Turing instability in reaction-subdiffusion systems.

We determine the conditions for the occurrence of Turing instabilities in activator-inhibitor systems, where one component undergoes subdiffusion and the other normal diffusion. If the subdiffusing species has a nonlinear death rate, then coupling between the nonlinear kinetics and the memory effects of the non-Markovian transport process advances the Turing instability if the inhibitor subdiffuses and delays the Turing instability if the activator subdiffuses. We apply the results of our analysis to the Schnakenberg model, the Gray-Scott model, the Oregonator model of the Belousov-Zhabotinsky reaction, and the Lengyel-Epstein model of the chlorine dioxide-iodine-malonic acid reaction.

[1]  J. Ross,et al.  Systematic derivation of reaction-diffusion equations with distributed delays and relations to fractional reaction-diffusion equations and hyperbolic transport equations: application to the theory of Neolithic transition. , 2002, Physical review. E, Statistical, nonlinear, and soft matter physics.

[2]  J. Klafter,et al.  The random walk's guide to anomalous diffusion: a fractional dynamics approach , 2000 .

[3]  M. Saxton,et al.  Single-particle tracking: models of directed transport. , 1994, Biophysical journal.

[4]  Irving R. Epstein,et al.  Experimental and modeling study of oscillations in the chlorine dioxide-iodine-malonic acid reaction , 1990 .

[5]  Paul Manneville,et al.  Dissipative Structures and Weak Turbulence , 1995 .

[6]  Brian Berkowitz,et al.  Morphogen gradient formation in a complex environment: an anomalous diffusion model. , 2005, Physical review. E, Statistical, nonlinear, and soft matter physics.

[7]  W. Skaggs,et al.  Chemical vortex dynamics in the Belousov-Zhabotinskii reaction and in the two-variable oregonator model , 1989 .

[8]  Matthias Weiss,et al.  Stabilizing Turing patterns with subdiffusion in systems with low particle numbers. , 2003, Physical review. E, Statistical, nonlinear, and soft matter physics.

[9]  Alexander A. Nepomnyashchy,et al.  Turing instability in sub-diffusive reaction–diffusion systems , 2007 .

[10]  P. Gaspard,et al.  Chaotic and fractal properties of deterministic diffusion-reaction processes. , 1998, Chaos.

[11]  M. Cross,et al.  Pattern formation outside of equilibrium , 1993 .

[12]  L. Mátyás,et al.  Entropy production in diffusion-reaction systems: the reactive random Lorentz gas. , 2004, Physical review. E, Statistical, nonlinear, and soft matter physics.

[13]  W. Webb,et al.  Automated detection and tracking of individual and clustered cell surface low density lipoprotein receptor molecules. , 1994, Biophysical journal.

[14]  M. Saxton Anomalous diffusion due to binding: a Monte Carlo study. , 1996, Biophysical journal.

[15]  J. Tyson,et al.  Target patterns in a realistic model of the Belousov–Zhabotinskii reaction , 1980 .

[16]  Measuring subdiffusion parameters. , 2003, Physical review. E, Statistical, nonlinear, and soft matter physics.

[17]  Mansour,et al.  Reaction-diffusion master equation: A comparison with microscopic simulations. , 1996, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[18]  Bruce Ian Henry,et al.  Turing pattern formation with fractional diffusion and fractional reactions , 2007 .

[19]  A. Turing The chemical basis of morphogenesis , 1952, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences.

[20]  I M Sokolov,et al.  Reaction-subdiffusion equations. , 2006, Physical review. E, Statistical, nonlinear, and soft matter physics.

[21]  J. Schnakenberg,et al.  Simple chemical reaction systems with limit cycle behaviour. , 1979, Journal of theoretical biology.

[22]  Stephen K. Scott,et al.  Autocatalytic reactions in the isothermal, continuous stirred tank reactor: Isolas and other forms of multistability , 1983 .

[23]  I. Epstein,et al.  Modeling of Turing Structures in the Chlorite—Iodide—Malonic Acid—Starch Reaction System , 1991, Science.

[24]  Werner Horsthemke,et al.  Kinetic equations for reaction-subdiffusion systems: derivation and stability analysis. , 2006, Physical review. E, Statistical, nonlinear, and soft matter physics.

[25]  Coloring a Lorentz gas , 1998 .

[26]  S. Wearne,et al.  Anomalous subdiffusion with multispecies linear reaction dynamics. , 2008, Physical review. E, Statistical, nonlinear, and soft matter physics.

[27]  S L Wearne,et al.  Anomalous diffusion with linear reaction dynamics: from continuous time random walks to fractional reaction-diffusion equations. , 2006, Physical review. E, Statistical, nonlinear, and soft matter physics.

[28]  I. Sokolov,et al.  Mesoscopic description of reactions for anomalous diffusion: a case study , 2006, cond-mat/0608117.

[29]  I M Sokolov,et al.  Reaction-subdiffusion equations for the A<=>B reaction. , 2008, Physical review. E, Statistical, nonlinear, and soft matter physics.