Involvement of AlpV, a New Member of the Streptomyces Antibiotic Regulatory Protein Family, in Regulation of the Duplicated Type II Polyketide Synthase alp Gene Cluster in Streptomyces ambofaciens

ABSTRACT A type II polyketide synthase gene cluster located in the terminal inverted repeats of Streptomyces ambofaciens ATCC 23877 was shown to be responsible for the production of an orange pigment and alpomycin, a new antibiotic probably belonging to the angucycline/angucyclinone class. Remarkably, this alp cluster contains five potential regulatory genes, three of which (alpT, alpU, and alpV) encode proteins with high similarity to members of the Streptomyces antibiotic regulatory protein (SARP) family. Deletion of the two copies of alpV (one in each alp cluster located at the two termini) abolished pigment and antibiotic production, suggesting that AlpV acts as a transcriptional activator of the biosynthetic genes. Consistent with this idea, the transcription of alpA, which encodes a ketosynthase essential for orange pigment and antibiotic production, was impaired in the alpV mutant, while the expression of alpT, alpU, and alpZ, another regulatory gene encoding a γ-butyrolactone receptor, was not significantly affected. Real-time PCR experiments showed that transcription of alpV in the wild-type strain increases dramatically after entering the transition phase. This induction precedes that of alpA, suggesting that AlpV needs to reach a threshold level to activate the expression of the structural genes. When introduced into an S. coelicolor mutant with deletions of actII-ORF4 and redD, the SARP-encoding genes regulating the biosynthesis of actinorhodin and undecylprodigiosin, respectively, alpV was able to restore actinorhodin production only. However, actII-ORF4 did not complement the alpV mutant, suggesting that AlpV and ActII-ORF4 may act in a different way.

[1]  M. Bibb,et al.  Regulation of secondary metabolism in streptomycetes. , 2005, Current opinion in microbiology.

[2]  C. Méndez,et al.  Genetic Organization of the Biosynthetic Gene Cluster for the Antitumor Angucycline Oviedomycin in Streptomyces antibioticus ATCC 11891 , 2004, Chembiochem : a European journal of chemical biology.

[3]  S. Mangenot,et al.  Functional Angucycline-Like Antibiotic Gene Cluster in the Terminal Inverted Repeats of the Streptomyces ambofaciens Linear Chromosome , 2004, Antimicrobial Agents and Chemotherapy.

[4]  S. Fish,et al.  The tylosin-biosynthetic genes of Streptomyces fradiae , 2001, Antonie van Leeuwenhoek.

[5]  M. Bibb,et al.  A rare leucine codon in adpA is implicated in the morphological defect of bldA mutants of Streptomyces coelicolor , 2003, Molecular microbiology.

[6]  L. Vining,et al.  Control of growth, secondary metabolism and sporulation in Streptomyces venezuelae ISP5230 by jadW(1), a member of the afsA family of gamma-butyrolactone regulatory genes. , 2003, Microbiology.

[7]  D. Hoffmeister,et al.  Production of landomycins in Streptomyces globisporus 1912 and S cyanogenus S136 is regulated by genes encoding putative transcriptional activators. , 2003, FEMS microbiology letters.

[8]  G. Challis,et al.  PCR-targeted Streptomyces gene replacement identifies a protein domain needed for biosynthesis of the sesquiterpene soil odor geosmin , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[9]  T. Nihira,et al.  Identification by gene deletion analysis of barB as a negative regulator controlling an early process of virginiamycin biosynthesis in Streptomyces virginiae , 2003, Archives of Microbiology.

[10]  J. Piel,et al.  A gene cluster from a marine Streptomyces encoding the biosynthesis of the aromatic spiroketal polyketide griseorhodin A. , 2002, Chemistry & biology.

[11]  George Stratigopoulos,et al.  Regulation of tylosin production and morphological differentiation in Streptomyces fradiae by TylP, a deduced γ‐butyrolactone receptor , 2002, Molecular microbiology.

[12]  P. Mäntsälä,et al.  Cloning and characterization of Streptomyces galilaeus aclacinomycins polyketide synthase (PKS) cluster. , 2002, Gene.

[13]  C. Hutchinson,et al.  Mapping the DNA‐binding domain and target sequences of the Streptomyces peucetius daunorubicin biosynthesis regulatory protein, DnrI , 2002, Molecular microbiology.

[14]  S. Horinouchi,et al.  afsS is a target of AfsR, a transcriptional factor with ATPase activity that globally controls secondary metabolism in Streptomyces coelicolor A3(2) , 2002, Molecular microbiology.

[15]  N. Bate,et al.  Differential roles of two SARP‐encoding regulatory genes during tylosin biosynthesis , 2002, Molecular microbiology.

[16]  Eric Cundliffe,et al.  Expression analysis of the tylosin-biosynthetic gene cluster: pivotal regulatory role of the tylQ product. , 2002, Chemistry & biology.

[17]  L. Vining,et al.  A repressor-response regulator gene pair controlling jadomycin B production in Streptomyces venezuelae ISP5230. , 2001, Gene.

[18]  C. Thompson,et al.  Pleiotropic Functions of a Streptomyces pristinaespiralis Autoregulator Receptor in Development, Antibiotic Biosynthesis, and Expression of a Superoxide Dismutase* , 2001, The Journal of Biological Chemistry.

