Bilayer thickness and membrane protein function: an energetic perspective.

The lipid bilayer component of biological membranes is important for the distribution, organization, and function of bilayer-spanning proteins. This regulation is due to both specific lipid-protein interactions and general bilayer-protein interactions, which modulate the energetics and kinetics of protein conformational transitions, as well as the protein distribution between different membrane compartments. The bilayer regulation of membrane protein function arises from the hydrophobic coupling between the protein's hydrophobic domains and the bilayer hydrophobic core, which causes protein conformational changes that involve the protein/bilayer boundary to perturb the adjacent bilayer. Such bilayer perturbations, or deformations, incur an energetic cost, which for a given conformational change varies as a function of the bilayer material properties (bilayer thickness, intrinsic lipid curvature, and the elastic compression and bending moduli). Protein function therefore is regulated by changes in bilayer material properties, which determine the free-energy changes caused by the protein-induced bilayer deformation. The lipid bilayer thus becomes an allosteric regulator of membrane function.

[1]  J. East,et al.  Selectivity in lipid binding to the bacterial outer membrane protein OmpF. , 2000, Biophysical journal.

[2]  A. Lee,et al.  Lipids and their effects on membrane proteins: evidence against a role for fluidity. , 1991, Progress in lipid research.

[3]  V. Parsegian,et al.  Chapter 4 Hydration, Curvature, and Bending Elasticity of Phospholipid Monolayers , 1997 .

[4]  A. Johannsson,et al.  The effect of bilayer thickness on the activity of (Na+ + K+)-ATPase. , 1981, Biochimica et biophysica acta.

[5]  A. Hansen,et al.  Capsaicin Regulates Voltage-Dependent Sodium Channels by Altering Lipid Bilayer Elasticity , 2005, Molecular Pharmacology.

[6]  P. Yeagle Modulation of membrane function by cholesterol. , 1991, Biochimie.

[7]  Boris Martinac,et al.  Physical principles underlying the transduction of bilayer deformation forces during mechanosensitive channel gating , 2002, Nature Structural Biology.

[8]  R. Templer,et al.  Controlling the folding efficiency of an integral membrane protein. , 2004, Journal of molecular biology.

[9]  T. Werge,et al.  Cholesterol-induced protein sorting: an analysis of energetic feasibility. , 2003, Biophysical journal.

[10]  J. Killian Gramicidin and gramicidin-lipid interactions. , 1992, Biochimica et biophysica acta.

[11]  S. Orlowski,et al.  Effects of phospholipids on binding of calcium to (Ca2(+)-Mg2(+)-ATPase. , 1990, Biochemistry.

[12]  S H White,et al.  Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. III. Complete structure. , 1992, Biophysical journal.

[13]  A. Kuksis,et al.  Molecular species of glycerophospholipids and sphingomyelins of human erythrocytes: Improved method of analysis , 1989, Lipids.

[14]  J. Nagle,et al.  Structure of lipid bilayers. , 2000, Biochimica et biophysica acta.

[15]  J. A. Lundbæk Regulation of membrane protein function by lipid bilayer elasticity—a single molecule technology to measure the bilayer properties experienced by an embedded protein , 2006, Journal of physics. Condensed matter : an Institute of Physics journal.

[16]  R. McElhaney The influence of membrane lipid composition and physical properties of membrane structure and function in Acholeplasma laidlawii. , 1989, Critical reviews in microbiology.

[17]  P. Cullis,et al.  Lipid requirements for coupled cytochrome oxidase vesicles. , 1983, Biochemistry.

[18]  O. Andersen,et al.  Kinetics of gramicidin channel formation in lipid bilayers: transmembrane monomer association. , 1990, Science.

[19]  M. Straume,et al.  Modulation of metarhodopsin formation by cholesterol-induced ordering of bilayer lipids. , 1990, Biochemistry.

[20]  J. Schutzbach,et al.  Activation of dolichyl-phospho-mannose synthase by phospholipids. , 1985, European journal of biochemistry.

