Syntenic organization of the mouse distal chromosome 7 imprinting cluster and the Beckwith-Wiedemann syndrome region in chromosome 11p15.5.

In human and mouse, most imprinted genes are arranged in chromosomal clusters. Their linked organization suggests co-ordinated mechanisms controlling imprinting and gene expression. The identification of local and regional elements responsible for the epigenetic control of imprinted gene expression will be important in understanding the molecular basis of diseases associated with imprinting such as Beckwith-Wiedemann syndrome. We have established a complete contig of clones along the murine imprinting cluster on distal chromosome 7 syntenic with the human imprinting region at 11p15.5 associated with Beckwith-Wiedemann syndrome. The cluster comprises approximately 1 Mb of DNA, contains at least eight imprinted genes and is demarcated by the two maternally expressed genes Tssc3 (Ipl) and H19 which are directly flanked by the non-imprinted genes Nap1l4 (Nap2) and Rpl23l (L23mrp), respectively. We also localized Kcnq1 (Kvlqt1) and Cd81 (Tapa-1) between Cdkn1c (p57(Kip2)) and Mash2. The mouse Kcnq1 gene is maternally expressed in most fetal but biallelically transcribed in most neonatal tissues, suggesting relaxation of imprinting during development. Our findings indicate conserved control mechanisms between mouse and human, but also reveal some structural and functional differences. Our study opens the way for a systematic analysis of the cluster by genetic manipulation in the mouse which will lead to animal models of Beckwith-Wiedemann syndrome and childhood tumours.

[1]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[2]  W. Reik,et al.  Imprinting mechanisms in mammals. , 1998, Current opinion in genetics & development.

[3]  K. Pfeifer,et al.  Imprinting of mouse Kvlqt1 is developmentally regulated. , 1998, Human molecular genetics.

[4]  D. Barlow Competition—a common motif for the imprinting mechanism? , 1997, The EMBO journal.

[5]  T. Ludwig,et al.  Mouse mutant embryos overexpressing IGF-II exhibit phenotypic features of the Beckwith-Wiedemann and Simpson-Golabi-Behmel syndromes. , 1997, Genes & development.

[6]  A. Feinberg,et al.  A 2.5-Mb transcript map of a tumor-suppressing subchromosomal transferable fragment from 11p15.5, and isolation and sequence analysis of three novel genes. , 1997, Genomics.

[7]  T. Moore,et al.  Multiple imprinted sense and antisense transcripts, differential methylation and tandem repeats in a putative imprinting control region upstream of mouse Igf2. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[8]  B. Tycko,et al.  The IPL gene on chromosome 11p15.5 is imprinted in humans and mice and is similar to TDAG51, implicated in Fas expression and apoptosis. , 1997, Human molecular genetics.

[9]  W. Reik,et al.  Transactivation of Igf2 in a mouse model of Beckwith–Wiedemann syndrome , 1997, Nature.

[10]  M. Surani,et al.  Structure and expression of the mouse L23mrp gene downstream of the imprinted H19 gene: biallelic expression and lack of interaction with the H19 enhancers. , 1997, Genomics.

[11]  R. Wevrick,et al.  The necdin gene is deleted in Prader-Willi syndrome and is imprinted in human and mouse. , 1997, Human molecular genetics.

[12]  B. Wollnik,et al.  Pathophysiological Mechanisms of Dominant and Recessive Kvlqt1 K + Channel Mutations Found in Inherited Cardiac Arrhythmias , 1997 .

[13]  M. Jiang,et al.  Suppression of Slow Delayed Rectifier Current by a Truncated Isoform of KvLQT1 Cloned from Normal Human Heart* , 1997, The Journal of Biological Chemistry.

[14]  N. Nowak,et al.  Functional characterization of human nucleosome assembly protein-2 (NAP1L4) suggests a role as a histone chaperone. , 1997, Genomics.

[15]  W. Reik,et al.  Imprinting of IGF2 and H19: lack of reciprocity in sporadic Beckwith-Wiedemann syndrome. , 1997, Human molecular genetics.

[16]  B. Tycko,et al.  Coding mutations in p57KIP2 are present in some cases of Beckwith-Wiedemann syndrome but are rare or absent in Wilms tumors. , 1997, American journal of human genetics.

[17]  N. Nowak,et al.  A 1-Mb physical map and PAC contig of the imprinted domain in 11p15.5 that contains TAPA1 and the BWSCR1/WT2 region. , 1997, Genomics.

