response surface methodology. , 1997, Journal of biotechnology.

[47]  Xinxia Peng,et al.  Effects of arginine on heat‐induced aggregation of concentrated protein solutions , 2011, Biotechnology progress.

[48]  T. Arakawa,et al.  Molecular dynamics simulation of the arginine-assisted solubilization of caffeic acid: intervention in the interaction. , 2013, The journal of physical chemistry. B.

[49]  E Schwarz,et al.  Advances in refolding of proteins produced in E. coli. , 1998, Current opinion in biotechnology.

[50]  Douglas S Rehder,et al.  Identification and characterization of deamidation sites in the conserved regions of human immunoglobulin gamma antibodies. , 2005, Analytical chemistry.

[51]  K. Shiraki,et al.  Amino Acid Esters Prevent Thermal Inactivation and Aggregation of Lysozyme , 2008, Biotechnology progress.

[52]  A. Klibanov,et al.  Why does ribonuclease irreversibly inactivate at high temperatures? , 1986, Biochemistry.

[53]  M. Sawai,et al.  Studies on the mechanism of aspartic acid cleavage and glutamine deamidation in the acidic degradation of glucagon. , 2005, Journal of pharmaceutical sciences.

[54]  K. Schug,et al.  Noncovalent binding between guanidinium and anionic groups: focus on biological- and synthetic-based arginine/guanidinium interactions with phosph[on]ate and sulf[on]ate residues. , 2005, Chemical reviews.

[55]  Kouhei Tsumoto,et al.  How Additives Influence the Refolding of Immunoglobulin-folded Proteins in a Stepwise Dialysis System , 2003, The Journal of Biological Chemistry.

[56]  D. Volkin,et al.  Degradative covalent reactions important to protein stability , 1997, Molecular biotechnology.

[57]  S. Gellman,et al.  Artificial chaperone-assisted refolding of denatured-reduced lysozyme: modulation of the competition between renaturation and aggregation. , 1996, Biochemistry.

[58]  K. Tsumoto,et al.  Highly efficient recovery of functional single-chain Fv fragments from inclusion bodies overexpressed in Escherichia coli by controlled introduction of oxidizing reagent--application to a human single-chain Fv fragment. , 1998, Journal of immunological methods.

[59]  Wei Wang,et al.  Protein aggregation and its inhibition in biopharmaceutics. , 2005, International journal of pharmaceutics.

[60]  S. Fujiwara,et al.  Prevention of thermal inactivation and aggregation of lysozyme by polyamines. , 2003, European journal of biochemistry.

[61]  J. Sereikaitė,et al.  Different effects of (L)-arginine on the heat-induced unfolding and aggregation of proteins. , 2011, Biologicals : journal of the International Association of Biological Standardization.

[62]  Kouhei Tsumoto,et al.  Suppression of protein interactions by arginine: a proposed mechanism of the arginine effects. , 2007, Biophysical chemistry.

[63]  S L Mowbray,et al.  Planar stacking interactions of arginine and aromatic side-chains in proteins. , 1994, Journal of molecular biology.

[64]  I. Pastan,et al.  A method for increasing the yield of properly folded recombinant fusion proteins: single-chain immunotoxins from renaturation of bacterial inclusion bodies. , 1992, Analytical biochemistry.

[65]  T. Florence Degradation of protein disulphide bonds in dilute alkali. , 1980, The Biochemical journal.

[66]  T. Arakawa,et al.  Arginine increases the solubility of coumarin: comparison with salting-in and salting-out additives. , 2008, Journal of biochemistry.

[67]  E. Takai,et al.  Synergistic solubilization of porcine myosin in physiological salt solution by arginine. , 2013, International journal of biological macromolecules.

[68]  Adel Golovin,et al.  Cation–π interactions in protein–protein interfaces , 2005 .

[69]  K. Shiraki,et al.  Indispensable structure of solution additives to prevent inactivation of lysozyme for heating and refolding , 2009, Biotechnology progress.

[70]  C. Motono,et al.  Urea-induced unfolding and conformational stability of 3-isopropylmalate dehydrogenase from the Thermophile thermus thermophilus and its mesophilic counterpart from Escherichia coli. , 1999, Biochemistry.

[71]  D. Ejima,et al.  Is arginine a protein-denaturant? , 2005, Protein expression and purification.

[72]  T. Arakawa,et al.  Effect of additives on protein aggregation. , 2009, Current pharmaceutical biotechnology.

[73]  T. Arakawa,et al.  Preferential interactions of proteins with salts in concentrated solutions. , 1982, Biochemistry.

[74]  K. Shiraki,et al.  Amidated amino acids are prominent additives for preventing heat-induced aggregation of lysozyme. , 2007, Journal of bioscience and bioengineering.