[21]  Boris Martinac,et al.  Open channel structure of MscL and the gating mechanism of mechanosensitive channels , 2002, Nature.

[22]  Erik Strandberg,et al.  Tilt angles of transmembrane model peptides in oriented and non-oriented lipid bilayers as determined by 2H solid-state NMR. , 2004, Biophysical journal.

[23]  R. Gruener,et al.  Lipid-ion channel interactions: Increasing phospholipid headgroup size but not ordering acyl chains alters reconstituted channel behavior , 1995, The Journal of Membrane Biology.

[24]  O. Andersen,et al.  Inclusion-induced bilayer deformations: effects of monolayer equilibrium curvature. , 2000, Biophysical journal.

[25]  J. Tocanne,et al.  Consequences of hydrophobic mismatch between lipids and melibiose permease on melibiose transport. , 2000, Biochemistry.

[26]  H. Sandermann Regulation of membrane enzymes by lipids. , 1978, Biochimica et biophysica acta.

[27]  Xianlin Han,et al.  Lipid rafts are enriched in arachidonic acid and plasmenylethanolamine and their composition is independent of caveolin-1 expression: a quantitative electrospray ionization/mass spectrometric analysis. , 2002, Biochemistry.

[28]  A. Finkelstein,et al.  Water and nonelectrolyte permeability of lipid bilayer membranes , 1976, The Journal of general physiology.

[29]  J. Killian,et al.  Sensitivity of single membrane-spanning alpha-helical peptides to hydrophobic mismatch with a lipid bilayer: effects on backbone structure, orientation, and extent of membrane incorporation. , 2001, Biochemistry.

[30]  S. Safran,et al.  Effect of lipid characteristics on the structure of transmembrane proteins. , 1998, Biophysical journal.

[31]  G. van Meer,et al.  Lipid microdomains, lipid translocation and the organization of intracellular membrane transport (Review) , 2003, Molecular membrane biology.

[32]  Randal R Ketchem,et al.  High-resolution polypeptide structure in a lamellar phase lipid environment from solid state NMR derived orientational constraints. , 1997, Structure.

[33]  W. Kauzmann Some factors in the interpretation of protein denaturation. , 1959, Advances in protein chemistry.

[34]  Erik Strandberg,et al.  Geometry and intrinsic tilt of a tryptophan-anchored transmembrane alpha-helix determined by (2)H NMR. , 2002, Biophysical journal.

[35]  J. A. Lundbæk,et al.  Spring constants for channel-induced lipid bilayer deformations. Estimates using gramicidin channels. , 1999, Biophysical journal.

[36]  A A Spector,et al.  Membrane lipid composition and cellular function. , 1985, Journal of lipid research.

[37]  B. de Kruijff,et al.  Lipid polymorphism and the functional roles of lipids in biological membranes. , 1979, Biochimica et biophysica acta.

[38]  J. F. Hinton,et al.  Structures of gramicidins A, B, and C incorporated into sodium dodecyl sulfate micelles. , 2001, Biochemistry.

[39]  J. F. Hinton,et al.  Gramicidin A/short-chain phospholipid dispersions: chain length dependence of gramicidin conformation and lipid organization. , 1994, Biochemistry.

[40]  L. Tamm,et al.  Elastic coupling of integral membrane protein stability to lipid bilayer forces , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[41]  S. Singer,et al.  The fluid mosaic model of the structure of cell membranes. , 1972, Science.

[42]  J. Seddon,et al.  Structure of the inverted hexagonal (HII) phase, and non-lamellar phase transitions of lipids. , 1990, Biochimica et biophysica acta.

[43]  J. Killian,et al.  Lipid dependence of membrane anchoring properties and snorkeling behavior of aromatic and charged residues in transmembrane peptides. , 2002, Biochemistry.

[44]  R. Cantor,et al.  The lateral pressure profile in membranes: a physical mechanism of general anesthesia. , 1997, Toxicology letters.

[45]  P. Blount,et al.  Assessment of potential stimuli for mechano-dependent gating of MscL: effects of pressure, tension, and lipid headgroups. , 2005, Biochemistry.

