Tools for Resolving Functional Activity and Connectivity within Intact Neural Circuits

[1]  Raag D. Airan,et al.  Optogenetic interrogation of neural circuits: technology for probing mammalian brain structures , 2010, Nature Protocols.

[2]  Lief E. Fenno,et al.  Principles for applying optogenetic tools derived from direct comparative analysis of microbial opsins , 2011, Nature Methods.

[3]  K. Svoboda,et al.  Neural Activity in Barrel Cortex Underlying Vibrissa-Based Object Localization in Mice , 2010, Neuron.

[4]  Philipp J. Keller,et al.  Whole-brain functional imaging at cellular resolution using light-sheet microscopy , 2013, Nature Methods.

[5]  K. Deisseroth,et al.  Optogenetic stimulation of a hippocampal engram activates fear memory recall , 2012, Nature.

[6]  A. Hodgkin,et al.  Depolarization and calcium entry in squid giant axons , 1971, The Journal of physiology.

[7]  R. Samulski,et al.  Adeno-associated virus vectors for gene therapy: more pros than cons? , 2000, Molecular medicine today.

[8]  Mark Mayford,et al.  Genetic Control of Active Neural Circuits , 2009, Front. Mol. Neurosci..

[9]  E. Callaway,et al.  Multiple Circuits Relaying Primate Parallel Visual Pathways to the Middle Temporal Area , 2006, The Journal of Neuroscience.

[10]  B. McNaughton,et al.  Tetrodes markedly improve the reliability and yield of multiple single-unit isolation from multi-unit recordings in cat striate cortex , 1995, Journal of Neuroscience Methods.

[11]  Anne E Carpenter,et al.  Neuron-type specific signals for reward and punishment in the ventral tegmental area , 2011, Nature.

[12]  A. Mehta,et al.  In vivo mammalian brain imaging using one- and two-photon fluorescence microendoscopy. , 2004, Journal of neurophysiology.

[13]  Yiming Li,et al.  Transformation of odor selectivity from projection neurons to single mushroom body neurons mapped with dual-color calcium imaging , 2013, Proceedings of the National Academy of Sciences.

[14]  David C Rowland,et al.  Generation of a Synthetic Memory Trace , 2012, Science.

[15]  Susana Q. Lima,et al.  PINP: A New Method of Tagging Neuronal Populations for Identification during In Vivo Electrophysiological Recording , 2009, PloS one.

[16]  B. Roth,et al.  Remote Control of Neuronal Signaling , 2011, Pharmacological Reviews.

[17]  P. Teitelbaum,et al.  Hypothalamic Control of Feeding and Self-Stimulation , 1962, Science.

[18]  Tianyi Mao,et al.  A Role for Myosin VI in the Localization of Axonal Proteins , 2011, PLoS biology.

[19]  Anatol C. Kreitzer,et al.  Differential Innervation of Direct- and Indirect-Pathway Striatal Projection Neurons , 2013, Neuron.

[20]  L. Heimer,et al.  Piecing together the puzzle of basal forebrain anatomy. , 1991, Advances in experimental medicine and biology.

[21]  Alice M Stamatakis,et al.  The Inhibitory Circuit Architecture of the Lateral Hypothalamus Orchestrates Feeding , 2013, Science.

[22]  D. Tank,et al.  Cellular Resolution Functional Imaging in Behaving Rats Using Voluntary Head Restraint , 2013, Neuron.

[23]  K. Deisseroth,et al.  Optogenetic investigation of neural circuits underlying brain disease in animal models , 2012, Nature Reviews Neuroscience.

[24]  Yei Hwan Jung,et al.  Injectable, Cellular-Scale Optoelectronics with Applications for Wireless Optogenetics , 2013, Science.

[25]  Alice M Stamatakis,et al.  Excitatory transmission from the amygdala to nucleus accumbens facilitates reward seeking. , 2011, Nature.

