Alignment Accuracy Estimation
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In this chapter, we have developed described an accuracy estimator that is a linear combination of feature functions, and provided two approaches to learning the coefficients of this estimator. Chapter 3 next describes gives details of the specific features that along with this framework make up the Facet accuracy estimator. Results on using the Facet estimator with the feature functions described in the next chapter are presented in Chap. 6.
[1] John D. Kececioglu,et al. Estimating the Accuracy of Multiple Alignments and its Use in Parameter Advising , 2012, RECOMB.
[2] John D. Kececioglu,et al. Accuracy Estimation and Parameter Advising for Protein Multiple Sequence Alignment , 2013, J. Comput. Biol..