The impact of agricultural emergence on the genetic history of African rainforest hunter-gatherers and agriculturalists

[1]  J. Bascompte,et al.  Evolutionary history and adaptation from high-coverage whole-genome sequences of diverse African hunter-gatherers , 2016 .

[2]  Laure Ségurel,et al.  Human genetic data reveal contrasting demographic patterns between sedentary and nomadic populations that predate the emergence of farming. , 2013, Molecular biology and evolution.

[3]  D. Falush,et al.  Recent Acquisition of Helicobacter pylori by Baka Pygmies , 2013, PLoS genetics.

[4]  Christian A. Williams A History of Namibia , 2013 .

[5]  Jean-Marie Hombert,et al.  Sociocultural behavior, sex-biased admixture, and effective population sizes in Central African Pygmies and non-Pygmies. , 2013, Molecular biology and evolution.

[6]  Joseph K. Pickrell,et al.  Inferring Admixture Histories of Human Populations Using Linkage Disequilibrium , 2012, Genetics.

[7]  Swapan Mallick,et al.  Ancient Admixture in Human History , 2012, Genetics.

[8]  Larsson Omberg,et al.  Patterns of Ancestry, Signatures of Natural Selection, and Genetic Association with Stature in Western African Pygmies , 2012, PLoS genetics.

[9]  S. Bahuchet Changing Language, Remaining Pygmy , 2012, Human biology.

[10]  D. Comas,et al.  Adaptive evolution of loci covarying with the human African Pygmy phenotype , 2012, Human Genetics.

[11]  M. Akawa A History of Namibia , 2012 .

[12]  O. Delaneau,et al.  A linear complexity phasing method for thousands of genomes , 2011, Nature Methods.

[13]  August E. Woerner,et al.  An early divergence of KhoeSan ancestors from those of other modern humans is supported by an ABC-based analysis of autosomal resequencing data. , 2012, Molecular biology and evolution.

[14]  D. Falush,et al.  Inference of Population Structure using Dense Haplotype Data , 2012, PLoS genetics.

[15]  Supplementary Information for: The genetic prehistory of southern Africa , 2012 .

[16]  Sameer Soi,et al.  Genetic adaptation to high altitude in the Ethiopian highlands , 2011, Genome Biology.

[17]  Noah A. Rosenberg,et al.  A General Mechanistic Model for Admixture Histories of Hybrid Populations , 2011, Genetics.

[18]  E. Heyer,et al.  Indirect evidence for the genetic determination of short stature in African Pygmies. , 2011, American journal of physical anthropology.

[19]  D. Comas,et al.  The Bantu expansion revisited: a new analysis of Y chromosome variation in Central Western Africa , 2011, Molecular ecology.

[20]  P. Visscher,et al.  Human population dispersal "Out of Africa" estimated from linkage disequilibrium and allele frequencies of SNPs. , 2011, Genome research.

[21]  J. Kinahan,et al.  A History of Namibia: From the Beginning to 1990 , 2011 .

[22]  Kenneth K. Kidd,et al.  Hunter-gatherer genomic diversity suggests a southern African origin for modern humans , 2011, Proceedings of the National Academy of Sciences.

[23]  M. Stoneking,et al.  Y-chromosomal variation in sub-Saharan Africa: insights into the history of Niger-Congo groups. , 2011, Molecular biology and evolution.

[24]  D. Behar,et al.  Insights into the demographic history of African Pygmies from complete mitochondrial genomes. , 2011, Molecular biology and evolution.

[25]  R. Scozzari,et al.  A New Topology of the Human Y Chromosome Haplogroup E1b1 (E-P2) Revealed through the Use of Newly Characterized Binary Polymorphisms , 2011, PloS one.

[26]  A. Rosa,et al.  African human mtDNA phylogeography at-a-glance. , 2011, Journal of anthropological sciences = Rivista di antropologia : JASS.

[27]  J. Felsenstein,et al.  Estimators of the human effective sex ratio detect sex biases on different timescales. , 2010, American journal of human genetics.

[28]  Harry Campbell,et al.  Genomic Runs of Homozygosity Record Population History and Consanguinity , 2010, PloS one.

[29]  A. Gylfason,et al.  Fine-scale recombination rate differences between sexes, populations and individuals , 2010, Nature.

[30]  Jeremiah D. Degenhardt,et al.  Sex-averaged recombination and mutation rates on the X chromosome: a comment on Labuda et al. , 2010, American journal of human genetics.

[31]  Guillaume Laval,et al.  Formulating a Historical and Demographic Model of Recent Human Evolution Based on Resequencing Data from Noncoding Regions , 2010, PloS one.

[32]  D. Labuda,et al.  Female-to-male breeding ratio in modern humans-an analysis based on historical recombinations. , 2010, American journal of human genetics.

[33]  David H. Alexander,et al.  Fast model-based estimation of ancestry in unrelated individuals. , 2009, Genome research.

[34]  D. Comas,et al.  Genetic and demographic implications of the Bantu expansion: insights from human paternal lineages. , 2009, Molecular biology and evolution.

[35]  D. Reich,et al.  Sensitive Detection of Chromosomal Segments of Distinct Ancestry in Admixed Populations , 2009, PLoS genetics.

[36]  John Novembre,et al.  Global distribution of genomic diversity underscores rich complex history of continental human populations. , 2009, Genome research.

