Human-specific features and developmental dynamics of the brain N-glycome

Comparative “omics” studies have revealed unique aspects of human neurobiology, yet an evolutionary perspective of the brain N-glycome is lacking. Here, we performed multi-regional characterization of rat, macaque, chimpanzee, and human brain N-glycomes using chromatography and mass spectrometry, then integrated these data with complementary glycotranscriptomic data. We found that in primates the brain N-glycome has evolved more rapidly than the underlying transcriptomic framework, providing a mechanism for generating additional diversity. We show that brain N-glycome evolution in hominids has been characterized by an increase in complexity and α(2-6)-linked N-acetylneuraminic acid along with human-specific cell-type expression of key glycogenes. Finally, by comparing the prenatal and adult human brain N-glycome, we identify region-specific neurodevelopmental pathways that lead to distinct spatial N-glycosylation profiles in the mature brain. One-Sentence Summary Evolution of the human brain N-glycome has been marked by an increase in complexity and a shift in sialic acid linkage.

[1]  P. Hof,et al.  Molecular and cellular evolution of the primate dorsolateral prefrontal cortex , 2022, Science.

[2]  G. Lauc,et al.  The dynamic brain N-glycome , 2022, Glycoconjugate Journal.

[3]  Sarah E. Williams,et al.  Mammalian brain glycoproteins exhibit diminished glycan complexity compared to other tissues , 2022, Nature Communications.

[4]  Matthew S. Gentry,et al.  Emerging roles of N-linked glycosylation in brain physiology and disorders , 2021, Trends in Endocrinology & Metabolism.

[5]  W. Huttner,et al.  Metabolic Regulation of Neocortical Expansion in Development and Evolution , 2020, Neuron.

[6]  Kiyoko F. Aoki-Kinoshita,et al.  GlycoPOST realizes FAIR principles for glycomics mass spectrometry data , 2020, Nucleic Acids Res..

[7]  G. Lauc,et al.  Post-natal developmental changes in the composition of the rat neocortical N-glycome. , 2020, Glycobiology.

[8]  M. Webster,et al.  Spatial and temporal diversity of glycome expression in mammalian brain , 2020, Proceedings of the National Academy of Sciences.

[9]  P. Rudd,et al.  Region-specific characterization of N-glycans in striatum and substantia nigra of an adult rodent brain. , 2020, Analytical chemistry.

[10]  Frédérique Lisacek,et al.  Examining and fine-tuning the selection of glycan compositions with GlyConnect Compozitor , 2020, bioRxiv.

[11]  F. Williams,et al.  Heritability of human plasma N-glycome. , 2019, Journal of proteome research.

[12]  Ian T. Fiddes,et al.  Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution , 2018, Cell.

[13]  Daniel J. Miller,et al.  Spatiotemporal transcriptomic divergence across human and macaque brain development , 2018, Science.

[14]  Stephan J Sanders,et al.  Integrative functional genomic analysis of human brain development and neuropsychiatric risks , 2018, Science.

[15]  Christoph Hafemeister,et al.  Comprehensive integration of single cell data , 2018, bioRxiv.

[16]  M. Gerstein,et al.  A Multiregional Proteomic Survey of the Postnatal Human Brain , 2017, Nature Neuroscience.

[17]  N. Šestan,et al.  Evolution of the Human Nervous System Function, Structure, and Development , 2017, Cell.

[18]  I. Gudelj,et al.  HILIC-UPLC Analysis of Brain Tissue N-Glycans. , 2017, Methods in molecular biology.

[19]  Sriram Neelamegham,et al.  Multi-level regulation of cellular glycosylation: from genes to transcript to enzyme to structure. , 2016, Current opinion in structural biology.

[20]  E. Schuman,et al.  Unconventional secretory processing diversifies neuronal ion channel properties , 2016, eLife.

[21]  E. MacLean Unraveling the evolution of uniquely human cognition , 2016, Proceedings of the National Academy of Sciences.

