Specific Applications of Vibrational Spectroscopy in Biomedical Engineering

Sylwia Olsztynska-Janus1, Marlena Gąsior-Glogowska1,4, Katarzyna Szymborska-Malek2, Boguslawa Czarnik-Matusewicz3 and Malgorzata Komorowska1,4 1Institute of Biomedical Engineering and Instrumentation, Wroclaw University of Technology, 2Institute of Physical and Theoretical Chemistry, Wroclaw University of Technology, 3Faculty of Chemistry, University of Wroclaw, 4Regional Specialist Hospital in Wroclaw, Research and Development Centre, Wroclaw, Poland

[1]  A. Synytsya,et al.  Raman spectroscopic study of calf thymus DNA: an effect of proton‐ and γ‐irradiation , 2007 .

[2]  S. Lindsay,et al.  Structure of DNA hydration shells studied by Raman spectroscopy , 1989, Biopolymers.

[3]  J. Scherer,et al.  Raman spectra and water absorption of bovine serum albumin , 1989 .

[4]  J. Grdadolnik,et al.  Bovine serum albumin observed by infrared spectrometry. II. Hydration mechanisms and interaction configurations of embedded H2O molecules , 2001 .

[5]  J. Duguid,et al.  Raman spectroscopy of DNA-metal complexes. I. Interactions and conformational effects of the divalent cations: Mg, Ca, Sr, Ba, Mn, Co, Ni, Cu, Pd, and Cd. , 1993, Biophysical journal.

[6]  Abdelilah Beljebbar,et al.  Discriminating healthy from tumor and necrosis tissue in rat brain tissue samples by Raman spectral imaging. , 2007, Biochimica et biophysica acta.

[7]  K. A. Hartman,et al.  Hydration of Deoxyribonucleic Acid. II. An Infrared Study , 1963 .

[8]  A. Barth Infrared spectroscopy of proteins. , 2007, Biochimica et biophysica acta.

[9]  E. Taillandier,et al.  Infrared spectroscopy of DNA. , 1992, Methods in enzymology.

[10]  M. Komorowska,et al.  Structural alteration of collagen fibres--spectroscopic and mechanical studies. , 2010, Acta of bioengineering and biomechanics.

[11]  Fen-Ni Fu,et al.  Secondary Structure Estimation of Proteins Using the Amide III Region of Fourier Transform Infrared Spectroscopy: Application to Analyze Calcium-Binding-Induced Structural Changes in Calsequestrin , 1994 .

[12]  P. Polavarapu,et al.  Structures of intact glycoproteins from vibrational circular dichroism , 2006, Proteins.

[13]  R. Savoie,et al.  Raman spectroscopic study of the effects of Ca2+, Mg2+, Zn2+, and Cd2+ ions on calf thymus DNA: Binding sites and conformational changes , 1990, Biopolymers.

[14]  Max Diem,et al.  IR spectroscopic studies of major cellular components. III. Hydration of protein, nucleic acid, and phospholipid films. , 2003, Biopolymers.

[15]  R. Wartell,et al.  Changes in Raman vibrational bands of calf thymus DNA during the B‐to‐A transition , 1982, Biopolymers.

[16]  D. O'shea,et al.  Conformational features of distamycin-DNA and netropsin-DNA complexes by Raman spectroscopy. , 1978, Proceedings of the National Academy of Sciences of the United States of America.

[17]  Shenggang Liu,et al.  Temperature-dependent Raman spectra of collagen and DNA. , 2004, Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy.

[18]  S. Kornilova,et al.  DNA structural transitions induced by divalent metal ions in aqueous solutions. , 2005, International journal of biological macromolecules.

[19]  H. Medien Spectrophotometric method for determination and kinetics of amino acids through their reaction with syringaldehyde , 1998 .

[20]  S S Gambhir,et al.  Molecular imaging: current status and emerging strategies. , 2010, Clinical radiology.

