Peroxynitrite-induced oxidation and nitration products of guanine and 8-oxoguanine: structures and mechanisms of product formation.

Peroxynitrite induces DNA base damage predominantly at guanine (G) and 8-oxoguanine (8-oxoG) nucleobases via oxidation reactions. Nitration products are also observed, consistent with the generation of radical intermediates that can recombine with the (.)NO(2) formed during peroxynitrite degradation. The neutral G radical, G(.), reacts with (.)NO(2) to yield 8-nitroguanine (8-nitroG) and 5-nitro-4-guanidinohydantoin (NI), while for 8-oxoG we have proposed a reactive guanidinylidene radical intermediate. The products generated during peroxynitrite-mediated 8-oxoG oxidation depend on oxidant flux, with dehydroguanidinohydantoin (DGh), 2,4,6-trioxo-[1,3,5]triazinane-1-carboxamidine (CAC) and NO(2)-DGh predominating at high fluxes and spiroiminodihydantoin (Sp), guanidinohydantoin (Gh) and 4-hydroxy-2,5-dioxo-imidazolidine-4-carboxylic acid (HICA) predominating at low fluxes. Both product sets are observed at intermediate fluxes. It is therefore important in model systems to ensure that the relative concentrations are well controlled to minimize competing reactions that may not be relevant in vivo. Increasingly sophisticated systems for modeling peroxynitrite production in vivo are being developed and these should help with predicting the products most likely to be formed in vivo. Together with the emerging information on the genotoxic and mutational characteristics of the individual oxidation products, it may be found that the extent of tissue damage, mutational spectra and, hence, cancer risk may change as a function of peroxynitrite fluxes as different product combinations predominate.

[1]  S. Tannenbaum,et al.  Oxidation of 7,8-dihydro-8-oxoguanine affords lesions that are potent sources of replication errors in vivo. , 2002, Biochemistry.

[2]  K. Houk,et al.  Radical and Concerted Mechanisms in Oxidations of Amines, Sulfides, and Alkenes by Peroxynitrite, Peroxynitrous Acid, and the Peroxynitrite−CO2 Adduct: Density Functional Theory Transition Structures and Energetics , 1996 .

[3]  C. R. Saha‐Moeller,et al.  Photooxidation of 8‐Oxo‐7,8‐dihydro‐2′‐deoxyguanosine by Thermally Generated Triplet‐Excited Ketones from 3‐(Hydroxymethyl)‐3,4,4‐ trimethyl‐1,2‐dioxetane and Comparison with Type I and Type II Photosensitizers , 1997 .

[4]  B. Meunier,et al.  Efficient Oxidation of 2‘-Deoxyguanosine by Mn-TMPyP/KHSO5 to Imidazolone dIz without Formation of 8-Oxo-dG , 1998 .

[5]  G. Wogan,et al.  Peroxynitrite-induced mutation spectra of pSP189 following replication in bacteria and in human cells. , 1996, Mutation research.

[6]  William L. Neeley,et al.  Urea lesion formation in DNA as a consequence of 7,8-dihydro-8-oxoguanine oxidation and hydrolysis provides a potent source of point mutations. , 2005, Chemical research in toxicology.

[7]  Hiroshi Sugiyama,et al.  Product Analysis of GG-Specific Photooxidation of DNA via Electron Transfer: 2-Aminoimidazolone as a Major Guanine Oxidation Product , 1998 .

[8]  J. Hevel,et al.  Unraveling the biological significance of nitric oxide. , 1990, BioFactors.

[9]  J. Lind,et al.  Thermodynamics of peroxynitrite and its CO2 adduct. , 1997, Chemical research in toxicology.

[10]  N. Geacintov,et al.  The Carbonate Radical Is a Site-selective Oxidizing Agent of Guanine in Double-stranded Oligonucleotides* , 2001, The Journal of Biological Chemistry.

