DNA as information: at the crossroads between biology, mathematics, physics and chemistry

On the one hand, biology, chemistry and also physics tell us how the process of translating the genetic information into life could possibly work, but we are still very far from a complete understanding of this process. On the other hand, mathematics and statistics give us methods to describe such natural systems—or parts of them—within a theoretical framework. Also, they provide us with hints and predictions that can be tested at the experimental level. Furthermore, there are peculiar aspects of the management of genetic information that are intimately related to information theory and communication theory. This theme issue is aimed at fostering the discussion on the problem of genetic coding and information through the presentation of different innovative points of view. The aim of the editors is to stimulate discussions and scientific exchange that will lead to new research on why and how life can exist from the point of view of the coding and decoding of genetic information. The present introduction represents the point of view of the editors on the main aspects that could be the subject of future scientific debate.

[1]  JAMES SUTHERLAND Education in Science , 1901, Nature.

[2]  G. Gamow Possible Relation between Deoxyribonucleic Acid and Protein Structures , 1954, Nature.

[3]  J. Crutchfield,et al.  What did Erwin mean? The physics of information from the materials genomics of aperiodic crystals and water to molecular information catalysts and life , 2015, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[4]  J. Berg Genome sequence of the nematode C. elegans: a platform for investigating biology. , 1998, Science.

[5]  John Frederick William Herschel,et al.  A Preliminary Discourse on the Study of Natural Philosophy , 1831 .

[6]  Wade Davis,et al.  The last of their kind , 2015 .

[7]  Juan G Roederer Pragmatic information in biology and physics , 2016, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[8]  Lutz Strüngmann,et al.  n-Nucleotide circular codes in graph theory , 2016, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[9]  J. Cartwright Directed self-assembly, genomic assembly complexity and the formation of biological structure, or, what are the genes for nacre? , 2016, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[10]  R. Fraser The structure of deoxyribose nucleic acid. , 2004, Journal of structural biology.

[11]  S. S. Hall Revolution postponed. , 2010, Scientific American.

[12]  Philip W. Anderson,et al.  WHAT MAD PURSUIT. A Personal View of Scientific Discovery. , 1989 .

[13]  F. Crick Central Dogma of Molecular Biology , 1970, Nature.

[14]  Sara Imari Walker,et al.  The informational architecture of the cell , 2015, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[15]  J. Claverie,et al.  What If There Are Only 30,000 Human Genes? , 2001, Science.

[16]  Christoph Adami,et al.  What is information?† , 2016, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[17]  Yu B Rumer Translation of ‘Systematization of Codons in the Genetic Code [III]’ by Yu. B. Rumer (1969) , 2016, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[18]  Y. Rumer Translation of ‘Systematization of Codons in the Genetic Code [I]’ by Yu. B. Rumer (1966) , 2016, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[19]  Peter R Wills,et al.  DNA as information , 2016, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[20]  F. Crick,et al.  Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid , 1953, Nature.

[21]  M. Barbieri A new theory of development: the generation of complexity in ontogenesis , 2016, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[22]  G. Castellani,et al.  Characterization of DNA methylation as a function of biological complexity via dinucleotide inter-distances , 2015, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[23]  M. Barbieri What is Information? , 2012, Biosemiotics.

[24]  C. H. WADDINGTON,et al.  Towards a Theoretical Biology , 1968, Nature.

[25]  Andrew Smith Genome sequence of the nematode C-elegans: A platform for investigating biology , 1998 .

[26]  R. Hull Summary and Concluding Remarks by the Second Session , 1990 .

[27]  F. Crick On protein synthesis. , 1958, Symposia of the Society for Experimental Biology.

[28]  Ilia J. Leitch,et al.  The largest eukaryotic genome of them all , 2010 .

[29]  Julyan H E Cartwright,et al.  Beyond crystals: the dialectic of materials and information , 2012, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[30]  T. Tlusty,et al.  Self-referring DNA and protein: a remark on physical and geometrical aspects , 2016, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[31]  Peter R Wills,et al.  The generation of meaningful information in molecular systems , 2016, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[32]  Lutz Strüngmann,et al.  Yury Borisovich Rumer and his ‘biological papers’ on the genetic code , 2016, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[33]  P. Ball The problems of biological information , 2016, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[34]  Simone Giannerini,et al.  The non-power model of the genetic code: a paradigm for interpreting genomic information , 2016, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[35]  A. Valleriani,et al.  Bacteria differently regulate mRNA abundance to specifically respond to various stresses , 2016, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[36]  Eugene V. Koonin,et al.  The meaning of biological information , 2016, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[37]  Y. Rumer Translation of ‘Systematization of Codons in the Genetic Code [II]’ by Yu. B. Rumer (1968) , 2016, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[38]  F. Crick,et al.  Genetical Implications of the Structure of Deoxyribonucleic Acid , 1953, Nature.