Changes in the microbial communities during co-composting of digestates

Highlights • Highest degradation rates in compost in first 14 days.• Similar microbial communities in digestate and screened compost samples.• Fewer and lower signals in all starting materials than in day 20, 34 and 63 composts.• Compost microbial communities changed over 63 day composting process.

[1]  S. M. Tiquia.  Microbial Community Dynamics in Manure Composts Based on 16S and 18S rDNA T-RFLP Profiles , 2005, Environmental technology.

[2]  George A. Kowalchuk,et al.  Molecular Analysis of Ammonia-Oxidizing Bacteria of the β Subdivision of the Class Proteobacteria in Compost and Composted Materials , 1999, Applied and Environmental Microbiology.

[3]  W. Brinton,et al.  Evidence for the prominence of well characterized mesophilic bacteria in thermophilic (50–70°C) composting environments , 1995 .

[4]  F. Scheffer,et al.  Lehrbuch der Bodenkunde , 1971, Anzeiger für Schädlingskunde und Pflanzenschutz.

[5]  Jizhong Zhou,et al.  Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples. , 2004, BioTechniques.

[6]  J. Coosemans,et al.  Microbiological aspects of biowaste during composting in a monitored compost bin , 2003, Journal of applied microbiology.

[7]  H. Kausar,et al.  Isolation and screening of potential actinobacteria for rapid composting of rice straw , 2011, Biodegradation.

[8]  I. Franke-Whittle,et al.  Microbiological community analysis of vermicompost tea and its influence on the growth of vegetables and cereals. , 2012, Canadian journal of microbiology.

[9]  J. Lalucat,et al.  Biology of Pseudomonas stutzeri , 2006, Microbiology and Molecular Biology Reviews.

[10]  M. Díaz-Raviña,et al.  Microbiological characterization of four composted urban refuses , 1989 .

[11]  P. Auvinen,et al.  Bacterial diversity at different stages of the composting process , 2010, BMC Microbiology.

[12]  J. A. Alburquerque,et al.  Recycling of anaerobic digestates by composting: effect of the bulking agent used , 2013 .

[13]  H. Insam,et al.  Biowaste: a Lactobacillus habitat and lactic acid fermentation substrate. , 2013, Bioresource technology.

[14]  H. Insam,et al.  Application of COMPOCHIP Microarray to Investigate the Bacterial Communities of Different Composts , 2009, Microbial Ecology.

[15]  H. Insam,et al.  Molecular analysis of bacterial community succession during prolonged compost curing. , 2008, FEMS microbiology ecology.

[16]  M. Bertoldi,et al.  The Biology of Composting: a Review , 1983 .

[17]  P. Bishop,et al.  Isolation of Nitrogen-Fixing Bacteria Containing Molybdenum-Independent Nitrogenases from Natural Environments , 1999, Applied and Environmental Microbiology.

[18]  Håkan Jönsson,et al.  Effects of pH and microbial composition on odour in food waste composting , 2013, Waste management.

[19]  Nozomi Yamamoto,et al.  Archaeal community dynamics and detection of ammonia-oxidizing archaea during composting of cattle manure using culture-independent DNA analysis , 2011, Applied Microbiology and Biotechnology.

[20]  W. Verstraete.  Heterotrophic nitrification in soils and aqueous media (a review) , 1975 .

[21]  H. Insam,et al.  Effect of Inoculum Standardization on Community Level Physiological Profiles Of Compost Samples , 2005 .

[22]  B. Ward,et al.  Oligonucleotide Microarray for the Study of Functional Gene Diversity in the Nitrogen Cycle in the Environment , 2003, Applied and Environmental Microbiology.

[23]  D. Haas,et al.  Biological control of soil-borne pathogens by fluorescent pseudomonads , 2005, Nature Reviews Microbiology.

[24]  K. Schleifer,et al.  Oligonucleotide Microarray for 16S rRNA Gene-Based Detection of All Recognized Lineages of Sulfate-Reducing Prokaryotes in the Environment , 2002, Applied and Environmental Microbiology.

[25]  I. J. Hodgkiss,et al.  Microbial activities during composting of spent pig-manure sawdust litter at different moisture contents , 1996 .

[26]  I. Franke-Whittle,et al.  Microbes in Aerobic and Anaerobic Waste Treatment , 2010 .

[27]  D. Capone.  Nitrogen Cycle in the Marine Environment , 2003 .

[28]  J. A. Alburquerque,et al.  Co-composting of the solid fraction of anaerobic digestates, to obtain added-value materials for use in agriculture , 2012 .

[29]  M. Madigan,et al.  Brock Biology of Microorganisms , 1996 .

[30]  C. Sundberg,et al.  Characterisation of source-separated household waste intended for composting , 2011, Bioresource technology.

[31]  Heribert Insam,et al.  Design and application of an oligonucleotide microarray for the investigation of compost microbial communities. , 2005, Journal of microbiological methods.

[32]  L. Zelles,et al.  Emission of Climate-Relevant Trace Gases and Succession of Microbial Communities during Open-Windrow Composting , 1997, Applied and environmental microbiology.

[33]  K. Schleifer,et al.  ARB: a software environment for sequence data. , 2004, Nucleic acids research.

[34]  W. Verstraete.  Heterotrophic Nitrification by , 1972 .

[35]  Ter Braak,et al.  Canoco reference manual and CanoDraw for Windows user''s guide: software for canonical community ord , 2002 .

[36]  Seokhwan Hwang,et al.  A comprehensive microbial insight into two-stage anaerobic digestion of food waste-recycling wastewater. , 2010, Water research.

[37]  S. Sommer,et al.  Nutrient and carbon balance during the composting of deep litter , 1999 .

[38]  Z. Yu,et al.  Isolation and characterization of two thermophilic cellulolytic strains of Clostridium thermocellum from a compost sample , 2013, Journal of applied microbiology.

[39]  I. Franke-Whittle,et al.  Plant and animal wastes composting: effects of the N source on process performance. , 2009, Bioresource technology.

[40]  S. Gajalakshmi,et al.  Solid Waste Management by Composting: State of the Art , 2008 .

[41]  Dirk De Clercq,et al.  A survey of bacteria and fungi occurring during composting and self-heating processes , 2003 .

[42]  M. Mizuochi,et al.  Nitrous oxide emissions from aerated composting of organic waste. , 2001, Environmental science & technology.

[43]  H. Insam,et al.  Soil microbial dynamics in organic (biodynamic) and integrated apple orchards , 2012, Organic Agriculture.

[44]  Methods for Health Risk Assessment by Clostridium botulinum in Biocompost , 2002 .

[45]  H. Insam,et al.  Microbial Community Dynamics During Composting of Organic Matter as Determined by 16S Ribosomal DNA Analysis , 2002 .