Sustained intrinsic WNT and BMP4 activation impairs hESC differentiation to definitive endoderm and drives the cells towards extra-embryonic mesoderm
暂无分享,去创建一个
K. Sermon | C. Spits | M. Geens | A. Gheldof | S. Franck | D. Dziedzicka | A. Keller | C. Markouli | M. Regin | E. C. De Deckersberg
[1] N. Benvenisty,et al. Epigenetic aberrations in human pluripotent stem cells , 2019, The EMBO journal.
[2] F. Nieuwerburgh,et al. Gain of 20q11.21 in Human Pluripotent Stem Cells Impairs TGF-β-Dependent Neuroectodermal Commitment , 2019, Stem cell reports.
[3] V. Makeev,et al. Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data , 2018, BMC Research Notes.
[4] Giovanna Ambrosini,et al. PWMScan: a fast tool for scanning entire genomes with a position-specific weight matrix , 2018, Bioinform..
[5] K. Sermon,et al. Genetic and epigenetic factors which modulate differentiation propensity in human pluripotent stem cells. , 2018, Human reproduction update.
[6] Astrid Gall,et al. Ensembl 2018 , 2017, Nucleic Acids Res..
[7] S. M. Chuva de Sousa Lopes,et al. X chromosome inactivation in human pluripotent stem cells as a model for human development: back to the drawing board? , 2017, Human reproduction update.
[8] R. Handsaker,et al. Human pluripotent stem cells recurrently acquire and expand dominant negative P53 mutations , 2017, Nature.
[9] M. Araúzo-Bravo,et al. GAA Deficiency in Pompe Disease Is Alleviated by Exon Inclusion in iPSC-Derived Skeletal Muscle Cells , 2017, Molecular therapy. Nucleic acids.
[10] Ryuji Kato,et al. Prediction of Differentiation Tendency Toward Hepatocytes from Gene Expression in Undifferentiated Human Pluripotent Stem Cells , 2016, Stem cells and development.
[11] Zhongwei Li,et al. Activin/Smad2-induced Histone H3 Lys-27 Trimethylation (H3K27me3) Reduction Is Crucial to Initiate Mesendoderm Differentiation of Human Embryonic Stem Cells* , 2016, The Journal of Biological Chemistry.
[12] K. Sermon,et al. A High Proliferation Rate is Critical for Reproducible and Standardized Embryoid Body Formation from Laminin-521-Based Human Pluripotent Stem Cell Cultures , 2016, Stem Cell Reviews and Reports.
[13] Adam A. Margolin,et al. Integrated Genomic Analysis of Diverse Induced Pluripotent Stem Cells from the Progenitor Cell Biology Consortium , 2016, Stem cell reports.
[14] S. Beck,et al. Non-CG DNA methylation is a biomarker for assessing endodermal differentiation capacity in pluripotent stem cells , 2016, Nature Communications.
[15] Antonella Galli,et al. Activin/Nodal signaling and NANOG orchestrate human embryonic stem cell fate decisions by controlling the H3K4me3 chromatin mark , 2015, Genes & development.
[16] Jing Liang,et al. Chromatin architecture reorganization during stem cell differentiation , 2015, Nature.
[17] Kai-Wei Chang,et al. Loss of non-coding RNA expression from the DLK1-DIO3 imprinted locus correlates with reduced neural differentiation potential in human embryonic stem cell lines , 2015, Stem Cell Research & Therapy.
[18] W. Huber,et al. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.
[19] N. Benvenisty,et al. Aneuploidy induces profound changes in gene expression, proliferation and tumorigenicity of human pluripotent stem cells , 2014, Nature Communications.
[20] C. Spits,et al. Gain of 20q11.21 in human embryonic stem cells improves cell survival by increased expression of Bcl-xL. , 2014, Molecular human reproduction.
[21] Andreas Krämer,et al. Causal analysis approaches in Ingenuity Pathway Analysis , 2013, Bioinform..
[22] Michael J. Ziller,et al. Transcriptional and Epigenetic Dynamics during Specification of Human Embryonic Stem Cells , 2013, Cell.
[23] Michael Q. Zhang,et al. Epigenomic Analysis of Multilineage Differentiation of Human Embryonic Stem Cells , 2013, Cell.
[24] D. Melton,et al. A simple tool to improve pluripotent stem cell differentiation , 2013, Nature Methods.
[25] C. Spits,et al. Genetic and epigenetic instability in human pluripotent stem cells. , 2013, Human reproduction update.