[46]  M. Caffrey,et al.  Fluorescence quenching in model membranes. 3. Relationship between calcium adenosinetriphosphatase enzyme activity and the affinity of the protein for phosphatidylcholines with different acyl chain characteristics. , 1981, Biochemistry.

[47]  E. Racker,et al.  Effect of lipid composition on the calcium/adenosine 5'-triphosphate coupling ratio of the Ca2+-ATPase of sarcoplasmic reticulum. , 1984, Biochemistry.

[48]  M. Brown,et al.  Modulation of Rhodopsin Function by Properties of the Membrane Bilayer , 2022 .

[49]  J. Killian,et al.  Hydrophobic mismatch between proteins and lipids in membranes. , 1998, Biochimica et biophysica acta.

[50]  E. Evans,et al.  Effect of chain length and unsaturation on elasticity of lipid bilayers. , 2000, Biophysical journal.

[51]  William Dowhan,et al.  Phosphatidylethanolamine and Monoglucosyldiacylglycerol Are Interchangeable in Supporting Topogenesis and Function of the Polytopic Membrane Protein Lactose Permease* , 2006, Journal of Biological Chemistry.

[52]  R. L. Kay,et al.  Redetermination of the pressure dependence of the lipid bilayer phase transition. , 1977, Biochemistry.

[53]  F. Yang,et al.  Effect of non-bilayer lipids on the activity of membrane enzymes , 1996 .

[54]  Shemille A. Collingwood,et al.  Single Molecule Methods for Monitoring Changes in Bilayer Elastic Properties , 2008, Journal of visualized experiments : JoVE.

[55]  S. Bezrukov Functional consequences of lipid packing stress , 2000 .

[56]  C. Montecucco,et al.  Bilayer thickness and enzymatic activity in the mitochondrial cytochrome c oxidase and ATPase complex , 1982, FEBS letters.

[57]  J. Killian,et al.  How proteins adapt to a membrane-water interface. , 2000, Trends in biochemical sciences.

[58]  R. Raphael,et al.  Effect of salicylate on the elasticity, bending stiffness, and strength of SOPC membranes. , 2005, Biophysical journal.

[59]  William Dowhan,et al.  Diversity and versatility of lipid-protein interactions revealed by molecular genetic approaches. , 2004, Biochimica et biophysica acta.

[60]  S. Treistman,et al.  Bilayer thickness modulates the conductance of the BK channel in model membranes. , 2004, Biophysical journal.

[61]  H. Huang,et al.  Deformation free energy of bilayer membrane and its effect on gramicidin channel lifetime. , 1986, Biophysical journal.

[62]  M. Wenk The emerging field of lipidomics , 2005, Nature Reviews Drug Discovery.

[63]  Erik Strandberg,et al.  Geometry and Intrinsic Tilt of a Tryptophan-Anchored Transmembrane α-Helix Determined by 2H NMR , 2002 .

[64]  F. Barrantes,et al.  Functional properties of the acetylcholine receptor incorporated in model lipid membranes. Differential effects of chain length and head group of phospholipids on receptor affinity states and receptor-mediated ion translocation. , 1984, The Journal of biological chemistry.

[65]  M. Bloom,et al.  Mattress model of lipid-protein interactions in membranes. , 1984, Biophysical journal.

[66]  J. Killian,et al.  Influence of lipid/peptide hydrophobic mismatch on the thickness of diacylphosphatidylcholine bilayers. A 2H NMR and ESR study using designed transmembrane alpha-helical peptides and gramicidin A. , 1998, Biochemistry.

[67]  J. East,et al.  Identification of the hydrophobic thickness of a membrane protein using fluorescence spectroscopy: studies with the mechanosensitive channel MscL. , 2005, Biochemistry.

[68]  J. Zimmerberg,et al.  Line tension and interaction energies of membrane rafts calculated from lipid splay and tilt. , 2005, Biophysical journal.

