Diffraction data analysis in the presence of radiation damage
暂无分享,去创建一个
Zbyszek Otwinowski | Wladek Minor | Marcin Cymborowski | Dominika Borek | Z. Otwinowski | M. Machius | W. Minor | M. Cymborowski | D. Borek | Mischa Machius
[1] G. Bricogne,et al. Modelling and refining site-specific radiation damage in SAD/MAD phasing. , 2007, Journal of synchrotron radiation.
[2] S. Arnott,et al. The refinement of the crystal and molecular structures of polymers using X-ray data and stereochemical constraints , 1966 .
[3] J. Ferrer,et al. X-ray-induced debromination of nucleic acids at the Br K absorption edge and implications for MAD phasing. , 2002, Acta crystallographica. Section D, Biological crystallography.
[4] Elspeth F Garman,et al. Absorbed dose calculations for macromolecular crystals: improvements to RADDOSE. , 2009, Journal of synchrotron radiation.
[5] G Bricogne,et al. Can anomalous signal of sulfur become a tool for solving protein crystal structures? , 1999, Journal of molecular biology.
[6] E. Garman,et al. Physical and chemical considerations of damage induced in protein crystals by synchrotron radiation: a radiation chemical perspective. , 2002, Journal of synchrotron radiation.
[7] S. Arnott,et al. LALS: a linked‐atom least‐squares reciprocal‐space refinement system incorporating stereochemical restraints to supplement sparse diffraction data , 1978 .
[8] R. Leapman,et al. Cryo-electron energy loss spectroscopy: observations on vitrified hydrated specimens and radiation damage. , 1995, Ultramicroscopy.
[9] J Otlewski,et al. Ultrahigh-resolution structure of a BPTI mutant. , 2001, Acta crystallographica. Section D, Biological crystallography.
[10] Uwe Bergmann,et al. X-ray damage to the Mn4Ca complex in single crystals of photosystem II: a case study for metalloprotein crystallography. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[11] R. McKenna,et al. Structure determination of the cancer-associated Mycoplasma hyorhinis protein Mh-p37. , 2008, Acta crystallographica. Section D, Biological crystallography.
[12] G. Langlet,et al. International Tables for Crystallography , 2002 .
[13] Manfred S. Weiss,et al. Global indicators of X-ray data quality , 2001 .
[14] 良二 上田. J. Appl. Cryst.の発刊に際して , 1970 .
[15] J. Sussman,et al. Specific protein dynamics near the solvent glass transition assayed by radiation‐induced structural changes , 2001, Protein science : a publication of the Protein Society.
[16] G Bricogne,et al. Phasing in the presence of severe site-specific radiation damage through dose-dependent modelling of heavy atoms. , 2004, Acta crystallographica. Section D, Biological crystallography.
[17] W. Bors,et al. [2] Pulse radiolysis for investigation of nitric oxide-related reactions , 1994 .
[18] A. N. Popov,et al. Choice of data-collection parameters based on statistic modelling. , 2003, Acta crystallographica. Section D, Biological crystallography.
[19] W. Burmeister,et al. Structural changes in a cryo-cooled protein crystal owing to radiation damage. , 2000, Acta crystallographica. Section D, Biological crystallography.
[20] Zbigniew Dauter,et al. Biological Crystallography Structural Effects of Radiation Damage and Its Potential for Phasing , 2022 .
[21] E. Garman,et al. Investigation of possible free-radical scavengers and metrics for radiation damage in protein cryocrystallography. , 2002, Journal of synchrotron radiation.
[22] Sean McSweeney,et al. Zero-dose extrapolation as part of macromolecular synchrotron data reduction. , 2003, Acta crystallographica. Section D, Biological crystallography.
[23] Zbyszek Otwinowski,et al. The many faces of radiation-induced changes. , 2007, Journal of synchrotron radiation.
[24] W. Gordy,et al. TEMPERATURE EFFECTS ON FREE RADICAL FORMATION AND ELECTRON MIGRATION IN IRRADIATED PROTEINS. , 1960, Proceedings of the National Academy of Sciences of the United States of America.