[11]  H. Masumoto,et al.  The reaction of ebselen with peroxynitrite. , 1996, Chemical research in toxicology.

[12]  Roger A. Jones,et al.  Peroxynitrite-induced reactions of synthetic oligo 2'-deoxynucleotides and DNA containing guanine: formation and stability of a 5-guanidino-4-nitroimidazole lesion. , 2002, Biochemistry.

[13]  J. Cadet,et al.  Peroxynitrite mediated oxidation of purine bases of nucleosides and isolated DNA. , 1996, Free radical research.

[14]  H. Ohshima,et al.  Formation of 8-nitroguanine by the reaction of guanine with peroxynitrite in vitro. , 1995, Carcinogenesis.

[15]  M. Bietti,et al.  The trap depth (in DNA) of 8-oxo-7,8-dihydro-2'deoxyguanosine as derived from electron-transfer equilibria in aqueous solution , 2000 .

[16]  S. Tannenbaum,et al.  A novel nitration product formed during the reaction of peroxynitrite with 2',3',5'-tri-O-acetyl-7,8-dihydro-8-oxoguanosine: N-nitro-N'-[1-(2,3,5-tri-O-acetyl-beta-D-erythro-pentofuranosyl)- 2, 4-dioxoimidazolidin-5-ylidene]guanidine. , 2000, Chemical research in toxicology.

[17]  J. Cadet,et al.  In vitro DNA synthesis opposite oxazolone and repair of this DNA damage using modified oligonucleotides. , 2000, Nucleic acids research.

[18]  H. Bartsch,et al.  Chronic infections and inflammatory processes as cancer risk factors: possible role of nitric oxide in carcinogenesis. , 1994, Mutation research.

[19]  C. Nathan,et al.  Nitric oxide as a secretory product of mammalian cells , 1992, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[20]  M. Gladwin,et al.  Enzymatic function of hemoglobin as a nitrite reductase that produces NO under allosteric control. , 2005, The Journal of clinical investigation.

[21]  J. Cadet,et al.  Nitrogen dioxide as an oxidizing agent of 8-oxo-7,8-dihydro-2'-deoxyguanosine but not of 2'-deoxyguanosine. , 2001, Chemical research in toxicology.

[22]  S. Tannenbaum,et al.  Quantitation of 8-oxoguanine and strand breaks produced by four oxidizing agents. , 1997, Chemical research in toxicology.

[23]  G. Schuster,et al.  Long-range charge transfer in DNA: transient structural distortions control the distance dependence. , 2000, Accounts of chemical research.

[24]  N. Geacintov,et al.  Combination of nitrogen dioxide radicals with 8-oxo-7,8-dihydroguanine and guanine radicals in DNA: oxidation and nitration end-products. , 2005, Journal of the American Chemical Society.

[25]  N. Tretyakova,et al.  Peroxynitrite-induced DNA damage in the supF gene: correlation with the mutational spectrum. , 2000, Mutation research.

[26]  H. Ohshima,et al.  Formation of 8‐nitroguanine in DNA treated with peroxynitrite in vitro and its rapid removal from DNA by depurination , 1995, FEBS letters.

[27]  P. Neta,et al.  Electron transfer reaction rates and equilibria of the carbonate and sulfate radical anions , 1991 .

[28]  J. Cadet,et al.  Repair and mutagenic potential of oxaluric acid, a major product of singlet oxygen-mediated oxidation of 8-oxo-7,8-dihydroguanine. , 2001, Chemical research in toxicology.

[29]  S. Tannenbaum,et al.  Spiroiminodihydantoin and guanidinohydantoin are the dominant products of 8-oxoguanosine oxidation at low fluxes of peroxynitrite: mechanistic studies with 18O. , 2004, Chemical research in toxicology.

[30]  J. Marwaha,et al.  A novel procedure for generating both nitric oxide and superoxide in situ from chemical sources at any chosen mole ratio. First application: tyrosine oxidation and a comparison with preformed peroxynitrite. , 2000, Chemical research in toxicology.

