Methodological Aspects of Multiplex Terminal Restriction Fragment Length Polymorphism-Technique to Describe the Genetic Diversity of Soil Bacteria, Archaea and Fungi
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[1] R. Conrad,et al. Acetoclastic and hydrogenotrophic methane production and methanogenic populations in an acidic West-Siberian peat bog. , 2004, Environmental microbiology.
[2] P. Gillevet,et al. Analyzing salt-marsh fungal diversity: comparing ARISA fingerprinting with clone sequencing and pyrosequencing , 2009 .
[3] L. Kerkhof,et al. Phylogeography of Sulfate-Reducing Bacteria among Disturbed Sediments, Disclosed by Analysis of the Dissimilatory Sulfite Reductase Genes (dsrAB) , 2005, Applied and Environmental Microbiology.
[4] Norbert Sauberer,et al. Surrogate taxa for biodiversity in agricultural landscapes of eastern Austria , 2004 .
[5] K. Lindström,et al. Novel group within the kingdom Crenarchaeota from boreal forest soil , 1997, Applied and environmental microbiology.
[6] P. Balvanera,et al. Quantifying the evidence for biodiversity effects on ecosystem functioning and services. , 2006, Ecology letters.
[7] K. Jürgens,et al. Interaction of Nutrient Limitation and Protozoan Grazing Determines the Phenotypic Structure of a Bacterial Community , 2003, Microbial Ecology.
[8] T. Lueders,et al. Evaluation of PCR Amplification Bias by Terminal Restriction Fragment Length Polymorphism Analysis of Small-Subunit rRNA and mcrA Genes by Using Defined Template Mixtures of Methanogenic Pure Cultures and Soil DNA Extracts , 2003, Applied and Environmental Microbiology.
[9] W. Wade,et al. Design and Evaluation of Useful Bacterium-Specific PCR Primers That Amplify Genes Coding for Bacterial 16S rRNA , 1998, Applied and Environmental Microbiology.
[10] Hans H. Cheng,et al. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA , 1997, Applied and environmental microbiology.
[11] O. Mathieu,et al. High Microbial Diversity Promotes Soil Ecosystem Functioning , 2018, Applied and Environmental Microbiology.
[12] D. Barker,et al. The influence of fluorescent dye structure on the electrophoretic mobility of end-labeled DNA. , 1998, Nucleic acids research.
[13] P. Schenk,et al. Culture-independent molecular tools for soil and rhizosphere microbiology , 2013 .
[14] Diversity of soil Archaea in boreal forest before, and after clear-cutting and prescribed burning , 1999 .
[15] N. C. Gomes,et al. Assessment of Variation in Bacterial Composition among Microhabitats in a Mangrove Environment Using DGGE Fingerprints and Barcoded Pyrosequencing , 2012, PloS one.
[16] L. Karliński,et al. Soil Microbial Biomass and Community Composition Relates to Poplar Genotypes and Environmental Conditions , 2020, Forests.
[17] A. Gillison,et al. Assessing biodiversity at landscape level in northern Thailand and Sumatra (Indonesia): the importance of environmental context , 2004 .
[18] Zhenyu Zhu,et al. The Fidelity Index provides a systematic quantitation of star activity of DNA restriction endonucleases , 2008, Nucleic acids research.
[19] P. Janssen,et al. PCR-generated artefact from 16S rRNA gene-specific primers. , 2005, FEMS microbiology letters.
[20] B. Dam,et al. Isolation of high molecular weight and humic acid-free metagenomic DNA from lignocellulose-rich samples compatible for direct fosmid cloning , 2018, Applied Microbiology and Biotechnology.
[21] J. Foster,et al. MiCA: A Web-Based Tool for the Analysis of Microbial Communities Based on Terminal-Restriction Fragment Length Polymorphisms of 16S and 18S rRNA Genes , 2007, Microbial Ecology.
[22] J. Swings,et al. Comparison of 16S ribosomal DNA sequences of all Xanthomonas species. , 1997, International Journal of Systematic Bacteriology.
[23] S. Tsuneda,et al. Long-term monitoring of the succession of a microbial community in activated sludge from a circulation flush toilet as a closed system. , 2006, FEMS microbiology ecology.
[24] R. Conrad,et al. Differential Effects of Nitrogenous Fertilizers on Methane-Consuming Microbes in Rice Field and Forest Soils , 2006, Applied and Environmental Microbiology.
