Translation of CircRNAs
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N. Rajewsky | M. Landthaler | G. Dittmar | S. Kadener | E. Wyler | Reut Ashwal-Fluss | Marvin Jens | Nagarjuna Reddy Pamudurti | Osnat Bartok | M. Hanan | Daniel Perez-Hernandez | Christin Stottmeister | Larissa Ruhe | Evelyn Ramberger | Shlomo Shenzis | M. Samson | Marina Chekulaeva | N. Pamudurti
[1] Z. Yakhini,et al. Systematic discovery of cap-independent translation sequences in human and viral genomes , 2016, Science.
[2] Uwe Ohler,et al. Detecting actively translated open reading frames in ribosome profiling data , 2015, Nature Methods.
[3] Aviv Regev,et al. A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation. , 2015, Molecular cell.
[4] Minoru Yoshida,et al. Rolling Circle Translation of Circular RNA in Living Human Cells , 2015, Scientific Reports.
[5] A. Regev,et al. Many lncRNAs, 5’UTRs, and pseudogenes are translated and some are likely to express functional proteins , 2015, eLife.
[6] Peer Bork,et al. Integrated Transcriptome and Proteome Analyses Reveal Organ-Specific Proteome Deterioration in Old Rats , 2015, Cell systems.
[7] Petar Glažar,et al. Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed. , 2015, Molecular cell.
[8] N. Friedman,et al. Clk post-transcriptional control denoises circadian transcription both temporally and spatially , 2015, Nature Communications.
[9] J. Goeman,et al. Assessing the translational landscape of myogenic differentiation by ribosome profiling , 2015, Nucleic acids research.
[10] G. Dittmar,et al. Differential proteomic analysis of mouse macrophages exposed to adsorbate-loaded heavy fuel oil derived combustion particles using an automated sample-preparation workflow , 2015, Analytical and Bioanalytical Chemistry.
[11] G. Shan,et al. Exon-intron circular RNAs regulate transcription in the nucleus , 2015, Nature Structural &Molecular Biology.
[12] Yang Wang,et al. Efficient backsplicing produces translatable circular mRNAs , 2015, RNA.
[13] Tim Schneider,et al. Exon circularization requires canonical splice signals. , 2015, Cell reports.
[14] Teemu P. Miettinen,et al. Modified ribosome profiling reveals high abundance of ribosome protected mRNA fragments derived from 3′ untranslated regions , 2014, Nucleic acids research.
[15] Sol Shenker,et al. Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation. , 2014, Cell reports.
[16] S. Sigrist,et al. Differential centrifugation–based biochemical fractionation of the Drosophila adult CNS , 2014, Nature Protocols.
[17] Petar Glažar,et al. circBase: a database for circular RNAs , 2014, RNA.
[18] N. Rajewsky,et al. circRNA biogenesis competes with pre-mRNA splicing. , 2014, Molecular cell.
[19] Ying Chen Eyre-Walker,et al. Extensive translation of small Open Reading Frames revealed by Poly-Ribo-Seq , 2014, eLife.
[20] Paul Theodor Pyl,et al. HTSeq—a Python framework to work with high-throughput sequencing data , 2014, bioRxiv.
[21] D. Bartel,et al. Expanded identification and characterization of mammalian circular RNAs , 2014, Genome Biology.
[22] D. Sabatini,et al. Regulation of mTORC1 by amino acids. , 2014, Trends in cell biology.
[23] D. Bartel,et al. Widespread changes in the posttranscriptional landscape at the Drosophila oocyte-to-embryo transition. , 2014, Cell reports.
[24] N. Sharpless,et al. Detecting and characterizing circular RNAs , 2014, Nature Biotechnology.
[25] P. Brown,et al. Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments , 2014, eLife.
[26] Sebastian Kadener,et al. Synergistic Interactions between the Molecular and Neuronal Circadian Networks Drive Robust Behavioral Circadian Rhythms in Drosophila melanogaster , 2014, PLoS genetics.
[27] P. Brown,et al. Circular RNA Is Expressed across the Eukaryotic Tree of Life , 2014, PloS one.
[28] Joshua G. Dunn,et al. Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster , 2013, eLife.
[29] F. Jackson,et al. Translational Profiling of Clock Cells Reveals Circadianly Synchronized Protein Synthesis , 2013, PLoS biology.
[30] M. Marr,et al. The insulin receptor cellular IRES confers resistance to eIF4A inhibition , 2013, eLife.
[31] Cole Trapnell,et al. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions , 2013, Genome Biology.
[32] Sebastian D. Mackowiak,et al. Circular RNAs are a large class of animal RNAs with regulatory potency , 2013, Nature.
[33] J. Kjems,et al. Natural RNA circles function as efficient microRNA sponges , 2013, Nature.
[34] R. Jackson. The current status of vertebrate cellular mRNA IRESs. , 2013, Cold Spring Harbor perspectives in biology.
[35] Jon R Lorsch,et al. A mechanistic overview of translation initiation in eukaryotes , 2012, Nature Structural &Molecular Biology.
[36] M. Saitoe,et al. Mutations in the Drosophila insulin receptor substrate, CHICO, impair olfactory associative learning , 2012, Neuroscience Research.
[37] Steven L Salzberg,et al. Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.
[38] Nicholas T. Ingolia,et al. Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling , 2009, Science.
[39] A. Hinnebusch,et al. Regulation of Translation Initiation in Eukaryotes: Mechanisms and Biological Targets , 2009, Cell.
[40] Robert Tjian,et al. IRES-mediated functional coupling of transcription and translation amplifies insulin receptor feedback. , 2007, Genes & development.
[41] Michael Q. Zhang,et al. Characterization of RNase R-digested cellular RNA source that consists of lariat and circular RNAs from pre-mRNA splicing , 2006, Nucleic acids research.
[42] M. Hentze,et al. Bruno Acts as a Dual Repressor of oskar Translation, Promoting mRNA Oligomerization and Formation of Silencing Particles , 2006, Cell.
[43] D. Haussler,et al. Aligning multiple genomic sequences with the threaded blockset aligner. , 2004, Genome research.
[44] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[45] R. Tjian,et al. Control of cell number by Drosophila FOXO: downstream and feedback regulation of the insulin receptor pathway. , 2003, Genes & development.
[46] Tom H. Pringle,et al. The human genome browser at UCSC. , 2002, Genome research.
[47] M. Hentze,et al. Control of oskar mRNA translation by Bruno in a novel cell-free system from Drosophila ovaries. , 2000, Development.
[48] M. Hentze,et al. Translational control of dosage compensation in Drosophila by Sex‐lethal: cooperative silencing via the 5′ and 3′ UTRs of msl‐2 mRNA is independent of the poly(A) tail , 1999, The EMBO journal.
[49] J. Lytton,et al. A Circularized Sodium-Calcium Exchanger Exon 2 Transcript* , 1999, The Journal of Biological Chemistry.
[50] D. Yamamoto,et al. The Drosophila mushroom body is a quadruple structure of clonal units each of which contains a virtually identical set of neurones and glial cells. , 1997, Development.
[51] P. Sarnow,et al. Initiation of protein synthesis by the eukaryotic translational apparatus on circular RNAs. , 1995, Science.
[52] David Z. Chen,et al. METHOD Open Access , 2014 .
[53] Brad T. Sherman,et al. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources , 2008, Nature Protocols.
[54] M. Mann,et al. Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips , 2007, Nature Protocols.
[55] Terrence S. Furey,et al. The UCSC Table Browser data retrieval tool , 2004, Nucleic Acids Res..