[31]  A. Grollman,et al.  Translesional Synthesis on DNA Templates Containing a Single Abasic Site , 1997, The Journal of Biological Chemistry.

[32]  S. Tannenbaum,et al.  A novel nitroimidazole compound formed during the reaction of peroxynitrite with 2',3',5'-tri-O-acetyl-guanosine. , 2001, Journal of the American Chemical Society.

[33]  Min Young Kim,et al.  Effects of peroxynitrite dose and dose rate on DNA damage and mutation in the supF shuttle vector. , 2005, Chemical research in toxicology.

[34]  W. Pryor,et al.  Peroxynitrite causes DNA nicks in plasmid pBR322. , 1995, Biochemical and biophysical research communications.

[35]  L. Ignarro Biosynthesis and metabolism of endothelium-derived nitric oxide. , 1990, Annual review of pharmacology and toxicology.

[36]  B. Ames,et al.  An adduct between peroxynitrite and 2'-deoxyguanosine: 4,5-dihydro-5-hydroxy-4-(nitrosooxy)-2'-deoxyguanosine. , 1996, Chemical research in toxicology.

[37]  R. Goyal,et al.  Redox chemistry of guanine and 8-oxyguanine and a comparison of the peroxidase-catalyzed and electrochemical oxidation of 8-oxyguanine , 1982 .

[38]  Kirk C. Prutzman,et al.  Mechanism of free radical nitric oxide-mediated Ras guanine nucleotide dissociation. , 2005, Journal of molecular biology.

[39]  G. Merényi,et al.  Tyrosine Nitration by Simultaneous Generation of ⋅NO and O⨪2 under Physiological Conditions , 2000, The Journal of Biological Chemistry.

[40]  J. Barton,et al.  Radical migration through the DNA helix: chemistry at a distance. , 1999, Metal ions in biological systems.

[41]  C. Burrows,et al.  The pH-dependent role of superoxide in riboflavin-catalyzed photooxidation of 8-oxo-7,8-dihydroguanosine. , 2001, Organic letters.

[42]  J. Essigmann,et al.  Mechanistic studies of ionizing radiation and oxidative mutagenesis: genetic effects of a single 8-hydroxyguanine (7-hydro-8-oxoguanine) residue inserted at a unique site in a viral genome. , 1990, Biochemistry.

[43]  J. Joseph,et al.  The peroxynitrite generator, SIN-1, becomes a nitric oxide donor in the presence of electron acceptors. , 1999, Archives of biochemistry and biophysics.

[44]  L. Loeb,et al.  Mutagenesis by apurinic/apyrimidinic sites. , 1986, Annual review of genetics.

[45]  J. K. Hurst,et al.  CO2-Catalyzed One-Electron Oxidations by Peroxynitrite: Properties of the Reactive Intermediate , 1998 .

[46]  W. Adam,et al.  Photooxidation of 8-Oxo-7,8-dihydro-2‘-deoxyguanosine by Thermally Generated Triplet-Excited Ketones from 3-(Hydroxymethyl)-3,4,4-trimethyl-1,2-dioxetane and Comparison with Type I and Type II Photosensitizers , 1996 .

[47]  C. Burrows,et al.  Oxidative Nucleobase Modifications Leading to Strand Scission. , 1998, Chemical reviews.

[48]  M. Gladwin,et al.  The biochemistry of nitric oxide, nitrite, and hemoglobin: role in blood flow regulation. , 2004, Free radical biology & medicine.

[49]  R. Goyal,et al.  Electrochemical and enzymic oxidation of guanosine and 8-hydroxyguanosine and the effects of oxidation products in mice , 1997 .

[50]  A. Grollman,et al.  Insertion of specific bases during DNA synthesis past the oxidation-damaged base 8-oxodG , 1991, Nature.