[22]  M. Wuhrer,et al.  Ethyl Esterification for MALDI-MS Analysis of Protein Glycosylation. , 2016, Methods in molecular biology.

[23]  I. Gudelj,et al.  High-throughput glycomics: Optimization of sample preparation , 2015, Biochemistry (Moscow).

[24]  S. Pääbo,et al.  Organization and Evolution of Brain Lipidome Revealed by Large-Scale Analysis of Human, Chimpanzee, Macaque, and Mouse Tissues , 2015, Neuron.

[25]  A. Varki,et al.  Why Is N-Glycolylneuraminic Acid Rare in the Vertebrate Brain? , 2013, Topics in current chemistry.

[26]  K. Ikenaka,et al.  Determination of major sialylated N-glycans and identification of branched sialylated N-glycans that dynamically change their content during development in the mouse cerebral cortex , 2014, Glycoconjugate Journal.

[27]  André M Deelder,et al.  High-throughput profiling of protein N-glycosylation by MALDI-TOF-MS employing linkage-specific sialic acid esterification. , 2014, Analytical chemistry.

[28]  Mingfeng Li,et al.  Temporal Specification and Bilaterality of Human Neocortical Topographic Gene Expression , 2014, Neuron.

[29]  C. Schengrund Roles of carbohydrates in the interaction of pathogens with neural cells. , 2014, Advances in neurobiology.

[30]  P. Hof,et al.  Cerebellar granule cells are generated postnatally in humans , 2014, Brain Structure and Function.

[31]  Cecilia Heyes,et al.  New thinking: the evolution of human cognition , 2012, Philosophical Transactions of the Royal Society B: Biological Sciences.

[32]  T. Preuss Human brain evolution: From gene discovery to phenotype discovery , 2012, Proceedings of the National Academy of Sciences.

[33]  Patrick R Hof,et al.  Human brain evolution writ large and small. , 2012, Progress in brain research.

[34]  J. Kleinman,et al.  Spatiotemporal transcriptome of the human brain , 2011, Nature.

[35]  M. Aebi,et al.  Mechanisms and principles of N-linked protein glycosylation. , 2011, Current opinion in structural biology.

[36]  Kevin N Laland,et al.  The evolution of primate general and cultural intelligence , 2011, Philosophical Transactions of the Royal Society B: Biological Sciences.

[37]  Daniel H. Geschwind,et al.  Human Brain Evolution: Harnessing the Genomics (R)evolution to Link Genes, Cognition, and Behavior , 2010, Neuron.

[38]  C. Sato,et al.  Developmental stage-dependent expression of an alpha2,8-trisialic acid unit on glycoproteins in mouse brain. , 2010, Glycobiology.

[39]  Richard D Cummings,et al.  Symbol nomenclature for glycan representation , 2009, Proteomics.

[40]  David Boltz,et al.  Highly pathogenic H5N1 influenza virus can enter the central nervous system and induce neuroinflammation and neurodegeneration , 2009, Proceedings of the National Academy of Sciences.

[41]  G. Hart,et al.  Evolution of Glycan Diversity -- Essentials of Glycobiology , 2009 .

[42]  A. Varki,et al.  Evolution of Glycan Diversity , 2009 .

[43]  Philippe Besse,et al.  Statistical Applications in Genetics and Molecular Biology A Sparse PLS for Variable Selection when Integrating Omics Data , 2011 .

[44]  William S York,et al.  Regulation of Glycan Structures in Animal Tissues , 2008, Journal of Biological Chemistry.

[45]  Pauline M. Rudd,et al.  GlycoBase and autoGU: tools for HPLC-based glycan analysis , 2008, Bioinform..

[46]  Alessio Ceroni,et al.  GlycoWorkbench: a tool for the computer-assisted annotation of mass spectra of glycans. , 2008, Journal of proteome research.

[47]  U. Rutishauser Polysialic acid in the plasticity of the developing and adult vertebrate nervous system , 2008, Nature Reviews Neuroscience.

