Bacterial seed endophyte shapes disease resistance in rice

[1]  Mengcen Wang,et al.  Overhauling the assessment of agrochemical-driven interferences with microbial communities for improved global ecosystem integrity , 2020, Environmental science and ecotechnology.

[2]  Trevor C. Charles,et al.  Microbiome definition re-visited: old concepts and new challenges , 2020, Microbiome.

[3]  B. Singh,et al.  Linking the Phyllosphere Microbiome to Plant Health. , 2020, Trends in plant science.

[4]  Yong-Hwan Lee,et al.  Domestication of Oryza species eco-evolutionarily shapes bacterial and fungal communities in rice seed , 2020, Microbiome.

[5]  S. Lau,et al.  Microenvironmental interplay predominated by beneficial Aspergillus abates fungal pathogen incidence in paddy environment. , 2019, Environmental science & technology.

[6]  F. Dini-Andreote,et al.  Ecology and Evolution of Plant Microbiomes. , 2019, Annual review of microbiology.

[7]  S. Sunagawa,et al.  Synthetic microbiota reveal priority effects and keystone strains in the Arabidopsis phyllosphere , 2019, Nature Ecology & Evolution.

[8]  K. Harms,et al.  Microbiome-driven identification of microbial indicators for postharvest diseases of sugar beets , 2019, Microbiome.

[9]  S. He,et al.  Plant-Microbe Interactions Facing Environmental Challenge. , 2019, Cell host & microbe.

[10]  H. Yoshida,et al.  A rice gene that confers broad-spectrum resistance to β-triketone herbicides , 2019, Science.

[11]  Francesco Asnicar,et al.  Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 , 2019, Nature Biotechnology.

[12]  G. Berg,et al.  Seeds of native alpine plants host unique microbial communities embedded in cross-kingdom networks , 2019, Microbiome.

[13]  Hui Li,et al.  Degradation of glyphosate and bioavailability of phosphorus derived from glyphosate in a soil-water system. , 2019, Water research.

[14]  Na Zhang,et al.  NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice , 2019, Nature Biotechnology.

[15]  A. Cébron,et al.  Stable isotope probing and metagenomics highlight the effect of plants on uncultured phenanthrene-degrading bacterial consortium in polluted soil , 2019, The ISME Journal.

[16]  M. Briand,et al.  Influence of Environment and Host Plant Genotype on the Structure and Diversity of the Brassica napus Seed Microbiota , 2019, Phytobiomes Journal.

[17]  E. Rubin,et al.  Rhizosphere microbiome structure alters to enable wilt resistance in tomato , 2018, Nature Biotechnology.

[18]  G. Berg,et al.  Tomato seeds preferably transmit plant beneficial endophytes , 2018 .

[19]  M. V. D. van der Heijden,et al.  Keystone taxa as drivers of microbiome structure and functioning , 2018, Nature Reviews Microbiology.

[20]  Yong Zhou,et al.  Dissipation Dynamic and Final Residues of Oxadiargyl in Paddy Fields Using High-Performance Liquid Chromatography-Tandem Mass Spectrometry Coupled with Modified QuEChERS Method , 2018, International journal of environmental research and public health.

[21]  R. Garrido-Oter,et al.  Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival , 2018, Cell.

[22]  P. Vitousek,et al.  Policy distortions, farm size, and the overuse of agricultural chemicals in China , 2018, Proceedings of the National Academy of Sciences.

[23]  Diannan Lu,et al.  Isolation and characterization of a quinclorac-degrading Actinobacteria Streptomyces sp. strain AH-B and its implication on microecology in contaminated soil. , 2018, Chemosphere.

[24]  Y. Onoda,et al.  Core microbiomes for sustainable agroecosystems , 2018, Nature Plants.

[25]  Guonian Zhu,et al.  Biotoxin Tropolone Contamination Associated with Nationwide Occurrence of Pathogen Burkholderia plantarii in Agricultural Environments in China. , 2018, Environmental science & technology.

[26]  C. Pieterse,et al.  The Soil-Borne Legacy , 2018, Cell.

[27]  G. Berg,et al.  Saving seed microbiomes , 2018, The ISME Journal.

[28]  J. Shon,et al.  Cooperative interactions between seed-borne bacterial and air-borne fungal pathogens on rice , 2018, Nature Communications.

[29]  G. Berg,et al.  The structure of the Brassica napus seed microbiome is cultivar-dependent and affects the interactions of symbionts and pathogens , 2017, Microbiome.

[30]  Vijaya Sai Ayyagari,et al.  Evaluation of haplotype diversity of Achatina fulica (Lissachatina) [Bowdich] from Indian sub-continent by means of 16S rDNA sequence and its phylogenetic relationships with other global populations , 2017, 3 Biotech.

[31]  A. Shade,et al.  Ecological patterns of seed microbiome diversity, transmission, and assembly. , 2017, Current opinion in microbiology.

[32]  J. Leach,et al.  Communication in the Phytobiome , 2017, Cell.

[33]  Xiao-Yang Zhi,et al.  Characterization of a Novel Nicotine Degradation Gene Cluster ndp in Sphingomonas melonis TY and Its Evolutionary Analysis , 2017, Front. Microbiol..

[34]  R. Kolter,et al.  Simplified and representative bacterial community of maize roots , 2017, Proceedings of the National Academy of Sciences.

