Effects of Site-Directed Mutagenesis of Cysteine on the Structure of Sip Proteins

Bacillus thuringiensis, a gram-positive bacteria, has three insecticidal proteins: Vip (vegetative insecticidal protein), Cry (crystal), and Sip (secreted insecticidal protein). Of the three, Sip proteins have insecticidal activity against larvae of Coleoptera. However, the Sip1Aa protein has little solubility in the supernatant because of inclusion bodies. This makes it more difficult to study, and thus research on Sip proteins is limited, which hinders the study of their mechanistic functions and insecticidal mechanisms. This highlights the importance of further investigation of the Sip1Aa protein. Disulfide bonds play an important role in the stability and function of proteins. Here, we successfully constructed mutant proteins with high insecticidal activity. The tertiary structure of the Sip1Aa protein was analyzed with homologous modeling and bioinformatics to predict the conserved domain of the protein. Cysteine was used to replace amino acids via site-directed mutagenesis. We successfully constructed Sip149-251, Sip153-248, Sip158-243, and Sip178-314 mutant proteins with higher solubility than Sip1Aa. Sip153-248 and Sip158-243 were the most stable compared to Sip1Aa, followed by Sip149-251 and Sip178-314. The insecticidal activity of Sip153-248 (Sip158-243) was 2.76 (2.26) times higher than that of Sip1Aa. The insecticidal activity of Sip149-251 and Sip178-314 did not differ significantly from that of Sip1Aa. Basic structural properties, physicochemical properties, and the spatial structure of the mutation site of Sip1Aa and the mutant proteins were analyzed. These results provide a molecular basis for using Sip1Aa to control Coleopteran insects and contribute to the study of the Sip1Aa insecticidal mechanism.

[1]  Mingyu He,et al.  Effect of cavitation jets on the physicochemical properties and structural characteristics of the okara protein. , 2021, Journal of food science.

[2]  D. Gupta,et al.  The structural, functional, and dynamic effect of Tau tubulin kinase1 upon a mutation: A neuro‐degenerative hotspot , 2021, Journal of cellular biochemistry.

[3]  K. Tsumoto,et al.  Anion solvation enhanced by positive supercharging mutations preserves thermal stability of an antibody in a wide pH range. , 2021, Biochemical and biophysical research communications.

[4]  Eliza M. Warszawik,et al.  Mechanochemical bond scission for the activation of drugs , 2021, Nature Chemistry.

[5]  Samiksha,et al.  Exploration of insecticidal potential of Cry protein purified from Bacillus thuringiensis VIID1. , 2021, International journal of biological macromolecules.

[6]  Jie Gao,et al.  Effects of conserved Arg20, Glu74 and Asp77 on the structure and function of a tau class glutathione S-transferase in rice , 2021, Plant Molecular Biology.

[7]  D. Moi,et al.  Bioactivity of Bacillus thuringiensis (Bacillales: Bacillaceae) on Diatraea saccharalis (Lepidoptera: Crambidae) eggs. , 2020, Pest management science.

[8]  D. Obenchain,et al.  The Characteristics of Disulfide-Centered Hydrogen Bonds. , 2020, Angewandte Chemie.

[9]  Jing Wang,et al.  In silico Structure–Based Investigation of Key Residues of Insecticidal Activity of Sip1Aa Protein , 2020, Frontiers in Microbiology.

[10]  Liu Cuicui,et al.  Effect of disulphide bonds and sulphhydryl concentrations on properties of wheat flour , 2020 .

[11]  Fucheng Zhu,et al.  Improvement in organic solvent resistance and activity of metalloprotease by directed evolution. , 2019, Journal of biotechnology.

[12]  Prasanta S. Bandyopadhyay,et al.  Non-covalent interactions between epinephrine and nitroaromatic compounds: A DFT study. , 2019, Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy.

[13]  F. Song,et al.  Bacillus thuringiensis Vip1 Functions as a Receptor of Vip2 Toxin for Binary Insecticidal Activity against Holotrichia parallela , 2019, Toxins.

[14]  Yunjun Sun,et al.  The conserved cysteine residues in Bacillus thuringiensis Cry1Ac protoxin are not essential for the bipyramidal crystal formation. , 2019, Journal of invertebrate pathology.

[15]  Yan-yan Chu,et al.  Role of the disulfide bond on the structure and activity of μ-conotoxin PIIIA in the inhibition of NaV1.4 , 2019, RSC advances.

[16]  S. Tounsi,et al.  A novel Vip3Aa16-Cry1Ac chimera toxin: Enhancement of toxicity against Ephestia kuehniella, structural study and molecular docking. , 2018, International journal of biological macromolecules.

[17]  Rongmei Liu,et al.  Sip1Ab gene from a native Bacillus thuringiensis strain QZL38 and its insecticidal activity against Colaphellus bowringi Baly , 2018 .

[18]  N. Lingg,et al.  Microheterogeneity of Recombinant Antibodies: Analytics and Functional Impact , 2018, Biotechnology journal.

[19]  E. Weerapana,et al.  From structure to redox: The diverse functional roles of disulfides and implications in disease , 2017, Proteomics.