[37]  G. Perry,et al.  Evolution of the human pygmy phenotype. , 2009, Trends in ecology & evolution.

[38]  Jean-Marie Hombert,et al.  Inferring the Demographic History of African Farmers and Pygmy Hunter–Gatherers Using a Multilocus Resequencing Data Set , 2009, PLoS genetics.

[39]  Luigi Ferrucci,et al.  Measures of Autozygosity in Decline: Globalization, Urbanization, and Its Implications for Medical Genetics , 2009, PLoS genetics.

[40]  Jean-Marie Hombert,et al.  Origins and Genetic Diversity of Pygmy Hunter-Gatherers from Western Central Africa , 2009, Current Biology.

[41]  Gary K. Chen,et al.  Fast and flexible simulation of DNA sequence data. , 2008, Genome research.

[42]  M. Feldman,et al.  Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation , 2008 .

[43]  K. Kidd,et al.  Maternal traces of deep common ancestry and asymmetric gene flow between Pygmy hunter–gatherers and Bantu-speaking farmers , 2008, Proceedings of the National Academy of Sciences.

[44]  Zhaohui S. Qin,et al.  A second generation human haplotype map of over 3.1 million SNPs , 2007, Nature.

[45]  Manuel A. R. Ferreira,et al.  PLINK: a tool set for whole-genome association and population-based linkage analyses. , 2007, American journal of human genetics.

[46]  A. Auton,et al.  Recombination rate estimation in the presence of hotspots. , 2007, Genome research.

[47]  F. Crivellaro,et al.  Tracing past human male movements in northern/eastern Africa and western Eurasia: new clues from Y-chromosomal haplogroups E-M78 and J-M12. , 2007, Molecular biology and evolution.

[48]  Laurent Excoffier,et al.  Arlequin (version 3.0): An integrated software package for population genetics data analysis , 2005, Evolutionary bioinformatics online.

[49]  D. Reich,et al.  Population Structure and Eigenanalysis , 2006, PLoS genetics.

[50]  Naoki Matsuura SEDENTARY LIFESTYLE AND SOCIAL RELATIONSHIP AMONG BABONGO IN SOUTHERN GABON , 2006 .

[51]  Zhaohui S. Qin,et al.  A comparison of phasing algorithms for trios and unrelated individuals. , 2006, American journal of human genetics.

[52]  R. Hudson,et al.  Interrogating multiple aspects of variation in a full resequencing data set to infer human population size changes. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[53]  Giovanni Destro-Bisol,et al.  Contrasting patterns of Y chromosome and mtDNA variation in Africa: evidence for sex-biased demographic processes , 2005, European Journal of Human Genetics.

[54]  Mark Daly,et al.  Haploview: analysis and visualization of LD and haplotype maps , 2005, Bioinform..

[55]  W. G. Hill,et al.  Linkage disequilibrium in finite populations , 1968, Theoretical and Applied Genetics.

[56]  C. Capelli,et al.  Variation of female and male lineages in sub-Saharan populations: the importance of sociocultural factors. , 2004, Molecular biology and evolution.

[57]  A. Torroni,et al.  Phylogeographic analysis of haplogroup E3b (E-M215) y chromosomes reveals multiple migratory events within and out of Africa. , 2004, American journal of human genetics.

[58]  Giovanni Destro-Bisol,et al.  The effective mutation rate at Y chromosome short tandem repeats, with application to human population-divergence time. , 2004, American journal of human genetics.

[59]  D. Joiris The framework of Central African hunter-gatherers and neighbouring societies , 2003 .

[60]  J. Diamond,et al.  Farmers and Their Languages: The First Expansions , 2003, Science.

[61]  P. Visscher,et al.  Novel multilocus measure of linkage disequilibrium to estimate past effective population size. , 2003, Genome research.

[62]  E. Cornelissen Human Responses to Changing Environments in Central Africa Between 40,000 and 12,000 B.P. , 2002 .

[63]  C. Holden,et al.  Bantu language trees reflect the spread of farming across sub-Saharan Africa: a maximum-parsimony analysis , 2002, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[64]  L. Phillipson Book Review: Cambridge Monographs in African Archaeology 30–40 , 2002 .

[65]  C. Ehret Bantu Expansions: Re-Envisioning a Central Problem of Early African History , 2001 .

[66]  D. Schoenbrun Representing the Bantu expansions: What's at stake? , 2001 .

[67]  S. Bahuchet Fragments pour une histoire de la for^ et africaine et de son peuplement : les donn ees linguistiques et culturelles , 1996 .

[68]  A. Froment Adaptation biologique et variation dans l'espèce humaine : le cas des Pygmées d'Afrique , 1993 .

[69]  J. Vansina Western Bantu Expansion , 1984, The Journal of African History.

[70]  A. Barnard,et al.  Politics and History in Band Societies , 1982 .

[71]  D. Phillipson The Chronology of the Iron Age in Bantu Africa , 1975, The Journal of African History.

[72]  J. Hiernaux The People Of Africa , 1974 .

[73]  J. Greenberg Linguistic evidence regarding Bantu origins , 1972, The Journal of African History.

[74]  C. Turnbull,et al.  Wayward servants : the two worlds of the African pygmies , 1967 .

[75]  R. Gates The African Pygmies , 1958, Nature.

[76]  Leroy Pygmées d'Afrique , 1897 .