[21]  Pablo G. Debenedetti,et al.  A calorimetric and spectroscopic study of DNA at low hydration , 2004 .

[22]  Kenneth A. Arndt,et al.  Low‐Level Laser Therapy for Wound Healing: Mechanism and Efficacy , 2005, Dermatologic surgery : official publication for American Society for Dermatologic Surgery [et al.].

[23]  W. Hennink,et al.  Fourier transform infrared spectrometric analysis of protein conformation: effect of sampling method and stress factors. , 2001, Analytical biochemistry.

[24]  G. Thomas,et al.  Characterization of DNA structures by laser Raman spectroscopy , 1984, Biopolymers.

[25]  M. Komorowska,et al.  Water Evaporation Analysis of L-Phenylalanine from Initial Aqueous Solutions to Powder State by Vibrational Spectroscopy , 2006, Applied spectroscopy.

[26]  N. Boens,et al.  ATR-IR spectroscopic study of the structural changes in the hydrophobic region of ICPAN/DPPC bilayers , 2008 .

[27]  Y. Ozaki,et al.  Two-Dimensional/Attenuated Total Reflection Infrared Correlation Spectroscopy Studies on Secondary Structural Changes in Human Serum Albumin in Aqueous Solutions: pH-Dependent Structural Changes in the Secondary Structures and in the Hydrogen Bondings of Side Chains , 2001 .

[28]  Jun Zhang,et al.  Probing conformational changes of proteins by quantitative second-derivative infrared spectroscopy. , 2005, Analytical biochemistry.

[29]  P. B. Keller,et al.  Structural forms, stabilities and transitions in double-helical poly(dG-dC) as a function of hydration and NaCl content. An infrared spectroscopic study. , 1986, Nucleic acids research.

[30]  N. Harrick,et al.  Internal reflection spectroscopy , 1968 .

[31]  Y. Ozaki,et al.  Two-Dimensional Near-Infrared Spectroscopy Study of Human Serum Albumin in Aqueous Solutions: Using Overtones and Combination Modes to Monitor Temperature-Dependent Changes in the Secondary Structure , 2000 .

[32]  W. Peticolas,et al.  Melting and premelting phenomenon in DNA by laser Raman scattering , 1975, Biopolymers.

[33]  H. Heise,et al.  Bio-analytical applications of mid-infrared spectroscopy using silver halide fiber-optic probes , 2002 .

[34]  M. Komorowska,et al.  Conformational changes of l-phenylalanine – Near infrared-induced mechanism of dimerization: B3LYP studies , 2009 .

[35]  K. Cieślik-Boczula,et al.  Interactions in two-component liposomes studied by 2D correlation spectroscopy , 2010 .

[36]  J. Brahms,et al.  Investigation of DNA structural changes by infrared spectroscopy , 1973 .

[37]  R. Soloway,et al.  Rapid, intraoperative detection of malignancy using attenuated total reflectance (ATR) and mobile fourier transform infrared (FT-IR) spectroscopy* , 2003 .

[38]  M. Komorowska,et al.  Usefulness of spectroscopy for biomedical engineering. , 2008, Acta of bioengineering and biomechanics.

[39]  W. Petrich MID-INFRARED AND RAMAN SPECTROSCOPY FOR MEDICAL DIAGNOSTICS , 2001 .

[40]  T. Zuyi,et al.  Effects of pH and metal ions on the conformation of bovine serum albumin in aqueous solution An attenuated total reflection (ATR) FTIR spectroscopic study , 1996 .

[41]  Yukihiro Ozaki,et al.  Two-Dimensional Infrared, Two-Dimensional Raman, and Two-Dimensional Infrared and Raman Heterospectral Correlation Studies of Secondary Structure of β-Lactoglobulin in Buffer Solutions , 2000 .

[42]  H. Mantsch,et al.  The use and misuse of FTIR spectroscopy in the determination of protein structure. , 1995, Critical reviews in biochemistry and molecular biology.