[75]  Mohamed A. Marahiel,et al.  Conservation of rapid two-state folding in mesophilic, thermophilic and hyperthermophilic cold shock proteins , 1998, Nature Structural Biology.

[76]  A. Pegg,et al.  Polyamine catabolism and disease. , 2009, The Biochemical journal.

[77]  Clark,et al.  Refolding of recombinant proteins , 1998, Current opinion in biotechnology.

[78]  X.-X. Zhou,et al.  Differences in amino acids composition and coupling patterns between mesophilic and thermophilic proteins , 2007, Amino Acids.

[79]  T. Arakawa,et al.  Stabilizing and destabilizing effects of arginine on deoxyribonucleic acid. , 2010, International journal of biological macromolecules.

[80]  Bernhardt L Trout,et al.  Protein-associated cation clusters in aqueous arginine solutions and their effects on protein stability and size. , 2013, ACS chemical biology.

[81]  K. Shiraki,et al.  Correlation Between Thermal Aggregation and Stability of Lysozyme with Salts Described by Molar Surface Tension Increment: An Exceptional Propensity of Ammonium Salts as Aggregation Suppressor , 2007, The protein journal.

[82]  C. Guda,et al.  L-arginine mediated renaturation enhances yield of human, α6 Type IV collagen non-collagenous domain from bacterial inclusion bodies. , 2012, Protein and peptide letters.

[83]  W. Ens,et al.  Deamidation of -Asn-Gly- sequences during sample preparation for proteomics: Consequences for MALDI and HPLC-MALDI analysis. , 2006, Analytical chemistry.

[84]  T. Oshima Unique polyamines produced by an extreme thermophile, Thermus thermophilus , 2007, Amino Acids.

[85]  T. Arakawa,et al.  The solubility of nucleobases in aqueous arginine solutions. , 2010, Archives of biochemistry and biophysics.

[86]  Dhawal Shah,et al.  Arginine–aromatic interactions and their effects on arginine‐induced solubilization of aromatic solutes and suppression of protein aggregation , 2012, Biotechnology progress.

[87]  M. Gilson,et al.  Strength of Solvent-Exposed Salt-Bridges† , 1999 .

[88]  E D Clark,et al.  Protein refolding for industrial processes. , 2001, Current opinion in biotechnology.

[89]  T. Kameda,et al.  Effects of multivalency and hydrophobicity of polyamines on enzyme hyperactivation of α-chymotrypsin , 2015 .

[90]  R. Rudolph,et al.  Biochemical properties of the kringle 2 and protease domains are maintained in the refolded t-PA deletion variant BM 06.022. , 1992, Protein engineering.

[91]  T. Ueda,et al.  Effective renaturation of reduced lysozyme by gentle removal of urea. , 1995, Protein engineering.

[92]  J. Jänne,et al.  Physiology of the natural polyamines putrescine, spermidine and spermine. , 1975, Medical biology.

[93]  M. E. Clark,et al.  Living with water stress: evolution of osmolyte systems. , 1982, Science.

[94]  T. Arakawa,et al.  Mechanism of protein salting in and salting out by divalent cation salts: balance between hydration and salt binding. , 1984, Biochemistry.

[95]  Bernhardt L Trout,et al.  Role of arginine in the stabilization of proteins against aggregation. , 2005, Biochemistry.

[96]  T. Imanaka,et al.  Arginine ethylester prevents thermal inactivation and aggregation of lysozyme. , 2004, European journal of biochemistry.

[97]  R. Nussinov,et al.  Factors enhancing protein thermostability. , 2000, Protein engineering.

[98]  T. Arakawa,et al.  Arginine-assisted solubilization system for drug substances: solubility experiment and simulation. , 2010, The journal of physical chemistry. B.

[99]  J. Thornton,et al.  Amino/aromatic interactions in proteins: is the evidence stacked against hydrogen bonding? , 1994, Journal of molecular biology.

[100]  A. Klibanov,et al.  The mechanisms of irreversible enzyme inactivation at 100C. , 1985, Science.

[101]  E. Takai,et al.  Specific decrease in solution viscosity of antibodies by arginine for therapeutic formulations. , 2014, Molecular pharmaceutics.

[102]  Sean Wang,et al.  Arginine as an eluent for automated on-line Protein A/size exclusion chromatographic analysis of monoclonal antibody aggregates in cell culture. , 2014, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

[103]  K. Shiraki,et al.  Extraction and purification of human interleukin-10 from transgenic rice seeds. , 2010, Protein expression and purification.

[104]  R Tyler-Cross,et al.  Effects of amino acid sequence, buffers, and ionic strength on the rate and mechanism of deamidation of asparagine residues in small peptides. , 1991, The Journal of biological chemistry.