[26]  J. Guzowski,et al.  Using immediate-early genes to map hippocampal subregional functions. , 2007, Learning & memory.

[27]  Jasper Akerboom,et al.  Optimization of a GCaMP Calcium Indicator for Neural Activity Imaging , 2012, The Journal of Neuroscience.

[28]  J. Simon Wiegert,et al.  Multiple dynamic representations in the motor cortex during sensorimotor learning , 2012, Nature.

[29]  S. Phipps,et al.  Anterograde neuronal circuit tracing using a genetically modified herpes simplex virus expressing EGFP , 2012, Journal of Neuroscience Methods.

[30]  Steven S. Vogel,et al.  Concurrent Activation of Striatal Direct and Indirect Pathways During Action Initiation , 2013, Nature.

[31]  R. Broadwell,et al.  Endocytic and exocytic pathways of the neuronal secretory process and trans synaptic transfer of wheat germ agglutinin‐horseradish peroxidase in vivo , 1985, The Journal of comparative neurology.

[32]  James L Olds,et al.  Identical "Feeding" and "Rewarding" Systems in the Lateral Hypothalamus of Rats , 1962, Science.

[33]  Ilana B. Witten,et al.  Recombinase-Driver Rat Lines: Tools, Techniques, and Optogenetic Application to Dopamine-Mediated Reinforcement , 2011, Neuron.

[34]  O. Garaschuk,et al.  Cortical calcium waves in resting newborn mice , 2005, Nature Neuroscience.

[35]  H. Akil,et al.  Controlling signaling with a specifically designed Gi-coupled receptor. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[36]  Lucien T. Thompson,et al.  Long-term stability of the place-field activity of single units recorded from the dorsal hippocampus of freely behaving rats , 1990, Brain Research.

[37]  Atsushi Miyawaki,et al.  Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain , 2011, Nature Neuroscience.

[38]  Edward S Boyden,et al.  Three-dimensional multiwaveguide probe array for light delivery to distributed brain circuits. , 2012, Optics letters.

[39]  James H. Marshel,et al.  New Rabies Virus Variants for Monitoring and Manipulating Activity and Gene Expression in Defined Neural Circuits , 2011, Neuron.

[40]  Philipp J. Keller,et al.  Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy , 2008, Science.

[41]  Karl Deisseroth,et al.  Optogenetics in Neural Systems , 2011, Neuron.

[42]  J. D. Coulter,et al.  Transneuronal transport of lectins , 1985, Brain Research.

[43]  Karel Svoboda,et al.  The Functional Properties of Barrel Cortex Neurons Projecting to the Primary Motor Cortex , 2010, The Journal of Neuroscience.

[44]  Jessica A. Cardin,et al.  Driving fast-spiking cells induces gamma rhythm and controls sensory responses , 2009, Nature.

[45]  M. Nicolelis,et al.  Remote Control of Neuronal Activity in Transgenic Mice Expressing Evolved G Protein-Coupled Receptors , 2009, Neuron.

[46]  Jasper Akerboom,et al.  Crystal Structures of the GCaMP Calcium Sensor Reveal the Mechanism of Fluorescence Signal Change and Aid Rational Design , 2009, Journal of Biological Chemistry.

[47]  Dae-Shik Kim,et al.  Global and local fMRI signals driven by neurons defined optogenetically by type and wiring , 2010, Nature.

[48]  J. Schlag,et al.  Determination of antidromic excitation by the collision test: Problems of interpretation , 1976, Brain Research.

[49]  B. Lundh,et al.  Spread of vesicular stomatitis virus along the visual pathways after retinal infection in the mouse , 2004, Acta Neuropathologica.

[50]  Stefan R. Pulver,et al.  Ultra-sensitive fluorescent proteins for imaging neuronal activity , 2013, Nature.

[51]  James L Olds,et al.  Positive reinforcement produced by electrical stimulation of septal area and other regions of rat brain. , 1954, Journal of comparative and physiological psychology.