[43]  Y. Maréchal Observing the water molecule in macromolecules and aqueous media using infrared spectrometry , 2003 .

[44]  W. Caughey,et al.  Protein secondary structures in water from second-derivative amide I infrared spectra. , 1990, Biochemistry.

[45]  Agata Jaszczyszyn,et al.  Moving-window 2D correlation spectroscopy in studies of fluphenazine–DPPC dehydrated film as a function of temperature , 2010 .

[46]  Thompson Mp,et al.  Effect of metal ion binding on the secondary structure of bovine alpha-lactalbumin as examined by infrared spectroscopy. , 1991 .

[47]  M. Tabak,et al.  Interaction of bovine (BSA) and human (HSA) serum albumins with ionic surfactants: spectroscopy and modelling. , 2002, Biochimica et biophysica acta.

[48]  Michele Henry,et al.  Mitochondrial signal transduction in accelerated wound and retinal healing by near-infrared light therapy. , 2004, Mitochondrion.

[49]  Jonathan Hadgraft,et al.  Simultaneous monitoring of drug and solvent diffusion across a model membrane using ATR-FTIR spectroscopy. , 2009, European journal of pharmaceutical sciences : official journal of the European Federation for Pharmaceutical Sciences.

[50]  Yi-Zhuang Xu,et al.  Diagnosis of gastric inflammation and malignancy in endoscopic biopsies based on Fourier transform infrared spectroscopy. , 2005, Clinical chemistry.

[51]  P. Haris,et al.  Fourier transform infrared spectroscopic studies of lipids, polypeptides and proteins , 1989 .

[52]  Isao Noda,et al.  Two-dimensional correlation spectroscopy — Biannual survey 2007–2009 , 2010 .

[53]  G. Fischer,et al.  New infrared spectra and the tautomeric studies of purine and αl-alanine with an innovative sampling technique , 1999 .

[54]  B. Wood,et al.  Fourier Transform Infrared Spectroscopy as a Method for Monitoring the Molecular Dynamics of Lymphocyte Activation , 2000 .

[55]  H. M. Heise,et al.  Multivariate determination of glucose in whole blood by attenuated total reflection infrared spectroscopy , 1989 .

[56]  J. Max,et al.  Infrared Titration of Aqueous Glycine , 1998 .

[57]  D. Burr,et al.  In situ examination of the time-course for secondary mineralization of Haversian bone using synchrotron Fourier transform infrared microspectroscopy. , 2008, Matrix biology : journal of the International Society for Matrix Biology.

[58]  P. Colomban,et al.  Nanomechanics of single silkworm and spider fibres: a Raman and micro-mechanical in situ study of the conformation change with stress , 2008 .

[59]  B. Singh,et al.  A distinct utility of the amide III infrared band for secondary structure estimation of aqueous protein solutions using partial least squares methods. , 2004, Biochemistry.

[60]  M. Komorowska,et al.  Influence of Near-Infrared Radiation on the pKa Values of L-Phenylalanine , 2006, Applied spectroscopy.

[61]  Ioan Notingher,et al.  Progress in Raman spectroscopy in the fields of tissue engineering, diagnostics and toxicological testing , 2006, Journal of materials science. Materials in medicine.

[62]  Michel Manfait,et al.  Combination of FTIR spectral imaging and chemometrics for tumour detection from paraffin-embedded biopsies. , 2008, The Analyst.

[63]  Frank S. Parker,et al.  Applications of Infrared Spectroscopy in Biochemistry, Biology, and Medicine , 1971 .

[64]  E. Taillandier,et al.  Right- and left-handed helixes of poly[d(A-T)].poly[d(A-T)] investigated by infrared spectroscopy. , 1986, Biochemistry.

[65]  B. Czarnik-Matusewicz,et al.  FTIR-ATR investigations of an α-helix to β-sheet conformational transition in poly(l-lysine) , 2008 .

