A reactive transport benchmark on modeling biogenic uraninite re-oxidation by Fe(III)-(hydr)oxides

A reactive transport benchmark on uranium (U) bioreduction and concomitant reoxidation has been developed based on the multicomponent biogeochemical reaction network presented by Spycher et al. (Geochim Cosmochim Acta 75:4426–4440, 2011). The benchmark problem consists of a model inter-comparison starting with the numerical simulations of the original batch experiments of Sani et al. (Geochim Cosmochim Acta 68:2639–2648, 2004). The batch model is then extended to 1D and 2D reactive transport models, designed to evaluate the model results for the key biogeochemical reaction processes and their coupling with physical transport. Simulations are performed with four different reactive transport simulators: PHREEQC, PHT3D, MIN3P, and TOUGHREACT. All of the simulators are able to capture the complex biogeochemical reaction kinetics and the coupling between transport and kinetic reaction network successfully in the same manner. For the dispersion-free variant of the problem, a 1D-reference solution was obtained by PHREEQC, which is not affected by numerical dispersion. PHT3D using the sequential non-iterative approach (SNIA) with an explicit TVD scheme and MIN3P using the global implicit method (GIM) with an implicit van Leer flux limiter provided the closest approximation to the PHREEQC results. Since the spatial weighting schemes for the advection term and numerical dispersion played an important role for the accuracy of the results, the simulators were further compared using different solution schemes. When all codes used the same spatial weighting scheme with finite-difference approximation, the simulation results agreed very well among all four codes. The model intercomparison for the 2D-case demonstrated a high level of sensitivity to the mixing of different waters at the dispersive front. Therefore this benchmark problem is well-suited to assess code performance for mixing-controlled reactive transport models in conjunction with complex reaction kinetics.

[1]  R. Sanford,et al.  Microbial activity and chemical weathering in the Middendorf aquifer, South Carolina , 2009 .

[2]  A. W. Harbaugh MODFLOW-2005 : the U.S. Geological Survey modular ground-water model--the ground-water flow process , 2005 .

[3]  B. V. Leer,et al.  Towards the ultimate conservative difference scheme. II. Monotonicity and conservation combined in a second-order scheme , 1974 .

[4]  B. V. Leer,et al.  Towards the Ultimate Conservative Difference Scheme , 1997 .

[5]  Derek R. Lovley,et al.  Bioremediation of uranium contamination with enzymatic uranium reduction , 1992 .

[6]  Steven B. Yabusaki,et al.  Multicomponent reactive transport modeling of uranium bioremediation field experiments , 2009 .

[7]  David W. Blowes,et al.  Multicomponent reactive transport modeling in variably saturated porous media using a generalized formulation for kinetically controlled reactions , 2002 .

[8]  J. Lloyd,et al.  Microbial detoxification of metals and radionuclides. , 2001, Current opinion in biotechnology.

[9]  Rainer Helmig,et al.  Numerical simulation of biodegradation controlled by transverse mixing , 1999 .

[10]  M. Gavrilescu,et al.  Characterization and remediation of soils contaminated with uranium. , 2009, Journal of hazardous materials.

[11]  Paul P. Wang,et al.  MT3DMS: A Modular Three-Dimensional Multispecies Transport Model for Simulation of Advection, Dispersion, and Chemical Reactions of Contaminants in Groundwater Systems; Documentation and User's Guide , 1999 .

[12]  D. A. Barry,et al.  MODFLOW/MT3DMS‐Based Reactive Multicomponent Transport Modeling , 2003, Ground water.

[13]  Peter Engesgaard,et al.  A geochemical transport model for redox-controlled movement of mineral fronts in groundwater flow systems: A case of nitrate removal by oxidation of pyrite , 1992 .

[14]  V. S. Tripathi,et al.  A critical evaluation of recent developments in hydrogeochemical transport models of reactive multichemical components , 1989 .

[15]  Elena Craft,et al.  DEPLETED AND NATURAL URANIUM: CHEMISTRY AND TOXICOLOGICAL EFFECTS , 2004, Journal of toxicology and environmental health. Part B, Critical reviews.

[16]  N. Spycher,et al.  Biogenic uraninite precipitation and its reoxidation by iron(III) (hydr)oxides: A reaction modeling approach , 2011 .

[17]  Thomas Kalbacher,et al.  Reactive transport codes for subsurface environmental simulation , 2015, Computational Geosciences.

[18]  Donald R. Metzler,et al.  Stimulating the In Situ Activity of Geobacter Species To Remove Uranium from the Groundwater of a Uranium-Contaminated Aquifer , 2003, Applied and Environmental Microbiology.

[19]  D. L. Parkhurst,et al.  User's guide to PHREEQC (Version 2)-a computer program for speciation, batch-reaction, one-dimensional transport, and inverse geochemical calculations , 1999 .

[20]  Edward R. Landa,et al.  Microbial reduction of uranium , 1991, Nature.

[21]  주진철,et al.  Applied Contaminant Transport Modeling, Second Edition , 2009 .

[22]  Karsten Pruess,et al.  TOUGHREACT User's Guide: A Simulation Program for Non-isothermal Multiphase Reactive Geochemical Transport in Variably Saturated Geologic Media, V1.2.1 , 2008 .

[23]  Karsten Pruess,et al.  TOUGHREACT Version 2.0: A simulator for subsurface reactive transport under non-isothermal multiphase flow conditions , 2011, Comput. Geosci..

[24]  B. Peyton,et al.  Reduction of Uranium(VI) under Sulfate-reducing Conditions in the Presence of Fe(III)-(hydr)oxides , 2004 .