Critical slowing down and attractive manifold: A mechanism for dynamic robustness in the yeast cell-cycle process.
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Zhiwen Zhang | Yao Zhao | Ying Lu | Chao Tang | Dedi Wang | Xiaojing Yang | Qi Ouyang | Fangting Li | Q. Ouyang | Chao Tang | Fangting Li | Ying Lu | Xiaojing Yang | Yao Zhao | Dedi Wang | Zhiwen Zhang
[1] Mike Tyers,et al. G1/S Transcription Factor Copy Number Is a Growth-Dependent Determinant of Cell Cycle Commitment in Yeast. , 2018, Cell systems.
[2] Albert Goldbeter,et al. A skeleton model for the network of cyclin-dependent kinases driving the mammalian cell cycle , 2011, Interface Focus.
[3] Michael Ruogu Zhang,et al. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. , 1998, Molecular biology of the cell.
[4] U. Alon,et al. Ordering Genes in a Flagella Pathway by Analysis of Expression Kinetics from Living Bacteria , 2001, Science.
[5] T. Weinert,et al. RAD53, DUN1 and PDS1 define two parallel G2/M checkpoint pathways in budding yeast , 1999, The EMBO journal.
[6] Katherine C. Chen,et al. Integrative analysis of cell cycle control in budding yeast. , 2004, Molecular biology of the cell.
[7] F. M. Yeong,et al. Exit from mitosis in budding yeast: biphasic inactivation of the Cdc28-Clb2 mitotic kinase and the role of Cdc20. , 2000, Molecular cell.
[8] W. Seufert,et al. Yeast Hct1 recognizes the mitotic cyclin Clb2 and other substrates of the ubiquitin ligase APC , 2001, The EMBO journal.
[9] M. Gerstein,et al. Complex transcriptional circuitry at the G1/S transition in Saccharomyces cerevisiae. , 2002, Genes & development.
[10] G Blomqvist,et al. Kinetic analysis. , 1991, Wiener klinische Wochenschrift.
[11] John J. Tyson,et al. Irreversible cell-cycle transitions are due to systems-level feedback , 2007, Nature Cell Biology.
[12] K Nasmyth,et al. SWI5 instability may be necessary but is not sufficient for asymmetric HO expression in yeast. , 1993, Genes & development.
[13] Tamás Turányi,et al. Time scale and dimension analysis of a budding yeast cell cycle model , 2006, BMC Bioinformatics.
[14] Tony Pawson,et al. Multisite phosphorylation of a CDK inhibitor sets a threshold for the onset of DNA replication , 2001, Nature.
[15] Costanzo Manes,et al. Whi5 phosphorylation embedded in the G1/S network dynamically controls critical cell size and cell fate , 2016, Nature Communications.
[16] Andrew W. Murray,et al. Phosphorylation by Cdc28 Activates the Cdc20-Dependent Activity of the Anaphase-Promoting Complex , 2000, The Journal of cell biology.
[17] Mike Tyers,et al. Cell cycle goes global. , 2004, Current opinion in cell biology.
[18] Frederick R. Cross,et al. APC-dependent proteolysis of the mitotic cyclin Clb2 is essential for mitotic exit , 2002, Nature.
[19] Frederick R. Cross,et al. Distinct Subcellular Localization Patterns Contribute to Functional Specificity of the Cln2 and Cln3 Cyclins of Saccharomyces cerevisiae , 2000, Molecular and Cellular Biology.
[20] A. Murray,et al. Recycling the Cell Cycle Cyclins Revisited , 2004, Cell.
[21] E. Schiebel,et al. The role of the yeast spindle pole body and the mammalian centrosome in regulating late mitotic events. , 2001, Current opinion in cell biology.
[22] Kim Nasmyth,et al. Genes involved in sister chromatid separation are needed for b-type cyclin proteolysis in budding yeast , 1995, Cell.
[23] F. Cross,et al. Coherence and timing of cell cycle start examined at single-cell resolution. , 2006, Molecular cell.
[24] Ronald W. Davis,et al. Functional profiling of the Saccharomyces cerevisiae genome , 2002, Nature.
[25] G. Braus,et al. A Process Independent of the Anaphase-promoting Complex Contributes to Instability of the Yeast S Phase Cyclin Clb5* , 2007, Journal of Biological Chemistry.
[26] Kathy Chen,et al. Network dynamics and cell physiology , 2001, Nature Reviews Molecular Cell Biology.