[48]  Keiichiro Sakuma,et al.  Developmental changes in the expression of glycogenes and the content of N-glycans in the mouse cerebral cortex. , 2007, Glycobiology.

[49]  Michael Lachmann,et al.  Evolution of primate gene expression , 2006, Nature Reviews Genetics.

[50]  J. Bradbury Molecular Insights into Human Brain Evolution , 2005, PLoS biology.

[51]  Mark C. Field,et al.  Use of large-scale hydrazinolysis in the preparation ofN-linked oligosaccharide libraries: application to brain tissue , 1992, Glycoconjugate Journal.

[52]  A. Varki,et al.  Human-specific Regulation of α2–6-linked Sialic Acids* , 2003, Journal of Biological Chemistry.

[53]  M. Fukuda,et al.  Polysialyltransferases: major players in polysialic acid synthesis on the neural cell adhesion molecule. , 2003, Biochimie.

[54]  Catherine A. Cooper,et al.  GlycoMod – A software tool for determining glycosylation compositions from mass spectrometric data , 2001, Proteomics.

[55]  M. Tomasello Evolution of human cognition , 2001 .

[56]  A. Varki,et al.  Evolutionary considerations in relating oligosaccharide diversity to biological function. , 1999, Glycobiology.

[57]  K. Ikenaka,et al.  Conversion of brain-specific complex type sugar chains by N-acetyl-beta-D-hexosaminidase B. , 1999, Journal of biochemistry.

[58]  H. Rahmann,et al.  Heterogeneous Expression of the Polysialyltransferases ST8Sia II and ST8Sia IV During Postnatal Rat Brain Development , 1998, Journal of neurochemistry.

[59]  R. Dwek,et al.  Sialylated N-glycans in adult rat brain tissue--a widespread distribution of disialylated antennae in complex and hybrid structures. , 1998, European journal of biochemistry.

[60]  J. Pevsner,et al.  The expanding β4-galactosyltransferase gene family: messages from the databanks , 1998 .

[61]  J. Nakayama,et al.  Developmental regulation of polysialic acid synthesis in mouse directed by two polysialyltransferases, PST and STX. , 1998, Glycobiology.

[62]  R. Dwek,et al.  Neutral N-glycans in adult rat brain tissue--complete characterisation reveals fucosylated hybrid and complex structures. , 1998, European journal of biochemistry.

[63]  R. Dwek,et al.  A rapid high-resolution high-performance liquid chromatographic method for separating glycan mixtures and analyzing oligosaccharide profiles. , 1996, Analytical biochemistry.

[64]  J. Majercak,et al.  Rat Brain Contains High Levels of Mannose-6-phosphorylated Glycoproteins Including Lysosomal Enzymes and Palmitoyl-Protein Thioesterase, an Enzyme Implicated in Infantile Neuronal Lipofuscinosis* , 1996, The Journal of Biological Chemistry.

[65]  M. Nimtz,et al.  ‘Brain‐type’ N‐glycosylation of asialo‐transferrin from human cerebrospinal fluid , 1995, FEBS letters.

[66]  M. Nimtz,et al.  Carbohydrate Structures of β‐Trace Protein from Human Cerebrospinal Fluid: Evidence for “Brain‐Type”N‐Glycosylation , 1994, Journal of neurochemistry.

[67]  J. Gurd,et al.  Developmental Changes in the Oligosaccharide Composition of Synaptic Junctional Glycoproteins , 1983, Journal of neurochemistry.

[68]  R. U. Margolis,et al.  Developmental changes in brain glycoproteins , 1976, Brain Research.

[69]  J. Finne,et al.  Neutral and acidic glycopeptides in adult and developing rat brain. , 1974, Biochimica et biophysica acta.

[70]  E. Brunngraber,et al.  FRACTIONATTON OF BRAIN MACROMOLECULES—II. ISOLATION OF PROTEIN‐LINKED SIALOMUCOPOLY‐SACCHARIDES FROM SUBCELLULAR, PARTICULATE FRACTIONS FROM RAT BRAIN , 1964 .