[69]  J. Killian,et al.  Different Membrane Anchoring Positions of Tryptophan and Lysine in Synthetic Transmembrane α-Helical Peptides* , 1999, The Journal of Biological Chemistry.

[70]  F W McLafferty,et al.  Quantitative analysis of phospholipids in functionally important membrane domains from RBL-2H3 mast cells using tandem high-resolution mass spectrometry. , 1999, Biochemistry.

[71]  W. Lehmann,et al.  Quantitative analysis of biological membrane lipids at the low picomole level by nano-electrospray ionization tandem mass spectrometry. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[72]  A. Hansen,et al.  Regulation of Sodium Channel Function by Bilayer Elasticity , 2004, The Journal of general physiology.

[73]  O. Andersen Kinetics of ion movement mediated by carriers and channels. , 1989, Methods in enzymology.

[74]  S. Gruner Intrinsic curvature hypothesis for biomembrane lipid composition: a role for nonbilayer lipids. , 1985, Proceedings of the National Academy of Sciences of the United States of America.

[75]  Eduardo Perozo,et al.  Structure of the KcsA channel intracellular gate in the open state , 2001, Nature Structural Biology.

[76]  K. Gekko,et al.  Compressibility of globular proteins in water at 25.degree.C , 1979 .

[77]  M. Weinrich,et al.  Voltage Gating of VDAC Is Regulated by Nonlamellar Lipids of Mitochondrial Membranes* , 2006, Journal of Biological Chemistry.

[78]  O. Andersen,et al.  Formation of non-beta 6.3-helical gramicidin channels between sequence-substituted gramicidin analogues. , 1992, Biophysical journal.

[79]  R. Hochmuth,et al.  Mechanochemical Properties of Membranes , 1978 .

[80]  J. Killian,et al.  Hydrophobic mismatch between helices and lipid bilayers. , 2003, Biophysical journal.

[81]  G. Feigenson Fluorescence quenching in model membranes. , 1982, Biophysical journal.

[82]  Effect of Phosphatidylserine on Unitary Conductance and Ba2+ Block of the BK Ca2+–activated K+ Channel , 2003, The Journal of general physiology.

[83]  A. Libchaber,et al.  Gramicidin channel kinetics under tension. , 1998, Biophysical journal.

[84]  M. Bloom,et al.  Combined influence of cholesterol and synthetic amphiphillic peptides upon bilayer thickness in model membranes. , 1992, Biophysical journal.

[85]  T. Wilson,et al.  The phospholipid requirement for activity of the lactose carrier of Escherichia coli. , 1984, The Journal of biological chemistry.

[86]  A. Lee,et al.  Effects of bilayer thickness on the activity of diacylglycerol kinase of Escherichia coli. , 2001, Biochemistry.

[87]  O. Andersen,et al.  The conformational preference of gramicidin channels is a function of lipid bilayer thickness 1 , 1997, FEBS letters.

[88]  Anthony G Lee,et al.  How lipids affect the activities of integral membrane proteins. , 2004, Biochimica et biophysica acta.

[89]  J. Killian,et al.  Peptides in lipid bilayers: the power of simple models. , 2006, Current opinion in structural biology.

[90]  M. Goulian,et al.  Energetics of inclusion-induced bilayer deformations. , 1998, Biophysical journal.

[91]  Hiromi Nomura,et al.  Structural changes in the calcium pump accompanying the dissociation of calcium , 2002, Nature.

[92]  Ole G Mouritsen,et al.  Lipids do influence protein function-the hydrophobic matching hypothesis revisited. , 2004, Biochimica et biophysica acta.

[93]  T. McIntosh,et al.  Roles of bilayer material properties in function and distribution of membrane proteins. , 2006, Annual review of biophysics and biomolecular structure.

[94]  B. Roux,et al.  Structure of gramicidin a in a lipid bilayer environment determined using molecular dynamics simulations and solid-state NMR data. , 2003, Journal of the American Chemical Society.

[95]  Y. Uratani,et al.  Effect of lipid acyl chain length on activity of sodium-dependent leucine transport system in Pseudomonas aeruginosa. , 1987, The Journal of biological chemistry.