[19]  S. Salzberg,et al.  Prediction of transcription terminators in bacterial genomes. , 2000, Journal of molecular biology.

[20]  B. Wanner,et al.  One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[21]  T. Kieser Practical streptomyces genetics , 2000 .

[22]  W. Champness Actinomycete Development, Antibiotic Production, and Phylogeny: Questions and Challenges , 2000 .

[23]  A. Carnero,et al.  Cloning and characterization of a regulatory gene of the SARP family and its flanking region from Streptomyces ambofaciens , 1999, Molecular and General Genetics MGG.

[24]  M. Fernández-Moreno,et al.  Characterization of the Pathway-Specific Positive Transcriptional Regulator for Actinorhodin Biosynthesis inStreptomyces coelicolor A3(2) as a DNA-Binding Protein , 1999, Journal of bacteriology.

[25]  N. Bate,et al.  Multiple regulatory genes in the tylosin biosynthetic cluster of Streptomyces fradiae. , 1999, Chemistry & biology.

[26]  Mark J. Buttner,et al.  Evidence that the Extracytoplasmic Function Sigma Factor ςE Is Required for Normal Cell Wall Structure in Streptomyces coelicolor A3(2) , 1999, Journal of bacteriology.

[27]  M. Bibb,et al.  A response-regulator-like activator of antibiotic synthesis from Streptomyces coelicolor A3(2) with an amino-terminal domain that lacks a phosphorylation pocket. , 1998, Microbiology.

[28]  M. Bibb,et al.  A novel family of proteins that regulates antibiotic production in streptomycetes appears to contain an OmpR‐like DNA‐binding fold , 1997, Molecular microbiology.

[29]  J. Martín,et al.  A regulatory gene (ccaR) required for cephamycin and clavulanic acid production in Streptomyces clavuligerus: amplification results in overproduction of both beta-lactam compounds , 1997, Journal of bacteriology.

[30]  J. White,et al.  bldA dependence of undecylprodigiosin production in Streptomyces coelicolor A3(2) involves a pathway-specific regulatory cascade , 1997, Journal of bacteriology.

[31]  M. Bibb,et al.  afsR is a pleiotropic but conditionally required regulatory gene for antibiotic production in Streptomyces coelicolor A3(2) , 1996, Molecular microbiology.

[32]  P. Leblond,et al.  The unstable region of Streptomyces ambofaciens includes 210 kb terminal inverted repeats flanking the extremities of the linear chromosomal DNA , 1996, Molecular microbiology.

[33]  L. Vining,et al.  Regulation of jadomycin B production in Streptomyces venezuelae ISP5230: involvement of a repressor gene, jadR2 , 1995, Journal of bacteriology.

[34]  K. Madduri,et al.  Functional characterization and transcriptional analysis of a gene cluster governing early and late steps in daunorubicin biosynthesis in Streptomyces peucetius , 1995, Journal of bacteriology.

[35]  Hong Soon-Kwang,et al.  Phosphorylation of the AfsR protein involved in secondary metabolism in Streptomyces species by a eukary otic-type protein kinase , 1994 .

[36]  S. Horinouchi,et al.  Phosphorylation of the AfsR protein involved in secondary metabolism in Streptomyces species by a eukaryotic-type protein kinase. , 1994, Gene.

[37]  B. Rost,et al.  Prediction of protein secondary structure at better than 70% accuracy. , 1993, Journal of molecular biology.

[38]  M. Bibb,et al.  Stationary‐phase production of the antibiotic actinorhodin in Streptomyces coelicolor A3(2) is transcriptionally regulated , 1993, Molecular microbiology.

[39]  E. Takano,et al.  Transcriptional regulation of the redD transcriptional activator gene accounts for growth‐phase‐dependent production of the antibiotic undecylprodigiosin in Streptomyces coelicolor A3(2) , 1992, Molecular microbiology.

[40]  K. O'Brien,et al.  Plasmid cloning vectors for the conjugal transfer of DNA from Escherichia coli to Streptomyces spp. , 1992, Gene.

[41]  D. Macneil,et al.  Analysis of Streptomyces avermitilis genes required for avermectin biosynthesis utilizing a novel integration vector. , 1992, Gene.

[42]  C. Hutchinson,et al.  Regulation of secondary metabolism in Streptomyces spp. and overproduction of daunorubicin in Streptomyces peucetius , 1992, Journal of bacteriology.

[43]  M. Bibb,et al.  The use of a rare codon specifically during development? , 1991, Molecular microbiology.

[44]  J. Caballero,et al.  The act cluster contains regulatory and antibiotic export genes, direct targets for translational control by the bldA tRNA gene of streptomyces , 1991, Cell.

[45]  M. Bibb,et al.  Cloning, disruption, and transcriptional analysis of three RNA polymerase sigma factor genes of Streptomyces coelicolor A3(2) , 1990, Journal of bacteriology.

[46]  G. Evans,et al.  High efficiency vectors for cosmid microcloning and genomic analysis. , 1989, Gene.

[47]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[48]  D. Hanahan Studies on transformation of Escherichia coli with plasmids. , 1983, Journal of molecular biology.

[49]  E. Wang A new antibiotic,spiramycin , 1966 .