[52]  Aaron S. Andalman,et al.  Structural and molecular interrogation of intact biological systems , 2013, Nature.

[53]  K. Svoboda,et al.  Sparse optical microstimulation in barrel cortex drives learned behaviour in freely moving mice , 2008, Nature.

[54]  Murtaza Z Mogri,et al.  Optical Deconstruction of Parkinsonian Neural Circuitry , 2009, Science.

[55]  Jonathan S. Dordick,et al.  Radio-Wave Heating of Iron Oxide Nanoparticles Can Regulate Plasma Glucose in Mice , 2012, Science.

[56]  Sreekanth H. Chalasani,et al.  Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators , 2009, Nature Methods.

[57]  M. Moser,et al.  Optogenetic Dissection of Entorhinal-Hippocampal Functional Connectivity , 2013, Science.

[58]  E. Callaway.  Transneuronal circuit tracing with neurotropic viruses , 2008, Current Opinion in Neurobiology.

[59]  B. Hoebel,et al.  "Copulation-Reward Site" in the Posterior Hypothalamus , 1966, Science.

[60]  Lin Tian,et al.  Functional imaging of hippocampal place cells at cellular resolution during virtual navigation , 2010, Nature Neuroscience.

[61]  K. Svoboda,et al.  Imaging Calcium Concentration Dynamics in Small Neuronal Compartments , 2004, Science's STKE.

[62]  Attila Losonczy,et al.  Septo-hippocampal GABAergic signaling across multiple modalities in awake mice , 2013, Nature Neuroscience.

[63]  Karl Deisseroth,et al.  A Unique Population of Ventral Tegmental Area Neurons Inhibits the Lateral Habenula to Promote Reward , 2013, Neuron.

[64]  Takeshi Imai,et al.  SeeDB: a simple and morphology-preserving optical clearing agent for neuronal circuit reconstruction , 2013, Nature Neuroscience.

[65]  Alice M Stamatakis,et al.  Distinct extended amygdala circuits for divergent motivational states , 2013, Nature.

[66]  Y. Yoshihara.  Visualizing selective neural pathways with WGA transgene: combination of neuroanatomy with gene technology , 2002, Neuroscience Research.

[67]  S. Sternson,et al.  A FLEX Switch Targets Channelrhodopsin-2 to Multiple Cell Types for Imaging and Long-Range Circuit Mapping , 2008, The Journal of Neuroscience.

[68]  Lacey J. Kitch,et al.  Long-term dynamics of CA1 hippocampal place codes , 2013, Nature Neuroscience.

[69]  F. Helmchen,et al.  Miniaturized two-photon microscope based on a flexible coherent fiber bundle and a gradient-index lens objective. , 2004, Optics letters.

[70]  Ian R. Wickersham,et al.  Retrograde neuronal tracing with a deletion-mutant rabies virus , 2007, Nature Methods.

[71]  B. Hangya,et al.  Distinct behavioural and network correlates of two interneuron types in prefrontal cortex , 2013, Nature.

[72]  K. Deisseroth,et al.  Parvalbumin neurons and gamma rhythms enhance cortical circuit performance , 2009, Nature.

[73]  J. Betley,et al.  Deconstruction of a neural circuit for hunger , 2012, Nature.

[74]  D. Kleinfeld,et al.  Correlations of Neuronal and Microvascular Densities in Murine Cortex Revealed by Direct Counting and Colocalization of Nuclei and Vessels , 2009, The Journal of Neuroscience.

[75]  Caroline A. Johnson,et al.  Novel recombinant adeno-associated viruses for Cre activated and inactivated transgene expression in neurons , 2012, Front. Neural Circuits.

[76]  D. Edell,et al.  Factors influencing the biocompatibility of insertable silicon microshafts in cerebral cortex , 1992, IEEE Transactions on Biomedical Engineering.

[77]  Karel Svoboda,et al.  Learning-related fine-scale specificity imaged in motor cortex circuits of behaving mice , 2010, Nature.