[35]  E. Nelson The seed microbiome: Origins, interactions, and impacts , 2017, Plant and Soil.

[36]  Ben Nichols,et al.  Distributed under Creative Commons Cc-by 4.0 Vsearch: a Versatile Open Source Tool for Metagenomics , 2022 .

[37]  Paul J. McMurdie,et al.  DADA2: High resolution sample inference from Illumina amplicon data , 2016, Nature Methods.

[38]  M. Sekine,et al.  Identification of the Three Genes Involved in Controlling Production of a Phytotoxin Tropolone in Burkholderia plantarii , 2016, Journal of bacteriology.

[39]  S. Lau,et al.  Indole-3-Acetic Acid Produced by Burkholderia heleia Acts as a Phenylacetic Acid Antagonist to Disrupt Tropolone Biosynthesis in Burkholderia plantarii , 2016, Scientific Reports.

[40]  J. M. Dow,et al.  Functional and genomic insights into the pathogenesis of Burkholderia species to rice. , 2016, Environmental microbiology.

[41]  F. Ausubel,et al.  Associations with rhizosphere bacteria can confer an adaptive advantage to plants , 2015, Nature Plants.

[42]  E. Borer,et al.  Anthropogenic environmental changes affect ecosystem stability via biodiversity , 2015, Science.

[43]  N. Weyens,et al.  Bacterial seed endophytes: genera, vertical transmission and interaction with plants , 2015 .

[44]  J. Gershenzon,et al.  Induced Jasmonate Signaling Leads to Contrasting Effects on Root Damage and Herbivore Performance1 , 2015, Plant Physiology.

[45]  Cameron Johnson,et al.  Structure, variation, and assembly of the root-associated microbiomes of rice , 2015, Proceedings of the National Academy of Sciences.

[46]  W. Huber,et al.  Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.

[47]  Paul Theodor Pyl,et al.  HTSeq—a Python framework to work with high-throughput sequencing data , 2014, bioRxiv.

[48]  M. Schloter,et al.  Unraveling the plant microbiome: looking back and future perspectives , 2014, Front. Microbiol..

[49]  J. Vivanco,et al.  Rhizosphere microbiome assemblage is affected by plant development , 2013, The ISME Journal.

[50]  Mengcen Wang,et al.  Repression of Tropolone Production and Induction of a Burkholderia plantarii Pseudo-Biofilm by Carot-4-en-9,10-diol, a Cell-to-Cell Signaling Disrupter Produced by Trichoderma virens , 2013, PloS one.

[51]  D. Bebber,et al.  Crop pests and pathogens move polewards in a warming world , 2013 .

[52]  P. Mieczkowski,et al.  Practical innovations for high-throughput amplicon sequencing , 2013, Nature Methods.

[53]  P. Poole,et al.  The plant microbiome , 2013, Genome Biology.

[54]  F. Daayf,et al.  Signaling cross-talk in plant disease resistance. , 2013, Plant science : an international journal of experimental plant biology.

[55]  H. Leung,et al.  Plant-pathogen interactions: disease resistance in modern agriculture. , 2013, Trends in genetics : TIG.

[56]  Mengcen Wang,et al.  Carot-4-en-9,10-Diol, a Conidiation-Inducing Sesquiterpene Diol Produced by Trichoderma virens PS1-7 upon Exposure to Chemical Stress from Highly Active Iron Chelators , 2013, Applied and Environmental Microbiology.

[57]  N. Cochet,et al.  A standardized method for the sampling of rhizosphere and rhizoplan soil bacteria associated to a herbaceous root system , 2013, Annals of Microbiology.

[58]  Robert C. Edgar,et al.  Defining the core Arabidopsis thaliana root microbiome , 2012, Nature.

[59]  Steven L Salzberg,et al.  Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.

[60]  Marcel Martin Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .

[61]  J. Ham,et al.  Burkholderia glumae: next major pathogen of rice? , 2011, Molecular plant pathology.

[62]  Thilo Marauhn,et al.  Old Concepts and New Challenges , 2011 .

[63]  W. Huber,et al.  which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. MAnorm: a robust model for quantitative comparison of ChIP-Seq data sets , 2011 .

[64]  Rodrigo Lopez,et al.  Clustal W and Clustal X version 2.0 , 2007, Bioinform..

[65]  K. Scholthof The disease triangle: pathogens, the environment and society , 2007, Nature Reviews Microbiology.

[66]  V. Venturi,et al.  Involvement of quorum sensing and RpoS in rice seedling blight caused by Burkholderia plantarii. , 2006, FEMS microbiology letters.

[67]  P. Vandamme,et al.  Phylogenetic study and multiplex PCR-based detection of Burkholderia plantarii, Burkholderia glumae and Burkholderia gladioli using gyrB and rpoD sequences. , 2006, International journal of systematic and evolutionary microbiology.

[68]  P. Shannon,et al.  Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.

[69]  S. Sultan Phenotypic plasticity for plant development, function and life history. , 2000, Trends in plant science.

[70]  K. Senoo,et al.  High population of Sphingomonas species on plant surface , 1998 .

[71]  竹内 徹,et al.  Specific Detection of Burkholderia plantarii and B. glumae by PCR Using Primers Selected from the 16S-23S rDNA Spacer Regions. , 1997 .

[72]  H. Miyagawa,et al.  Pathogenicity of Pseudomonas glumae and P. plantarii to the ears and leaves of graminaceous plants. , 1988 .