[18]  W. Reik,et al.  Imprinting in clusters: lessons from Beckwith-Wiedemann syndrome. , 1997, Trends in genetics : TIG.

[19]  A. Feinberg,et al.  Low frequency of p57KIP2 mutation in Beckwith-Wiedemann syndrome. , 1997, American journal of human genetics.

[20]  F. Guillemot,et al.  The human Achaete-Scute homologue 2 (ASCL2,HASH2) maps to chromosome 11p15.5, close to IGF2 and is expressed in extravillus trophoblasts. , 1997, Human molecular genetics.

[21]  S. Elledge,et al.  Altered cell differentiation and proliferation in mice lacking p57KIP2 indicates a role in Beckwith–Wiedemann syndrome , 1997, Nature.

[22]  S. Levy,et al.  Normal Lymphocyte Development but Delayed Humoral Immune Response in CD81-null Mice , 1997, The Journal of experimental medicine.

[23]  M. Barbacid,et al.  Ablation of the CDK inhibitor p57Kip2 results in increased apoptosis and delayed differentiation during mouse development. , 1997, Genes & development.

[24]  D. J. Driscoll,et al.  Genomic imprinting: potential function and mechanisms revealed by the Prader-Willi and Angelman syndromes. , 1997, Molecular human reproduction.

[25]  B. Tycko DNA methylation in genomic imprinting. , 1997, Mutation research.

[26]  A. Feinberg,et al.  Human KVLQT1 gene shows tissue-specific imprinting and encompasses Beckwith-Wiedemann syndrome chromosomal rearrangements , 1997, Nature Genetics.

[27]  J. Clayton-Smith,et al.  Imprinting mutation in the Beckwith-Wiedemann syndrome leads to biallelic IGF2 expression through an H19-independent pathway. , 1996, Human molecular genetics.

[28]  Jacques Barhanin,et al.  KvLQT1 and IsK (minK) proteins associate to form the IKS cardiac potassium current , 1996, Nature.

[29]  A. Feinberg,et al.  A novel human homologue of yeast nucleosome assembly protein, 65 kb centromeric to the p57KIP2 gene, is biallelically expressed in fetal and adult tissues. , 1996, Human molecular genetics.

[30]  A. Poustka,et al.  Imprint switching on human chromosome 15 may involve alternative transcripts of the SNRPN gene , 1996, Nature Genetics.

[31]  Y. Fukushima,et al.  An imprinted gene p57KIP2 is mutated in Beckwith–Wiedemann syndrome , 1996, Nature Genetics.

[32]  M. Surani,et al.  Imprinted genes and regulation of gene expression by epigenetic inheritance. , 1996, Current opinion in cell biology.

[33]  R. Kobayashi,et al.  Drosophila NAP-1 is a core histone chaperone that functions in ATP-facilitated assembly of regularly spaced nucleosomal arrays , 1996, Molecular and cellular biology.

[34]  A. Ashworth,et al.  A member of the MAP kinase phosphatase gene family in mouse containing a complex trinucleotide repeat in the coding region. , 1996, Human molecular genetics.

[35]  A. Feinberg,et al.  Imprinting of the gene encoding a human cyclin-dependent kinase inhibitor, p57KIP2, on chromosome 11p15. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[36]  S. Tilghman,et al.  Genomic imprinting in mice: its function and mechanism. , 1996, Biology of reproduction.

[37]  A. Feinberg,et al.  Multiple genetic loci within 11p15 defined by Beckwith-Wiedemann syndrome rearrangement breakpoints and subchromosomal transferable fragments. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[38]  W. Reik,et al.  Imprinting mutations in the Beckwith-Wiedemann syndrome suggested by altered imprinting pattern in the IGF2-H19 domain. , 1995, Human molecular genetics.

[39]  M. Surani,et al.  Temporal and spatial regulation of H19 imprinting in normal and uniparental mouse embryos. , 1995, Development.

[40]  G. Gyapay,et al.  Imprinted chromosomal regions of the human genome display sex-specific meiotic recombination frequencies , 1995, Current Biology.

[41]  M. Pazin,et al.  An enhancer deletion affects both H19 and Igf2 expression. , 1995, Genes & development.

[42]  A. Zelenetz,et al.  A novel L23-related gene 40 kb downstream of the imprinted H19 gene is biallelically expressed in mid-fetal and adult human tissues , 1995 .