[27] Angelika Amon,et al. The regulation of Cdc20 proteolysis reveals a role for the APC components Cdc23 and Cdc27 during S phase and early mitosis , 1998, Current Biology.
[28] Kim Nasmyth,et al. An ESP1/PDS1 Complex Regulates Loss of Sister Chromatid Cohesion at the Metaphase to Anaphase Transition in Yeast , 1998, Cell.
[29] Curt Wittenberg,et al. Cln3 Activates G1-Specific Transcription via Phosphorylation of the SBF Bound Repressor Whi5 , 2004, Cell.
[30] S. Dorland,et al. Parallel pathways of gene regulation: homologous regulators SWI5 and ACE2 differentially control transcription of HO and chitinase. , 1992, Genes & development.
[31] Katherine C. Chen,et al. Mathematical model of the fission yeast cell cycle with checkpoint controls at the G1/S, G2/M and metaphase/anaphase transitions. , 1998, Biophysical chemistry.
[32] Pablo A. Iglesias,et al. Quantifying robustness of biochemical network models , 2002, BMC Bioinformatics.
[33] Bruce Futcher,et al. Role of a ubiquitin-conjugating enzyme in degradation of S- and M-phase cyclins , 1995, Nature.
[34] K. Hughes,et al. Regulation of flagellar assembly. , 2002, Current opinion in microbiology.
[35] A. Arkin,et al. It's a noisy business! Genetic regulation at the nanomolar scale. , 1999, Trends in genetics : TIG.
[36] M. Mendenhall,et al. An inhibitor of yeast cyclin-dependent protein kinase plays an important role in ensuring the genomic integrity of daughter cells. , 1994, Molecular and cellular biology.
[37] Michael Schwab,et al. Yeast Hct1 Is a Regulator of Clb2 Cyclin Proteolysis , 1997, Cell.
[38] E. D. Gilles,et al. Robustness vs. identifiability of regulatory modules? The case of mitotic control in budding yeast cell cycle regulation , 2001 .
[39] P. Nurse. A Long Twentieth Century of the Cell Cycle and Beyond , 2000, Cell.
[40] C. Wittenberg,et al. Rapid Degradation of the G1 Cyclin Cln2 Induced by CDK-Dependent Phosphorylation , 1996, Science.
[41] L. Hartwell,et al. Checkpoints: controls that ensure the order of cell cycle events. , 1989, Science.
[42] D. Koshland,et al. An amplified sensitivity arising from covalent modification in biological systems. , 1981, Proceedings of the National Academy of Sciences of the United States of America.
[43] F. Cross,et al. Testing a mathematical model of the yeast cell cycle. , 2002, Molecular biology of the cell.
[44] Kim Nasmyth,et al. The Polo‐like kinase Cdc5p and the WD‐repeat protein Cdc20p/fizzy are regulators and substrates of the anaphase promoting complex in Saccharomyces cerevisiae , 1998, The EMBO journal.
[45] F. Cross,et al. Two redundant oscillatory mechanisms in the yeast cell cycle. , 2003, Developmental cell.
[46] L. Breeden,et al. Periodic Transcription: A Cycle within a Cycle , 2003, Current Biology.
[47] Katherine C. Chen,et al. Kinetic analysis of a molecular model of the budding yeast cell cycle. , 2000, Molecular biology of the cell.
[48] Bin Wu,et al. A globally attractive cycle driven by sequential bifurcations containing ghost effects in a 3-node yeast cell cycle model , 2013, 1312.5204.
[49] Volkan Sevim,et al. Design Principles of the Yeast G1/S Switch , 2013, PLoS biology.
[50] Kim Nasmyth,et al. Closing the cell cycle circle in yeast: G2 cyclin proteolysis initiated at mitosis persists until the activation of G1 cyclins in the next cycle , 1994, Cell.
[51] Jiri Bartek,et al. Checking on DNA damage in S phase , 2004, Nature Reviews Molecular Cell Biology.
[52] Curt Wittenberg,et al. An essential G1 function for cyclin-like proteins in yeast , 1989, Cell.
[53] Attila Csikász-Nagy,et al. Analysis of a generic model of eukaryotic cell-cycle regulation. , 2006, Biophysical journal.
[54] J. Tyson,et al. Mathematical model for early development of the sea urchin embryo , 2000, Bulletin of mathematical biology.
[55] G S Taylor,et al. The Activity of Cdc14p, an Oligomeric Dual Specificity Protein Phosphatase from Saccharomyces cerevisiae, Is Required for Cell Cycle Progression* , 1997, The Journal of Biological Chemistry.