[51]  R. Semba,et al.  Accumulation of 8-nitroguanine in human gastric epithelium induced by Helicobacter pylori infection. , 2004, Biochemical and biophysical research communications.

[52]  D. McCafferty Peroxynitrite and inflammatory bowel disease , 2000, Gut.

[53]  G. Merényi,et al.  Free radical formation in the peroxynitrous acid (ONOOH)/peroxynitrite (ONOO-) system. , 1998, Chemical research in toxicology.

[54]  J. K. Hurst,et al.  Rapid reaction between peroxonitrite ion and carbon dioxide: Implications for biological activity , 1995 .

[55]  S. Tannenbaum,et al.  DNA damage in deoxynucleosides and oligonucleotides treated with peroxynitrite. , 1999, Chemical research in toxicology.

[56]  N. Geacintov,et al.  Combination Reactions of Superoxide with 8-Oxo-7,8-dihydroguanine Radicals in DNA , 2005, Journal of Biological Chemistry.

[57]  G. W. Buchko,et al.  2,2-Diamino-4-[(3,5-di-O-acetyl-2-deoxy-.beta.-D-erythro- pentofuranosyl)amino]-5-(2H)-oxazolone: a Novel and Predominant Radical Oxidation Product of 3',5'-Di-O-acetyl-2'-deoxyguanosine , 1994 .

[58]  B. Mayer,et al.  Lack of Tyrosine Nitration by Peroxynitrite Generated at Physiological pH* , 1998, The Journal of Biological Chemistry.

[59]  S. Tannenbaum,et al.  Quantitation of four guanine oxidation products from reaction of DNA with varying doses of peroxynitrite. , 2005, Chemical research in toxicology.

[60]  U. Pischel,et al.  Spiroiminodihydantoin is a major product in the photooxidation of 2'-deoxyguanosine by the triplet states and oxyl radicals generated from hydroxyacetophenone photolysis and dioxetane thermolysis. , 2002, Organic letters.

[61]  W. Pryor,et al.  Acceleration of peroxynitrite oxidations by carbon dioxide. , 1996, Archives of biochemistry and biophysics.

[62]  S R Tannenbaum,et al.  Spiroiminodihydantoin is the major product of the 8-oxo-7,8-dihydroguanosine reaction with peroxynitrite in the presence of thiols and guanosine photooxidation by methylene blue. , 2001, Organic letters.

[63]  D. Wink,et al.  The Nitric Oxide/Superoxide Assay , 1997, The Journal of Biological Chemistry.

[64]  V. Bowry,et al.  The Complex Chemistry of Peroxynitrite Decomposition: New Insights1 , 1998 .

[65]  Slobodan V. Jovanovic,et al.  How Easily Oxidizable Is DNA? One-Electron Reduction Potentials of Adenosine and Guanosine Radicals in Aqueous Solution , 1997 .

[66]  N. Geacintov,et al.  Miscoding events during DNA synthesis past the nitration-damaged base 8-nitroguanine. , 2005, Biochemistry.

[67]  C. Burrows,et al.  Characterization of spiroiminodihydantoin as a product of one-electron oxidation of 8-Oxo-7,8-dihydroguanosine. , 2000, Organic letters.

[68]  C. Nathan,et al.  Nitric oxide and macrophage function. , 1997, Annual review of immunology.

[69]  J. Garthwaite Glutamate, nitric oxide and cell-cell signalling in the nervous system , 1991, Trends in Neurosciences.

[70]  J. Cadet,et al.  Reaction of singlet oxygen with 2'-deoxyguanosine and DNA. Isolation and characterization of the main oxidation products. , 1995, Chemical research in toxicology.

[71]  Steen Steenken,et al.  Purine bases, nucleosides, and nucleotides: aqueous solution redox chemistry and transformation reactions of their radical cations and e- and OH adducts , 1989 .