[25] L. Nowicki,et al. Radiation stability of fluorite-type nuclear oxides , 2008 .
[26] R. Ravelli,et al. The 'fingerprint' that X-rays can leave on structures. , 2000, Structure.
[27] R. Ravelli,et al. Differential specific radiation damage in the Cu II-bound and Pd II-bound forms of an alpha-helical foldamer: a case study of crystallographic phasing by RIP and SAD. , 2008, Acta crystallographica. Section D, Biological crystallography.
[28] Z. Otwinowski,et al. [20] Processing of X-ray diffraction data collected in oscillation mode. , 1997, Methods in enzymology.
[29] C. Giacovazzo,et al. On integrating direct methods and isomorphous-replacement techniques: triplet estimation and treatment of errors. , 2001, Acta crystallographica. Section A, Foundations of crystallography.
[30] E. Fedorov,et al. Radiation-induced site-specific damage of mercury derivatives: phasing and implications. , 2005, Acta crystallographica. Section D, Biological crystallography.
[31] R. Henderson. The potential and limitations of neutrons, electrons and X-rays for atomic resolution microscopy of unstained biological molecules , 1995, Quarterly Reviews of Biophysics.
[32] J L Sussman,et al. Specific chemical and structural damage to proteins produced by synchrotron radiation. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[33] Wladek Minor,et al. Measurement errors and their consequences in protein crystallography. , 2003, Acta crystallographica. Section D, Biological crystallography.
[34] Parameters affecting the X-ray dose absorbed by macromolecular crystals. , 2005, Journal of synchrotron radiation.
[35] J. Holton,et al. XANES measurements of the rate of radiation damage to selenomethionine side chains. , 2007, Journal of synchrotron radiation.
[36] J. Ferrara,et al. Optics systems for the home laboratory: caveat emptor. , 1999, Acta Crystallographica Section D: Biological Crystallography.
[37] Naji S Husseini,et al. Quantifying X-ray radiation damage in protein crystals at cryogenic temperatures. , 2006, Acta crystallographica. Section D, Biological crystallography.
[38] M. Caffrey,et al. Unit-cell volume change as a metric of radiation damage in crystals of macromolecules. , 2002, Journal of synchrotron radiation.
[39] A. N. Popov,et al. A quantitative approach to data-collection strategies. , 2006, Acta crystallographica. Section D, Biological crystallography.
[40] G. G. Stokes. "J." , 1890, The New Yale Book of Quotations.
[41] A. N. Tikhonov,et al. Solutions of ill-posed problems , 1977 .
[42] Sean McSweeney,et al. Specific radiation damage can be used to solve macromolecular crystal structures. , 2003, Structure.
[43] H. Gray,et al. Electron Tunneling Through Organic Molecules in Frozen Glasses , 2005, Science.
[44] S. Kulmala,et al. Intrinsic and 1-aminonaphthalene-4-sulfonate-specific extrinsic lyoluminescences of X-ray irradiated sodium chloride , 1997 .
[45] Elspeth F Garman,et al. Experimental determination of the radiation dose limit for cryocooled protein crystals. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[46] Z. Otwinowski,et al. Multiparametric scaling of diffraction intensities. , 2003, Acta crystallographica. Section A, Foundations of crystallography.
[47] Z. Otwinowski,et al. Structural and biochemical basis for polyamine binding to the Tp0655 lipoprotein of Treponema pallidum: putative role for Tp0655 (TpPotD) as a polyamine receptor. , 2007, Journal of molecular biology.
[48] Wladek Minor,et al. HKL-3000: the integration of data reduction and structure solution--from diffraction images to an initial model in minutes. , 2006, Acta crystallographica. Section D, Biological crystallography.
[49] William H Massover,et al. Radiation damage to protein specimens from electron beam imaging and diffraction: a mini-review of anti-damage approaches, with special reference to synchrotron X-ray crystallography. , 2007, Journal of synchrotron radiation.
[50] Radiation-damage-induced phasing with anomalous scattering: substructure solution and phasing. , 2004, Acta crystallographica. Section D, Biological crystallography.