Prevalence of Flp Pili-Encoding Plasmids in Cutibacterium acnes Isolates Obtained from Prostatic Tissue

Inflammation is one of the hallmarks of prostate cancer. The origin of inflammation is unknown, but microbial infections are suspected to play a role. In previous studies, the Gram-positive, low virulent bacterium Cutibacterium (formerly Propionibacterium) acnes was frequently isolated from prostatic tissue. It is unclear if the presence of the bacterium represents a true infection or a contamination. Here we investigated Cutibacterium acnes type II, also called subspecies defendens, which is the most prevalent type among prostatic C. acnes isolates. Genome sequencing of type II isolates identified large plasmids in several genomes. The plasmids are highly similar to previously identified linear plasmids of type I C. acnes strains associated with acne vulgaris. A PCR-based analysis revealed that 28.4% (21 out of 74) of all type II strains isolated from cancerous prostates carry a plasmid. The plasmid shows signatures for conjugative transfer. In addition, it contains a gene locus for tight adherence (tad) that is predicted to encode adhesive Flp (fimbrial low-molecular weight protein) pili. In subsequent experiments a tad locus-encoded putative pilin subunit was identified in the surface-exposed protein fraction of plasmid-positive C. acnes type II strains by mass spectrometry, indicating that the tad locus is functional. Additional plasmid-encoded proteins were detected in the secreted protein fraction, including two signal peptide-harboring proteins; the corresponding genes are specific for type II C. acnes, thus lacking from plasmid-positive type I C. acnes strains. Further support for the presence of Flp pili in C. acnes type II was provided by electron microscopy, revealing cell appendages in tad locus-positive strains. Our study provides new insight in the most prevalent prostatic subspecies of C. acnes, subsp. defendens, and indicates the existence of Flp pili in plasmid-positive strains. Such pili may support colonization and persistent infection of human prostates by C. acnes.

[1]  V. Calvez,et al.  Characterization of a Propionibacterium acnes Surface Protein as a Fibrinogen-Binding Protein , 2017, Scientific Reports.

[2]  Alan D. Lopez,et al.  Global, Regional, and National Cancer Incidence, Mortality, Years of Life Lost, Years Lived With Disability, and Disability-Adjusted Life-years for 32 Cancer Groups, 1990 to 2015: A Systematic Analysis for the Global Burden of Disease Study , 2017, JAMA oncology.

[3]  H. Brüggemann,et al.  Propionibacterium Acnes Phylogenetic Type III is Associated with Progressive Macular Hypomelanosis , 2017, European journal of microbiology & immunology.

[4]  Y. Eishi,et al.  Frequency of Propionibacterium acnes Infection in Prostate Glands with Negative Biopsy Results Is an Independent Risk Factor for Prostate Cancer in Patients with Increased Serum PSA Titers , 2017, PLoS ONE.

[5]  E. Barnard,et al.  Corrigendum: Proposal to reclassify Propionibacterium acnes type I as Propionibacterium acnes subsp. acnes subsp. nov. and Propionibacterium acnes type II as Propionibacterium acnes subsp. defendens subsp. nov. , 2016, International journal of systematic and evolutionary microbiology.

[6]  V. Calvez,et al.  TLR-2 Recognizes Propionibacterium acnes CAMP Factor 1 from Highly Inflammatory Strains , 2016, PloS one.

[7]  Yang Yu,et al.  Different Propionibacterium acnes Phylotypes Induce Distinct Immune Responses and Express Unique Surface and Secreted Proteomes. , 2016, The Journal of investigative dermatology.

[8]  M. Kilian,et al.  The natural history of cutaneous propionibacteria, and reclassification of selected species within the genus Propionibacterium to the proposed novel genera Acidipropionibacterium gen. nov., Cutibacterium gen. nov. and Pseudopropionibacterium gen. nov. , 2016, International journal of systematic and evolutionary microbiology.

[9]  G. Muth,et al.  Conjugative DNA-transfer in Streptomyces, a mycelial organism. , 2016, Plasmid.

[10]  H. Brüggemann The emerging role of propionibacteria in human health and disease , 2016 .

[11]  Jennifer R. Rider,et al.  Frequency and typing of Propionibacterium acnes in prostate tissue obtained from men with and without prostate cancer , 2016, Infectious Agents and Cancer.

[12]  H. Tettelin,et al.  Genome stability of Propionibacterium acnes: a comprehensive study of indels and homopolymeric tracts , 2016, Scientific Reports.