[96]  O. Andersen,et al.  Gramicidin channels. , 2005, Annual review of physiology.

[97]  A. Driessen,et al.  Hydrophobic membrane thickness and lipid-protein interactions of the leucine transport system of Lactococcus lactis. , 1991, Biochimica et biophysica acta.

[98]  J. Israelachvili Refinement of the fluid-mosaic model of membrane structure. , 1977, Biochimica et biophysica acta.

[99]  E. Lindahl,et al.  Mesoscopic undulations and thickness fluctuations in lipid bilayers from molecular dynamics simulations. , 2000, Biophysical journal.

[100]  Peter C. Jordan,et al.  Membrane deformation and the elastic energy of insertion: Perturbation of membrane elastic constants due to peptide insertion , 2002 .

[101]  H. Ly,et al.  The influence of short-chain alcohols on interfacial tension, mechanical properties, area/molecule, and permeability of fluid lipid bilayers. , 2004, Biophysical journal.

[102]  G. Feigenson Phase boundaries and biological membranes. , 2007, Annual review of biophysics and biomolecular structure.

[103]  A. Carruthers,et al.  Human erythrocyte hexose transporter activity is governed by bilayer lipid composition in reconstituted vesicles. , 1984, Biochemistry.

[104]  O. Andersen,et al.  Lipid bilayer electrostatic energy, curvature stress, and assembly of gramicidin channels. , 1997, Biochemistry.

[105]  A. Driessen,et al.  Non-bilayer Lipids Stimulate the Activity of the Reconstituted Bacterial Protein Translocase* , 2000, The Journal of Biological Chemistry.

[106]  P. M. Sokolove,et al.  The reconstituted mitochondrial adenine nucleotide translocator: effects of lipid polymorphism. , 1994, Archives of biochemistry and biophysics.

[107]  W. Dowhan,et al.  Molecular basis for membrane phospholipid diversity: why are there so many lipids? , 1997, Annual review of biochemistry.

[108]  S. L. KellerA,et al.  A Probability of Alamethicin Conductance States Varies with Nonlamellar Tendency of Bilayer Phospholipids , 2022 .

[109]  V. Cherezov,et al.  Transmembrane peptides stabilize inverted cubic phases in a biphasic length-dependent manner: implications for protein-induced membrane fusion. , 2006, Biophysical journal.

[110]  A. Ben-Shaul,et al.  A molecular model for lipid-protein interaction in membranes: the role of hydrophobic mismatch. , 1993, Biophysical journal.

[111]  D. Needham,et al.  The effects of bilayer thickness and tension on gramicidin single-channel lifetime. , 1983, Biochimica et biophysica acta.

[112]  J. East,et al.  Interactions of phospholipids with the potassium channel KcsA. , 2002, Biophysical journal.

[113]  J. Killian,et al.  Induction of nonbilayer structures in diacylphosphatidylcholine model membranes by transmembrane alpha-helical peptides: importance of hydrophobic mismatch and proposed role of tryptophans. , 1996, Biochemistry.

[114]  A. Lee,et al.  Lipid-protein interactions in biological membranes: a structural perspective. , 2003, Biochimica et biophysica acta.

[115]  John Gutknecht,et al.  Permeability of small nonelectrolytes through lipid bilayer membranes , 2005, The Journal of Membrane Biology.

[116]  L. Yang,et al.  Experimental evidence for hydrophobic matching and membrane-mediated interactions in lipid bilayers containing gramicidin. , 1999, Biophysical journal.

[117]  M. Sheetz,et al.  Biological membranes as bilayer couples. A molecular mechanism of drug-erythrocyte interactions. , 1974, Proceedings of the National Academy of Sciences of the United States of America.

[118]  A. Bienvenüe,et al.  Chapter 12 - Modulation of Protein Function by Lipids , 1994 .

[119]  E. Jakobsson,et al.  Calculation of deformation energies and conformations in lipid membranes containing gramicidin channels. , 1990, Biophysical journal.