DISMIRA: Prioritization of disease candidates in miRNA-disease associations based on maximum weighted matching inference model and motif-based analysis
暂无分享,去创建一个
Preetam Ghosh | Debmalya Barh | Bhanu K. Kamapantula | Sintia Silva de Almeida | Artur Silva | Vasco Azevedo | D. Barh | Joseph Nalluri | P. Ghosh | V. Azevedo | N. Jain | Artur Silva | B. Kamapantula | Neha Jain | Joseph J Nalluri | Bhanu K Kamapantula | Antaripa Bhattacharya | Rommel Thiago Juca Ramos | Antaripa Bhattacharya | Rommel Thiago Jucá Ramos | P. Ghosh
[1] T. Tuschl,et al. Mechanisms of gene silencing by double-stranded RNA , 2004, Nature.
[2] Hailin Chen,et al. Similarity-based methods for potential human microRNA-disease association prediction , 2013, BMC Medical Genomics.
[3] Aristotelis Tsirigos,et al. OMiR: Identification of associations between OMIM diseases and microRNAs. , 2011, Genomics.
[4] A. Barabasi,et al. Network medicine--from obesity to the "diseasome". , 2007, The New England journal of medicine.
[5] Alan F. Scott,et al. Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders , 2002, Nucleic Acids Res..
[6] N. Stanietsky,et al. The interaction of TIGIT with PVR and PVRL2 inhibits human NK cell cytotoxicity , 2009, Proceedings of the National Academy of Sciences.
[7] Yadong Wang,et al. Predicting human microRNA-disease associations based on support vector machine , 2010, 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).
[8] V. Ambros. The functions of animal microRNAs , 2004, Nature.
[9] M F Sanner,et al. Python: a programming language for software integration and development. , 1999, Journal of molecular graphics & modelling.
[10] A. Ruepp,et al. CIDeR: multifactorial interaction networks in human diseases , 2012, Genome Biology.
[11] S. Shen-Orr,et al. Network motifs: simple building blocks of complex networks. , 2002, Science.
[12] Yadong Wang,et al. Weighted Network-Based Inference of Human MicroRNA-Disease Associations , 2010, 2010 Fifth International Conference on Frontier of Computer Science and Technology.
[13] Sergei Egorov,et al. Pathway studio - the analysis and navigation of molecular networks , 2003, Bioinform..
[14] Jie Li,et al. Computational prediction of microRNA networks incorporating environmental toxicity and disease etiology , 2014, Scientific Reports.
[15] Guohua Wang,et al. An approach for prioritizing disease-related microRNAs based on genomic data integration , 2010, 2010 3rd International Conference on Biomedical Engineering and Informatics.
[16] Jeffrey Heer,et al. SpanningAspectRatioBank Easing FunctionS ArrayIn ColorIn Date Interpolator MatrixInterpola NumObjecPointI Rectang ISchedu Parallel Pause Scheduler Sequen Transition Transitioner Transiti Tween Co DelimGraphMLCon IData JSONCon DataField DataSc Dat DataSource Data DataUtil DirtySprite LineS RectSprite , 2011 .
[17] P. Sarnow,et al. Modulation of Hepatitis C Virus RNA Abundance by a Liver-Specific MicroRNA , 2005, Science.
[18] Xing Chen,et al. RWRMDA: predicting novel human microRNA-disease associations. , 2012, Molecular bioSystems.
[19] Dong Wang,et al. Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases , 2010, Bioinform..
[20] Bhanu K. Kamapantula,et al. miRegulome: a knowledge-base of miRNA regulomics and analysis , 2015, Scientific Reports.
[21] Mark E. J. Newman,et al. Power-Law Distributions in Empirical Data , 2007, SIAM Rev..
[22] Hailin Chen,et al. Prediction of Associations between OMIM Diseases and MicroRNAs by Random Walk on OMIM Disease Similarity Network , 2013, TheScientificWorldJournal.
[23] J. Steitz,et al. Switching from Repression to Activation: MicroRNAs Can Up-Regulate Translation , 2007, Science.
[24] A-L Barabási,et al. Structure and tie strengths in mobile communication networks , 2006, Proceedings of the National Academy of Sciences.
[25] Xing Chen,et al. Semi-supervised learning for potential human microRNA-disease associations inference , 2014, Scientific Reports.
[26] Yadong Wang,et al. miR2Disease: a manually curated database for microRNA deregulation in human disease , 2008, Nucleic Acids Res..
[27] Chuang Liu,et al. Prediction of Drug-Target Interactions and Drug Repositioning via Network-Based Inference , 2012, PLoS Comput. Biol..
[28] Zhenjun Hu,et al. VisANT: data-integrating visual framework for biological networks and modules , 2005, Nucleic Acids Res..
[29] R. Häggkvist,et al. Bipartite graphs and their applications , 1998 .
[30] Yun Xiao,et al. Prioritizing Candidate Disease miRNAs by Topological Features in the miRNA Target–Dysregulated Network: Case Study of Prostate Cancer , 2011, Molecular Cancer Therapeutics.
[31] D. Bartel. MicroRNAs Genomics, Biogenesis, Mechanism, and Function , 2004, Cell.
[32] C. Croce,et al. MicroRNA signatures in human cancers , 2006, Nature Reviews Cancer.
[33] S. Shen-Orr,et al. Networks Network Motifs : Simple Building Blocks of Complex , 2002 .
[34] Neha Jain,et al. Determining miRNA-disease associations using bipartite graph modelling , 2013, BCB.
[35] Q. Cui,et al. An Analysis of Human MicroRNA and Disease Associations , 2008, PloS one.
[36] Sebastian Wernicke,et al. FANMOD: a tool for fast network motif detection , 2006, Bioinform..
[37] Java Binding,et al. GNU Linear Programming Kit , 2011 .
[38] D. Flannanghan. JavaScript: The definitive guide , 1999 .