[78]  Stefan R. Pulver,et al.  Genetically encoded calcium indicators for multi-color neural activity imaging and combination with optogenetics , 2013, Front. Mol. Neurosci..

[79]  Jaime Grutzendler,et al.  Thinned-skull cranial window technique for long-term imaging of the cortex in live mice , 2010, Nature Protocols.

[80]  D. Paré,et al.  Timing of impulses from the central amygdala and bed nucleus of the stria terminalis to the brain stem. , 2008, Journal of neurophysiology.

[81]  Karl Deisseroth,et al.  Optetrode: a multichannel readout for optogenetic control in freely moving mice , 2011, Nature Neuroscience.

[82]  B. Roth,et al.  Pharmacogenetic Modulation of Orexin Neurons Alters Sleep/Wakefulness States in Mice , 2011, Neuroscience Research.

[83]  K. Deisseroth,et al.  Molecular and Cellular Approaches for Diversifying and Extending Optogenetics , 2010, Cell.

[84]  R. Norgren,et al.  Herpes simplex virus as a transneuronal tracer , 1998, Neuroscience & Biobehavioral Reviews.

[85]  Jessica A. Cardin,et al.  Targeted optogenetic stimulation and recording of neurons in vivo using cell-type-specific expression of Channelrhodopsin-2 , 2010, Nature Protocols.

[86]  Jessica A. Cardin,et al.  Dissecting local circuits in vivo: Integrated optogenetic and electrophysiology approaches for exploring inhibitory regulation of cortical activity , 2012, Journal of Physiology-Paris.

[87]  H. Adesnik,et al.  Lateral competition for cortical space by layer-specific horizontal circuits , 2010, Nature.

[88]  K. Deisseroth,et al.  Phasic Firing in Dopaminergic Neurons Is Sufficient for Behavioral Conditioning , 2009, Science.

[89]  Gregory A. Smith,et al.  Retrograde Axon Transport of Herpes Simplex Virus and Pseudorabies Virus: a Live-Cell Comparative Analysis , 2009, Journal of Virology.

[90]  B. Roth,et al.  Evolving the lock to fit the key to create a family of G protein-coupled receptors potently activated by an inert ligand , 2007, Proceedings of the National Academy of Sciences.

[91]  S. Tonegawa,et al.  Creating a False Memory in the Hippocampus , 2013, Science.

[92]  Sachie K. Ogawa,et al.  Whole-Brain Mapping of Direct Inputs to Midbrain Dopamine Neurons , 2012, Neuron.

[93]  David C. Martin,et al.  In vivo studies of polypyrrole/peptide coated neural probes. , 2003, Biomaterials.

[94]  Baker Pf,et al.  Depolarization and calcium entry in squid giant axons. , 1971 .

[95]  D. Szarowski,et al.  Cerebral Astrocyte Response to Micromachined Silicon Implants , 1999, Experimental Neurology.

[96]  B. Roth,et al.  Rapid, reversible activation of AgRP neurons drives feeding behavior in mice. , 2011, The Journal of clinical investigation.

[97]  P. Strick,et al.  Rabies as a transneuronal tracer of circuits in the central nervous system , 2000, Journal of Neuroscience Methods.

[98]  Michael A. Henninger,et al.  High-Performance Genetically Targetable Optical Neural Silencing via Light-Driven Proton Pumps , 2010 .

[99]  Anatol C. Kreitzer,et al.  Regulation of parkinsonian motor behaviours by optogenetic control of basal ganglia circuitry , 2010, Nature.

[100]  K. Obata,et al.  Preferential labeling of inhibitory and excitatory cortical neurons by endogenous tropism of adeno-associated virus and lentivirus vectors , 2009, Neuroscience.

[101]  Lief E. Fenno,et al.  Amygdala circuitry mediating reversible and bidirectional control of anxiety , 2011, Nature.