[13]  D. Linke,et al.  A Multiprotein DNA Translocation Complex Directs Intramycelial Plasmid Spreading during Streptomyces Conjugation , 2015, mBio.

[14]  S. Tomida,et al.  The diversity and host interactions of Propionibacterium acnes bacteriophages on human skin , 2015, The ISME Journal.

[15]  B. Kuster,et al.  Novel Flp pilus biogenesis-dependent natural transformation , 2015, Front. Microbiol..

[16]  J. Enghild,et al.  Proteome Analysis of Human Sebaceous Follicle Infundibula Extracted from Healthy and Acne-Affected Skin , 2014, PloS one.

[17]  H. Brüggemann,et al.  A Novel High-Resolution Single Locus Sequence Typing Scheme for Mixed Populations of Propionibacterium acnes In Vivo , 2014, PloS one.

[18]  T. Coenye,et al.  Propionibacterium acnes: from Commensal to Opportunistic Biofilm-Associated Implant Pathogen , 2014, Clinical Microbiology Reviews.

[19]  I. Thompson,et al.  Chronic Inflammation in Benign Prostate Tissue Is Associated with High-Grade Prostate Cancer in the Placebo Arm of the Prostate Cancer Prevention Trial , 2014, Cancer Epidemiology, Biomarkers & Prevention.

[20]  B. Dréno,et al.  Propionibacterium acnes: an update on its role in the pathogenesis of acne , 2014, Journal of the European Academy of Dermatology and Venereology : JEADV.

[21]  Y. Eishi,et al.  Intracellular Propionibacterium acnes Infection in Glandular Epithelium and Stromal Macrophages of the Prostate with or without Cancer , 2014, PloS one.

[22]  Koichiro Tamura,et al.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. , 2013, Molecular biology and evolution.

[23]  E. Barnard,et al.  The Opportunistic Pathogen Propionibacterium acnes: Insights into Typing, Human Disease, Clonal Diversification and CAMP Factor Evolution , 2013, PloS one.

[24]  E. Le Cam,et al.  A Type IV Pilus Mediates DNA Binding during Natural Transformation in Streptococcus pneumoniae , 2013, PLoS pathogens.

[25]  S. Tomida,et al.  Analysis of Complete Genomes of Propionibacterium acnes Reveals a Novel Plasmid and Increased Pseudogenes in an Acne Associated Strain , 2013, BioMed research international.

[26]  A. D. De Marzo,et al.  Multilocus sequence typing (MLST) analysis of Propionibacterium acnes isolates from radical prostatectomy specimens , 2013, The Prostate.

[27]  G. Weinstock,et al.  Pan-Genome and Comparative Genome Analyses of Propionibacterium acnes Reveal Its Genomic Diversity in the Healthy and Diseased Human Skin Microbiome , 2013, mBio.

[28]  David Elashoff,et al.  Propionibacterium acnes strain populations in the human skin microbiome associated with acne , 2013, The Journal of investigative dermatology.

[29]  H. Mollenkopf,et al.  Propionibacterium acnes host cell tropism contributes to vimentin‐mediated invasion and induction of inflammation , 2012, Cellular microbiology.

[30]  J. Cove,et al.  An Expanded Multilocus Sequence Typing Scheme for Propionibacterium acnes: Investigation of ‘Pathogenic’, ‘Commensal’ and Antibiotic Resistant Strains , 2012, PloS one.

[31]  Sergey I. Nikolenko,et al.  SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing , 2012, J. Comput. Biol..

[32]  H. Tettelin,et al.  CRISPR/cas Loci of Type II Propionibacterium acnes Confer Immunity against Acquisition of Mobile Elements Present in Type I P. acnes , 2012, PloS one.

[33]  Dena Lyras,et al.  The conjugation protein TcpC from Clostridium perfringens is structurally related to the type IV secretion system protein VirB8 from Gram‐negative bacteria , 2012, Molecular microbiology.

[34]  A. D. De Marzo,et al.  Prostate cancer and inflammation: the evidence , 2012, Histopathology.

[35]  M. Kilian,et al.  Multilocus Sequence Typing and Phylogenetic Analysis of Propionibacterium acnes , 2011, Journal of Clinical Microbiology.

[36]  David S. Roos,et al.  Identification of Surprisingly Diverse Type IV Pili, across a Broad Range of Gram-Positive Bacteria , 2011, PloS one.