[66]  K. Liedl,et al.  Z-DNA's Conformer Substates Revealed by FT-IR Difference Spectroscopy of Nonoriented Left-Handed Double Helical Poly(dG-dC) , 2005, Journal of biomolecular structure & dynamics.

[67]  L. W. Winchester,et al.  Application of Raman scattering to the measurement of ligament tension , 2008, 2008 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

[68]  M. Komorowska,et al.  Near-infrared radiation protects the red cell membrane against oxidation. , 2005, Blood cells, molecules & diseases.

[69]  H. Tajmir-Riahi,et al.  Interaction of toxic metal ions Cd2+, Hg2+, and Pb2+ with light-harvesting proteins of chloroplast thylakoid membranes. An FTIR spectroscopic study , 1993 .

[70]  Y. Ozaki,et al.  Two-Dimensional Attenuated Total Reflection/Infrared Correlation Spectroscopy Studies on Concentration and Heat-Induced Structural Changes of Human Serum Albumin in Aqueous Solutions , 2002 .

[71]  Y. L. Jeyachandran,et al.  Quantitative and qualitative evaluation of adsorption/desorption of bovine serum albumin on hydrophilic and hydrophobic surfaces. , 2009, Langmuir : the ACS journal of surfaces and colloids.

[72]  M. Komorowska,et al.  Vibrational Spectroscopic Study of l-Phenylalanine: Effect of pH , 2001 .

[73]  S. Licoccia,et al.  ATR–FTIR and NMR spectroscopic studies on the structure of polymeric gel electrolytes for biomedical applications , 2005 .

[74]  W. Pohle,et al.  A new conformation-specific infrared band of A-DNA in films. , 1980, Nucleic acids research.

[75]  Joseph W Freeman,et al.  Collagen self-assembly and the development of tendon mechanical properties. , 2003, Journal of biomechanics.

[76]  Yukihiro Ozaki,et al.  Two-Dimensional Correlation Spectroscopy: Applications in Vibrational and Optical Spectroscopy , 2002 .

[77]  Bogusława Czarnik-Matusewicz,et al.  Two-dimensional correlation analysis of Raman optical activity data on the α-helix-to-β-sheet transition in poly(L-lysine) , 2006 .

[78]  H. Matsui,et al.  Infrared spectroscopic studies on incorporating the effect of metallic ions into a M -DNA double helix , 2009 .

[79]  Bogusława Czarnik-Matusewicz,et al.  A study of urea-dependent denaturation of beta-lactoglobulin by principal component analysis and two-dimensional correlation spectroscopy. , 2009, The journal of physical chemistry. B.

[80]  H. Susi,et al.  Examination of the secondary structure of proteins by deconvolved FTIR spectra , 1986, Biopolymers.

[81]  V. R. Kondepati,et al.  Continuous reagent-free bed-side monitoring of glucose in biofluids using infrared spectrometry and micro-dialysis , 2007 .

[82]  Fritz Vollrath,et al.  Molecular deformation in spider dragline silk subjected to stress , 2000 .

[83]  Bubbles in DNA melting. , 2009, Journal of physics. Condensed matter : an Institute of Physics journal.

[84]  R. Meier Vibrational spectroscopy: a 'vanishing' discipline? , 2005, Chemical Society reviews.

[85]  M. Wolpert,et al.  Infrared spectra and molar absorption coefficients of the 20 alpha amino acids in aqueous solutions in the spectral range from 1800 to 500 cm(-1). , 2006, Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy.

[86]  A. Gräslund,et al.  A library of IR bands of nucleic acids in solution. , 2003, Biophysical chemistry.

[87]  M. Bina,et al.  The pH-dependent structure of calf thymus DNA studied by Raman spectroscopy. , 1982, Biophysical chemistry.

[88]  M. Komorowska,et al.  FT‐Raman spectroscopic study of thoracic aortic wall subjected to uniaxial stress , 2010 .