[25] J. Martiny,et al. Testing the functional significance of microbial composition in natural communities. , 2007, FEMS microbiology ecology.
[26] I. Anderson,et al. Fine-scale distribution of pine ectomycorrhizas and their extramatrical mycelium. , 2006, The New phytologist.
[27] Mark V Brown,et al. Community fingerprinting in a sequencing world. , 2014, FEMS microbiology ecology.
[28] G. Berg,et al. Pros and Cons of Ion-Torrent Next Generation Sequencing versus Terminal Restriction Fragment Length Polymorphism T-RFLP for Studying the Rumen Bacterial Community , 2014, PloS one.
[29] M. V. D. van der Heijden,et al. The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems. , 2008, Ecology letters.
[30] M. Moran,et al. Analysis of Internal Transcribed Spacer (ITS) Regions of rRNA Genes in Fungal Communities in a Southeastern U.S. Salt Marsh , 2002, Microbial Ecology.
[31] Jerzy Lipiec,et al. Community Level Physiological Profiles (CLPP), Characterization and Microbial Activity of Soil Amended with Dairy Sewage Sludge , 2012, Sensors.
[32] Jordan A. Fish,et al. FunGene: the functional gene pipeline and repository , 2013, Front. Microbiol..
[33] H. Ni,et al. Land use change effects on diversity of soil bacterial, Acidobacterial and fungal communities in wetlands of the Sanjiang Plain, northeastern China , 2019, Scientific Reports.
[34] T. Junier,et al. TRiFLe, a Program for In Silico Terminal Restriction Fragment Length Polymorphism Analysis with User-Defined Sequence Sets , 2008, Applied and Environmental Microbiology.
[35] B. Singh,et al. Multiplex T-RFLP Allows for Increased Target Number and Specificity: Detection of Salmonella enterica and Six Species of Listeria in a Single Test , 2012, PloS one.
[36] M. Viaud,et al. Diversity of soil fungi studied by PCR–RFLP of ITS , 2000 .
[37] D. Stahl,et al. Recurring Seasonal Dynamics of Microbial Communities in Stream Habitats , 2006, Applied and Environmental Microbiology.
[38] K. Nkongolo,et al. Advances in monitoring soil microbial community dynamic and function , 2020, Journal of Applied Genetics.
[39] Christoph Heller,et al. A fully automated multicapillary electrophoresis device for DNA analysis , 1999 .
[40] J. Cairney,et al. Diversity and ecology of soil fungal communities: increased understanding through the application of molecular techniques. , 2004, Environmental microbiology.
[41] A. Nikolić,et al. Indirect diagnosis of haemophilia B by multiplex PCR/RFLP. , 2005, Clinical and laboratory haematology.
[42] M. Friedrich,et al. Formation of Pseudo-Terminal Restriction Fragments, a PCR-Related Bias Affecting Terminal Restriction Fragment Length Polymorphism Analysis of Microbial Community Structure , 2003, Applied and Environmental Microbiology.
[43] T. Bruns,et al. ITS primers with enhanced specificity for basidiomycetes ‐ application to the identification of mycorrhizae and rusts , 1993, Molecular ecology.
[44] P. Lemanceau,et al. Going back to the roots: the microbial ecology of the rhizosphere , 2013, Nature Reviews Microbiology.
[45] S. T. Buckland,et al. Long-term datasets in biodiversity research and monitoring: assessing change in ecological communities through time. , 2010, Trends in ecology & evolution.
[46] J. E. Christensen,et al. Rapid molecular diagnosis of lactobacillus bacteremia by terminal restriction fragment length polymorphism analysis of the 16S rRNA gene. , 2004, Clinical medicine & research.
[47] R. Conrad,et al. Diversity and ubiquity of thermophilic methanogenic archaea in temperate anoxic soils. , 2006, Environmental microbiology.
[48] B. Singh,et al. Use of Multiplex Terminal Restriction Fragment Length Polymorphism for Rapid and Simultaneous Analysis of Different Components of the Soil Microbial Community▿ , 2006, Applied and Environmental Microbiology.
[49] Peter Ricke,et al. Application of a Newly Developed ARB Software-Integrated Tool for In Silico Terminal Restriction Fragment Length Polymorphism Analysis Reveals the Dominance of a Novel pmoA Cluster in a Forest Soil , 2005, Applied and Environmental Microbiology.
[50] H. Smidt,et al. Successive DNA extractions improve characterization of soil microbial communities , 2017, PeerJ.