[20]  C. King,et al.  Assessment of Pfs25 expressed from multiple soluble expression platforms for use as transmission-blocking vaccine candidates , 2016, Malaria Journal.

[21]  Michael J E Sternberg,et al.  The Phyre2 web portal for protein modeling, prediction and analysis , 2015, Nature Protocols.

[22]  D. H. Pinheiro,et al.  Requirement of Simultaneous Assessment of Crystal- and Supernatant-Related Entomotoxic Activities of Bacillus thuringiensis Strains for Biocontrol-Product Development , 2014, Toxins.

[23]  Marco Biasini,et al.  SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information , 2014, Nucleic Acids Res..

[24]  Ying-Lan Li,et al.  Deciphering structural and functional roles of disulfide bonds in decorsin , 2013, Science China Chemistry.

[25]  K. Fiedoruk,et al.  Complete Genome Sequence of Bacillus thuringiensis subsp. thuringiensis Strain IS5056, an Isolate Highly Toxic to Trichoplusia ni , 2013, Genome Announcements.

[26]  C. Tahimic,et al.  Anabolic effects of IGF-1 signaling on the skeleton , 2013, Front. Endocrin..

[27]  M. K. Maiti,et al.  Molecular characterization of a novel vegetative insecticidal protein from Bacillus thuringiensis effective against sap-sucking insect pest. , 2011, Journal of microbiology and biotechnology.

[28]  Liao Zhi-qiong Cloning and bioinformatics analysis of ghrelin gene in Carassius auratus , 2011 .

[29]  Ben Raymond,et al.  Environmental Factors Determining the Epidemiology and Population Genetic Structure of the Bacillus cereus Group in the Field , 2010, PLoS pathogens.

[30]  V. Hivrale,et al.  Partial purification and characterization of Helicoverpa armigera (Lepidoptera: Noctuidae) active aminopeptidase secreted in midgut. , 2010, Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology.

[31]  F. Avilés,et al.  Designing out disulfide bonds of leech carboxypeptidase inhibitor: implications for its folding, stability and function. , 2009, Journal of molecular biology.

[32]  Shuangyan Han,et al.  Enhancing thermostability of a Rhizomucor miehei lipase by engineering a disulfide bond and displaying on the yeast cell surface , 2009, Applied Microbiology and Biotechnology.

[33]  Yang Yi-zhong Effects of Temperature Stress on Bt Insecticidal Protein Expression in Bt Transgenic Cotton Leaves and Death Rate of Cotton Bollworm , 2009 .

[34]  I. Swiecicka,et al.  Novel Isolate of Bacillus thuringiensis subsp. thuringiensis That Produces a Quasicuboidal Crystal of Cry1Ab21 Toxic to Larvae of Trichoplusia ni , 2007, Applied and Environmental Microbiology.

[35]  R. Bhatnagar,et al.  Purification and characterization of aminopeptidase N from Spodoptera litura expressed in Sf21 insect cells. , 2007, Protein expression and purification.

[36]  K. Inouye,et al.  Efficient solubilization, activation, and purification of recombinant Cry45Aa of Bacillus thuringiensis expressed as inclusion bodies in Escherichia coli. , 2006, Protein expression and purification.

[37]  C. Tsai,et al.  Purification and Characterization , 2006 .

[38]  G. Heck,et al.  Discovery and characterization of Sip1A: a novel secreted protein from Bacillus thuringiensis with activity against coleopteran larvae , 2006, Applied Microbiology and Biotechnology.

[39]  B. Wingerd,et al.  Bt: mode of action and use. , 2003, Archives of insect biochemistry and physiology.

[40]  P. Luxananil,et al.  Efficient Expression of the Mosquito Larvicidal Binary Toxin Gene from Bacillus sphaericus in Escherichia coli , 2003, Current Microbiology.

[41]  Alan A. Dombkowski,et al.  Disulfide by DesignTM: a computational method for the rational design of disulfide bonds in proteins , 2003, Bioinform..

[42]  Richard T. Roush,et al.  Insect Resistance to Transgenic Bt Crops: Lessons from the Laboratory and Field , 2003, Journal of economic entomology.

[43]  D. Beveridge,et al.  Exploratory studies of ab initio protein structure prediction: Multiple copy simulated annealing, AMBER energy functions, and a generalized born/solvent accessibility solvation model , 2002, Proteins.

[44]  K. Nishimura,et al.  Occurrence of Bacillus thuringiensis in Fresh Waters of Japan , 2000, Current Microbiology.

[45]  P. Vail,et al.  Prevalence and transovum transmission of Bacillus thuringiensis berliner in a navel orangeworm colony. , 2000, Journal of Invertebrate Pathology.

[46]  J. Binley,et al.  A Recombinant Human Immunodeficiency Virus Type 1 Envelope Glycoprotein Complex Stabilized by an Intermolecular Disulfide Bond between the gp120 and gp41 Subunits Is an Antigenic Mimic of the Trimeric Virion-Associated Structure , 2000, Journal of Virology.

[47]  H Meiners,et al.  [Effects of temperature]. , 1973, ZWR.