[89]  D. Williams,et al.  Fourier Transform Infrared Imaging of Human Hair with a High Spatial Resolution without the Use of a Synchrotron , 2005, Applied spectroscopy.

[90]  Siegfried Wartewig,et al.  Pharmaceutical applications of Mid-IR and Raman spectroscopy. , 2005, Advanced drug delivery reviews.

[91]  Werner Mäntele,et al.  Infrared Spectroscopy of Proteins , 2006 .

[92]  Robert J. Meier Vibrational Spectroscopy: A “Vanishing” Discipline? , 2005 .

[93]  J. Grdadolnik,et al.  Bovine serum albumin observed by infrared spectrometry. I. Methodology, structural investigation, and water uptake. , 2001, Biopolymers.

[94]  F. Parker Nucleic Acids and Related Compounds , 1971 .

[95]  Hydration effects under near-infrared radiation , 2002 .

[96]  Michael Neumaier,et al.  Infrared spectroscopy: A new diagnostic tool in Alzheimer disease , 2007, Neuroscience Letters.

[97]  M. Amer Raman Spectroscopy for Soft Matter Applications , 2009 .

[98]  A. Pevsner,et al.  Infrared Spectroscopic Studies of Major Cellular Components. Part I: The Effect of Hydration on the Spectra of Proteins , 2001 .

[99]  E Goormaghtigh,et al.  Secondary structure and dosage of soluble and membrane proteins by attenuated total reflection Fourier-transform infrared spectroscopy on hydrated films. , 1990, European journal of biochemistry.

[100]  David E. Booth,et al.  Chemometrics: Data Analysis for the Laboratory and Chemical Plant , 2004, Technometrics.

[101]  Shan‐Yang Lin,et al.  Subtractive similarity method used to study the infrared spectra of proteins in aqueous solution , 2003 .

[102]  E. Taillandier,et al.  Characterization of DNA structures by infrared spectroscopy: double helical forms of poly(dG-dC)•poly(dG-dC), poly(dD8G-dC)•poly(dD8G-dC), and poly(dG-dm5C)•poly(dG-dm5C) , 1985 .

[103]  J. Duguid,et al.  DNA melting investigated by differential scanning calorimetry and Raman spectroscopy. , 1996, Biophysical journal.

[104]  Fei Wang,et al.  Unfolding and refolding of bovine serum albumin induced by cetylpyridinium bromide. , 2005, Biophysical journal.

[105]  H. Tajmir-Riahi,et al.  The effect of HCl on the solution structure of calf thymus DNA: A comparative study of DNA denaturation by proton and metal cations using fourier transform IR difference spectroscopy , 1995, Biopolymers.

[106]  D L Bader,et al.  Determination of molecular changes in soft tissues under strain using laser Raman microscopy. , 2000, Journal of biomechanics.

[107]  M. Tabak,et al.  Small-angle X-ray scattering and electron paramagnetic resonance study of the interaction of bovine serum albumin with ionic surfactants. , 2004, Journal of colloid and interface science.

[108]  E. Taillandier,et al.  Conformational transitions of nucleic acids studied by IR and Raman spectroscopies , 1989 .

[109]  M. Pézolet,et al.  Determination of the secondary structure content of proteins in aqueous solutions from their amide I and amide II infrared bands. Comparison between classical and partial least-squares methods. , 1990, Biochemistry.

[110]  S. Cai,et al.  Identification of beta-turn and random coil amide III infrared bands for secondary structure estimation of proteins. , 1999, Biophysical chemistry.

[111]  P. Griffiths,et al.  Comparison of the Amide I/II Intensity Ratio of Solution and Solid-State Proteins Sampled by Transmission, Attenuated Total Reflectance, and Diffuse Reflectance Spectrometry , 1993 .

[112]  O. Hayaishi Does Fourier-transform infrared spectroscopy provide useful information on protein structures? , 1992 .