[37]  P. Lambert,et al.  Propionibacterium acnes: infection beyond the skin , 2011, Expert review of anti-infective therapy.

[38]  Nicola K. Petty,et al.  BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons , 2011, BMC Genomics.

[39]  Colin G Fink,et al.  A novel multilocus sequence typing scheme for the opportunistic pathogen Propionibacterium acnes and characterization of type I cell surface-associated antigens. , 2011, Microbiology.

[40]  Aldert L. Zomer,et al.  Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor , 2011, Proceedings of the National Academy of Sciences.

[41]  Chun-Ming Huang,et al.  Passive immunoprotection targeting a secreted CAMP factor of Propionibacterium acnes as a novel immunotherapeutic for acne vulgaris. , 2011, Vaccine.

[42]  Chun-Ming Huang,et al.  Propionibacterium acnes CAMP Factor and Host Acid Sphingomyelinase Contribute to Bacterial Virulence: Potential Targets for Inflammatory Acne Treatment , 2011, PloS one.

[43]  H. Mollenkopf,et al.  Prevalence of Propionibacterium acnes in diseased prostates and its inflammatory and transforming activity on prostate epithelial cells. , 2011, International journal of medical microbiology : IJMM.

[44]  H. Mollenkopf,et al.  Mutagenesis of Propionibacterium acnes and analysis of two CAMP factor knock-out mutants. , 2010, Journal of microbiological methods.

[45]  T. Meyer,et al.  Proteomic identification of secreted proteins of Propionibacterium acnes , 2010, BMC Microbiology.

[46]  M. Kilian,et al.  Population Genetic Analysis of Propionibacterium acnes Identifies a Subpopulation and Epidemic Clones Associated with Acne , 2010, PloS one.

[47]  W. Isaacs,et al.  A molecular analysis of prokaryotic and viral DNA sequences in prostate tissue from patients with prostate cancer indicates the presence of multiple and diverse microorganisms , 2008, The Prostate.

[48]  Rick L. Stevens,et al.  The RAST Server: Rapid Annotations using Subsystems Technology , 2008, BMC Genomics.

[49]  F. Elgh,et al.  Direct Visualization of Propionibacterium acnes in Prostate Tissue by Multicolor Fluorescent In Situ Hybridization Assay , 2007, Journal of Clinical Microbiology.

[50]  M. Tomich,et al.  The tad locus: postcards from the widespread colonization island , 2007, Nature Reviews Microbiology.

[51]  Jianfeng Xu,et al.  Inflammation in prostate carcinogenesis , 2007, Nature Reviews Cancer.

[52]  D. Persing,et al.  Variable expression of immunoreactive surface proteins of Propionibacterium acnes. , 2006, Microbiology.

[53]  M. Tomich,et al.  The TadV Protein of Actinobacillus actinomycetemcomitans Is a Novel Aspartic Acid Prepilin Peptidase Required for Maturation of the Flp1 Pilin and TadE and TadF Pseudopilins , 2006, Journal of bacteriology.

[54]  J. McNeal,et al.  Propionibacterium acnes associated with inflammation in radical prostatectomy specimens: a possible link to cancer evolution? , 2005, The Journal of urology.

[55]  J. Glenn,et al.  Propionibacterium acnes Types I and II Represent Phylogenetically Distinct Groups , 2005, Journal of Clinical Microbiology.

[56]  D. Clewell,et al.  Conjugation in Gram-Positive Bacteria , 2004 .

[57]  D. Fine,et al.  Tight-adherence genes of Actinobacillus actinomycetemcomitans are required for virulence in a rat model , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[58]  R. Lurz,et al.  The VirB4 Family of Proposed Traffic Nucleoside Triphosphatases: Common Motifs in Plasmid RP4 TrbE Are Essential for Conjugation and Phage Adsorption , 2003, Journal of bacteriology.

[59]  R. DeSalle,et al.  Nonspecific Adherence by Actinobacillus actinomycetemcomitans Requires Genes Widespread inBacteria and Archaea , 2000, Journal of bacteriology.

[60]  S. Aizawa,et al.  Flagellar proteins and type III‐exported virulence factors are the predominant proteins secreted into the culture media of Salmonella typhimurium , 1999, Molecular microbiology.

[61]  J. Barendregt,et al.  Global burden of disease , 1997, The Lancet.