[26] Ming Yan,et al. RUNX1a enhances hematopoietic lineage commitment from human embryonic stem cells and inducible pluripotent stem cells. , 2012, Blood.
[27] L. Bouwens,et al. FGF signaling via MAPK is required early and improves Activin A-induced definitive endoderm formation from human embryonic stem cells. , 2012, Biochemical and biophysical research communications.
[28] Dong Ryul Lee,et al. Screening ethnically diverse human embryonic stem cells identifies a chromosome 20 minimal amplicon conferring growth advantage , 2011, Nature Biotechnology.
[29] R. Sherwood,et al. Wnt signaling specifies and patterns intestinal endoderm , 2011, Mechanisms of Development.
[30] K. Niakan,et al. BRACHYURY and CDX2 Mediate BMP-Induced Differentiation of Human and Mouse Pluripotent Stem Cells into Embryonic and Extraembryonic Lineages , 2011, Cell stem cell.
[31] Colin N. Dewey,et al. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome , 2011, BMC Bioinformatics.
[32] Michel Sadelain,et al. miR-371-3 expression predicts neural differentiation propensity in human pluripotent stem cells. , 2011, Cell stem cell.
[33] E. Wolvetang,et al. Genetic and Epigenetic Instability of Human Pluripotent Stem Cells , 2011 .
[34] Michael J. Ziller,et al. Reference Maps of Human ES and iPS Cell Variation Enable High-Throughput Characterization of Pluripotent Cell Lines , 2011, Cell.
[35] G. Lin,et al. Differences between karyotypically normal and abnormal human embryonic stem cells , 2010, Cell proliferation.
[36] M. Robinson,et al. A scaling normalization method for differential expression analysis of RNA-seq data , 2010, Genome Biology.
[37] Richard Durbin,et al. Fast and accurate long-read alignment with Burrows–Wheeler transform , 2010, Bioinform..
[38] Davis J. McCarthy,et al. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..
[39] K. Sermon,et al. Characterization of CD30 expression in human embryonic stem cell lines cultured in serum-free media and passaged mechanically. , 2009, Human reproduction.
[40] A. Casson,et al. Regulation of CDX2 expression in esophageal adenocarcinoma , 2009, Molecular carcinogenesis.
[41] M. Tomishima,et al. Highly efficient neural conversion of human ES and iPS cells by dual inhibition of SMAD signaling , 2009, Nature Biotechnology.
[42] Brad T. Sherman,et al. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists , 2008, Nucleic acids research.
[43] Chad A. Cowan,et al. Marked differences in differentiation propensity among human embryonic stem cell lines , 2008, Nature Biotechnology.
[44] G. Churchill,et al. Characterization of human embryonic stem cell lines by the International Stem Cell Initiative , 2007, Nature Biotechnology.
[45] P. Andrews,et al. Adaptation to culture of human embryonic stem cells and oncogenesis in vivo , 2007, Nature Biotechnology.
[46] Ernst Wolvetang,et al. CD30 is a survival factor and a biomarker for transformed human pluripotent stem cells , 2006, Nature Biotechnology.
[47] P. Devroey,et al. Derivation of human embryonic stem cell lines from embryos obtained after IVF and after PGD for monogenic disorders. , 2006, Human reproduction.
[48] M. Lagarkova,et al. Diverse Epigenetic Profile of Novel Human Embryonic Stem Cell Lines , 2006, Cell cycle.
[49] A. Chakravarti,et al. Genomic alterations in cultured human embryonic stem cells , 2005, Nature Genetics.
[50] Steven L. Stice,et al. Preserving the genetic integrity of human embryonic stem cells , 2005, Nature Biotechnology.
[51] R Core Team,et al. R: A language and environment for statistical computing. , 2014 .
[52] N. Bursac,et al. Stem Cell Reports , Volume 1 Supplemental Information WNT 3 Is a Biomarker Capable of Predicting the Definitive Endoderm Differentiation Potential of hESCs , 2013 .
[53] Thomas R. Gingeras,et al. STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..
[54] Brad T. Sherman,et al. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources , 2008, Nature Protocols.
[55] Suel-Kee Kim,et al. Comparative analysis of the developmental competence of three human embryonic stem cell lines in vitro. , 2007, Molecules and Cells.
[56] J. Thomson,et al. Recurrent gain of chromosomes 17q and 12 in cultured human embryonic stem cells , 2004, Nature Biotechnology.