[56] Xiaoguang Li,et al. Energy Landscape Reveals That the Budding Yeast Cell Cycle Is a Robust and Adaptive Multi-stage Process , 2015, PLoS Comput. Biol..
[57] Frederick R. Cross,et al. Periodic Cyclin-Cdk Activity Entrains an Autonomous Cdc14 Release Oscillator , 2010, Cell.
[58] R. Deshaies,et al. SIC1 is ubiquitinated in vitro by a pathway that requires CDC4, CDC34, and cyclin/CDK activities. , 1997, Molecular biology of the cell.
[59] K Nasmyth,et al. CLB5 and CLB6, a new pair of B cyclins involved in DNA replication in Saccharomyces cerevisiae. , 1993, Genes & development.
[60] Attila Tóth,et al. APCCdc20 promotes exit from mitosis by destroying the anaphase inhibitor Pds1 and cyclin Clb5 , 1999, Nature.
[61] John J. Tyson,et al. Molecular mechanisms creating bistable switches at cell cycle transitions , 2013, Open Biology.
[62] S. Prinz,et al. CDC20 and CDH1: a family of substrate-specific activators of APC-dependent proteolysis. , 1997, Science.
[63] B. Futcher,et al. The Cln3‐Cdc28 kinase complex of S. cerevisiae is regulated by proteolysis and phosphorylation. , 1992, The EMBO journal.
[64] J. Ferrell,et al. Modeling the Cell Cycle: Why Do Certain Circuits Oscillate? , 2011, Cell.
[65] Mike Tyers,et al. Mechanisms that help the yeast cell cycle clock tick: G2 cyclins transcriptionally activate G2 cyclins and repress G1 cyclins , 1993, Cell.
[66] F. Cross,et al. Saccharomyces cerevisiae G1 cyclins differ in their intrinsic functional specificities , 1996, Molecular and cellular biology.
[67] B. Futcher. Transcriptional regulatory networks and the yeast cell cycle. , 2002, Current opinion in cell biology.
[68] D. Burke,et al. The spindle assembly and spindle position checkpoints. , 2003, Annual review of genetics.
[69] E. O’Shea,et al. Global analysis of protein expression in yeast , 2003, Nature.
[70] David O. Morgan,et al. Cyclin specificity in the phosphorylation of cyclin-dependent kinase substrates , 2005, Nature.
[71] Mike Tyers,et al. CDK Activity Antagonizes Whi5, an Inhibitor of G1/S Transcription in Yeast , 2004, Cell.
[72] G. Braus,et al. Two different modes of cyclin Clb2 proteolysis during mitosis in Saccharomyces cerevisiae , 2000, FEBS letters.
[73] Chao Tang,et al. Reliable cell cycle commitment in budding yeast is ensured by signal integration , 2014, eLife.
[74] D. Koshland,et al. The CDC20 gene product of Saccharomyces cerevisiae, a beta-transducin homolog, is required for a subset of microtubule-dependent cellular processes , 1991, Molecular and cellular biology.
[75] F. Cross,et al. Cyclin specificity: how many wheels do you need on a unicycle? , 2001, Journal of cell science.
[76] J. Skotheim,et al. Dilution of the cell cycle inhibitor Whi5 controls budding yeast cell size , 2015, Nature.
[77] Nicola J. Rinaldi,et al. Serial Regulation of Transcriptional Regulators in the Yeast Cell Cycle , 2001, Cell.
[78] S. Reed,et al. Ratchets and clocks: the cell cycle, ubiquitylation and protein turnover , 2003, Nature Reviews Molecular Cell Biology.
[79] Hongtao Yu,et al. Regulation of APC-Cdc20 by the spindle checkpoint. , 2002, Current opinion in cell biology.
[80] Q. Ouyang,et al. The yeast cell-cycle network is robustly designed. , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[81] Claude Gérard,et al. Minimal models for cell-cycle control based on competitive inhibition and multisite phosphorylations of Cdk substrates. , 2013, Biophysical journal.
[82] F. Cross,et al. Testing Cyclin Specificity in the Exit from Mitosis , 2000, Molecular and Cellular Biology.
[83] Uttam Surana,et al. The role of CDC28 and cyclins during mitosis in the budding yeast S. cerevisiae , 1991, Cell.
[84] David O. Morgan,et al. Positive feedback sharpens the anaphase switch , 2008, Nature.