[43]  A. Murray,et al.  NAP1 acts with Clb1 to perform mitotic functions and to suppress polar bud growth in budding yeast , 1995, The Journal of cell biology.

[44]  A. Murray,et al.  Members of the NAP/SET family of proteins interact specifically with B- type cyclins , 1995, The Journal of cell biology.

[45]  W. Robinson,et al.  Sex-specific meiotic recombination in the Prader--Willi/Angelman syndrome imprinted region. , 1995, Human molecular genetics.

[46]  R. Palmiter,et al.  Targeted disruption of the tyrosine hydroxylase gene reveals that catecholamines are required for mouse fetal development , 1995, Nature.

[47]  J. Guénet,et al.  Tissue- and developmental stage-specific imprinting of the mouse proinsulin gene, Ins2. , 1995, Developmental biology.

[48]  W. Reik,et al.  Developmental control of allelic methylation in the imprinted mouse Igf2 and H19 genes. , 1994, Development.

[49]  R. Weksberg,et al.  Disruption of insulin–like growth factor 2 imprinting in Beckwith–Wiedemann syndrome , 1993, Nature genetics.

[50]  D. J. Driscoll,et al.  Allele-specific replication timing of imprinted gene regions , 1993, Nature.

[51]  T. Ekström,et al.  IGF2 is parentally imprinted during human embryogenesis and in the Beckwith–Wiedemann syndrome , 1993, Nature Genetics.

[52]  C. Polychronakos,et al.  Parental genomic imprinting of the human IGF2 gene , 1993, Nature Genetics.

[53]  R. Weksberg,et al.  Molecular characterization of cytogenetic alterations associated with the Beckwith-Wiedemann syndrome (BWS) phenotype refines the localization and suggests the gene for BWS is imprinted. , 1993, Human molecular genetics.

[54]  A. Feinberg,et al.  Relaxation of imprinted genes in human cancer , 1993, Nature.

[55]  M. Rudnicki,et al.  Simplified mammalian DNA isolation procedure. , 1991, Nucleic acids research.

[56]  U. Francke,et al.  Genomic organization and chromosomal localization of the TAPA-1 gene. , 1991, Journal of immunology.

[57]  A. Monaco,et al.  Yeast artificial chromosome libraries containing large inserts from mouse and human DNA. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[58]  Y. Ishimi,et al.  Identification and molecular cloning of yeast homolog of nucleosome assembly protein I which facilitates nucleosome assembly in vitro. , 1991, The Journal of biological chemistry.

[59]  P. Chomczyński,et al.  Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. , 1987, Analytical biochemistry.

[60]  A. Feinberg,et al.  A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. , 1983, Analytical biochemistry.

[61]  S. Hwang,et al.  The mouse H19 locus mediates a transition between imprinted and non-imprinted DNA replication patterns. , 1998, Human molecular genetics.

[62]  B. Horsthemke,et al.  Imprinting mutations on human chromosome 15 , 1997, Human mutation.

[63]  K. Mclaughlin,et al.  Mouse embryos with paternal duplication of an imprinted chromosome 7 region die at midgestation and lack placental spongiotrophoblast. , 1996, Development.

[64]  M. Lalande Parental imprinting and human disease. , 1996, Annual review of genetics.

[65]  A. Zelenetz,et al.  A novel L23-related gene 40 kb downstream of the imprinted H19 gene is biallelically expressed in mid-fetal and adult human tissues. , 1995, Human molecular genetics.

[66]  A. Joyner,et al.  Genomic imprinting of Mash2, a mouse gene required for trophoblast development , 1995, Nature Genetics.

[67]  D. Barlow,et al.  Characteristics of imprinted genes , 1995, Nature Genetics.

[68]  J. Knoll,et al.  Allele specificity of DNA replication timing in the Angelman/Prader–Willi syndrome imprinted chromosomal region , 1994, Nature Genetics.

[69]  A. Feinberg,et al.  Parental Imprinting of Human Chromosome Region 11p15.3-pter Involved in the Beckwith-Wiedemann Syndrome and Various Human Neoplasia , 1994, European journal of human genetics : EJHG.

[70]  J. Duffus,et al.  Yeast: a practical approach: I. Campbell and J. H. Duffus (eds). IRL Press Ltd Oxford and Washington 1988. xv + 289 pp. ISBN 0-947946-80-9 soft cover (or 0-947946-80-2 hard cover). Price £18.00, $36.00 or £27.00, $54.00 hard cover , 1988 .