论文信息 - Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins - eScholarship - 字舞流文

Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins - eScholarship

Genotypic differences greatly influence susceptibility and resistance to disease. Understanding genotype-phenotype relationships requires that phenotypes be viewed as manifestations of network properties, rather than simply as the result of individual geno

James T. Webber | Alyce A. Chen | Brijesh K. Garg | John Quackenbush | R. Beroukhim | M. Calderwood | Amy M. Holthaus | E. Kieff | E. Johannsen | A. Dricot | M. Cusick | M. Tasan | O. Rozenblatt-Rosen | Changyu Fan | S. Ficarro | N. Gulbahce | R. Deo | M. Padi | G. Adelmant | T. Rolland | M. Grace | M. Askenazi | M. Tavares | Samuel J. Pevzner | Fieda Abderazzaq | Danielle Byrdsong | Anne-Ruxandra Carvunis | M. Correll | Melissa Duarte | M. Feltkamp | R. Franchi | Robert James | Anna Korkhin | J. Mar | T. Pak | Yun Shen | Saurav Singh | J. Spangle | S. Wanamaker | K. Münger | J. Marto | J. Decaprio | Rc Deo | F. Roth | J. Roecklein-Canfield | Jingwei Cheng | Marc Vidal | Tong Hao | A. Barabási | Maria Tavares | Amélie Dricot | Larisa Litovchick | D. Hill | SabrinaRabello | ReneeRubio | Yun A Shen | D. Hill

[1] J Alter,et al. Progress and Promise , 1919, Nature.

[2] T. Taniguchi,et al. Cooperation of the tumour suppressors IRF-1 and p53 in response to DNA damage , 1996, Nature.

[3] Chris Sander,et al. Characterizing gene sets with FuncAssociate , 2003, Bioinform..

[4] G. Collins. The next generation. , 2006, Scientific American.

[5] R. Tibbetts,et al. Molecular Linkage Between the Kinase ATM and NF-κB Signaling in Response to Genotoxic Stimuli , 2006, Science.

[6] W. Pear,et al. Impaired notch signaling promotes de novo squamous cell carcinoma formation. , 2006, Cancer research.

[7] J. Rogers,et al. hORFeome v3.1: A resource of human open reading frames representing over 10,000 human genes , 2007, Genomics.

[8] A. Vazquez,et al. Epstein–Barr virus and virus human protein interaction maps , 2007, Proceedings of the National Academy of Sciences.

[9] S. V. Vande Pol,et al. Association of E6AP (UBE3A) with human papillomavirus type 11 E6 protein. , 2007, Virology.

[10] S. Smola,et al. Spontaneous tumour development in human papillomavirus type 8 E6 transgenic mice and rapid induction by UV-light exposure and wounding. , 2009, The Journal of general virology.

[11] N. Hacohen,et al. A Physical and Regulatory Map of Host-Influenza Interactions Reveals Pathways in H1N1 Infection , 2009, Cell.

[12] D. Livingston,et al. Small DNA tumor viruses: large contributors to biomedical sciences. , 2009, Virology.

[13] P. Bork,et al. A method and server for predicting damaging missense mutations , 2010, Nature Methods.

[14] N. Copeland,et al. Harnessing transposons for cancer gene discovery , 2010, Nature Reviews Cancer.

[15] Derek Y. Chiang,et al. The landscape of somatic copy-number alteration across human cancers , 2010, Nature.

[16] Teri A Manolio,et al. Genomewide association studies and assessment of the risk of disease. , 2010, The New England journal of medicine.

[17] S. Ficarro,et al. Online nanoflow RP-RP-MS reveals dynamics of multicomponent Ku complex in response to DNA damage. , 2010, Journal of proteome research.

[18] David E Hill,et al. High-quality binary interactome mapping. , 2010, Methods in enzymology.

[19] M. Calderwood,et al. Epstein-Barr virus nuclear protein 3C binds to the N-terminal (NTD) and beta trefoil domains (BTD) of RBP/CSL; only the NTD interaction is essential for lymphoblastoid cell growth. , 2011, Virology.

[20] A. Barabasi,et al. Interactome Networks and Human Disease , 2011, Cell.

[21] David E Hill,et al. next-generation sequencing to generate interactome datasets , 2011 .

[22] D. Hanahan,et al. Hallmarks of Cancer: The Next Generation , 2011, Cell.

[23] M. Stratton. Exploring the Genomes of Cancer Cells: Progress and Promise , 2011, Science.

[24] S. Srinivasula,et al. Nrf2-mediated induction of p62 controls Toll-like receptor-4–driven aggresome-like induced structure formation and autophagic degradation , 2011, Proceedings of the National Academy of Sciences.

[25] Mingming Jia,et al. COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer , 2010, Nucleic Acids Res..

[26] A. Capobianco,et al. Notch signalling in solid tumours: a little bit of everything but not all the time , 2011, Nature Reviews Cancer.

[27] T. Suda,et al. Faculty Opinions recommendation of A novel tumour-suppressor function for the Notch pathway in myeloid leukaemia. , 2011 .

[28] A. Iwasaki,et al. Genome–virome interactions: examining the role of common viral infections in complex disease , 2011, Nature Reviews Microbiology.

[29] A. Wallberg,et al. Cutaneous Papillomavirus E6 oncoproteins associate with MAML1 to repress transactivation and NOTCH signaling , 2011, Oncogene.

[30] Deok-Sun Lee,et al. Viral Perturbations of Host Networks Reflect Disease Etiology , 2012, PLoS Comput. Biol..