[72]  B. Mayer,et al.  Dityrosine Formation Outcompetes Tyrosine Nitration at Low Steady-state Concentrations of Peroxynitrite , 2000, The Journal of Biological Chemistry.

[73]  S. Goldstein,et al.  Formation of Peroxynitrate from the Reaction of Peroxynitrite with CO2: Evidence for Carbonate Radical Production , 1998 .

[74]  C. Nathan,et al.  Regulation of biosynthesis of nitric oxide. , 1994, The Journal of biological chemistry.

[75]  N. Tretyakova,et al.  Peroxynitrite-induced reactions of synthetic oligonucleotides containing 8-oxoguanine. , 1999, Chemical research in toxicology.

[76]  J. Cadet,et al.  Oxaluric Acid as the Major Product of Singlet Oxygen-Mediated Oxidation of 8-Oxo-7,8-dihydroguanine in DNA , 2000 .

[77]  S R Tannenbaum,et al.  The chemistry of DNA damage from nitric oxide and peroxynitrite. , 1999, Mutation research.

[78]  F. Guengerich,et al.  Steady-state and pre-steady-state kinetic analysis of dNTP insertion opposite 8-oxo-7,8-dihydroguanine by Escherichia coli polymerases I exo- and II exo-. , 1996, Biochemistry.

[79]  H. C. Yeo,et al.  DNA oxidation matters: the HPLC-electrochemical detection assay of 8-oxo-deoxyguanosine and 8-oxo-guanine. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[80]  J. Kleibeuker,et al.  Expression of nitric oxide synthases and formation of nitrotyrosine and reactive oxygen species in inflammatory bowel disease , 1998, The Journal of pathology.

[81]  M. Newcomb,et al.  The Generation of Nitrogen Radicals and Their Cyclizations for the Construction of the Pyrrolidine Nucleus , 1993 .

[82]  J. Weidner,et al.  Expression of inducible nitric oxide synthase and nitrotyrosine in colonic epithelium in inflammatory bowel disease. , 1996, Gastroenterology.

[83]  W. Pryor,et al.  Competitive reactions of peroxynitrite with 2'-deoxyguanosine and 7,8-dihydro-8-oxo-2'-deoxyguanosine (8-oxodG): relevance to the formation of 8-oxodG in DNA exposed to peroxynitrite. , 1996, Free radical biology & medicine.

[84]  William L. Neeley,et al.  In Vivo Bypass Efficiencies and Mutational Signatures of the Guanine Oxidation Products 2-Aminoimidazolone and 5-Guanidino-4-nitroimidazole* , 2004, Journal of Biological Chemistry.

[85]  William L. Neeley,et al.  The hydantoin lesions formed from oxidation of 7,8-dihydro-8-oxoguanine are potent sources of replication errors in vivo. , 2003, Biochemistry.

[86]  L. Loeb,et al.  8-Hydroxyguanine, an abundant form of oxidative DNA damage, causes G----T and A----C substitutions. , 1992, The Journal of biological chemistry.

[87]  B. Freeman,et al.  Peroxynitrite reaction with carbon dioxide/bicarbonate: kinetics and influence on peroxynitrite-mediated oxidations. , 1996, Archives of biochemistry and biophysics.

[88]  H. Ohshima,et al.  Effects of carbon dioxide/bicarbonate on induction of DNA single‐strand breaks and formation of 8‐nitroguanine, 8‐oxoguanine and base‐propenal mediated by peroxynitrite , 1996, FEBS letters.

[89]  C. Szabó,et al.  DNA damage induced by peroxynitrite: subsequent biological effects. , 1997, Nitric oxide : biology and chemistry.

[90]  K. Kahn,et al.  Identification of the True Product of the Urate Oxidase Reaction , 1997 .

[91]  S. Moncada,et al.  Nitric oxide: physiology, pathophysiology, and pharmacology. , 1991, Pharmacological reviews.

[92]  D. Stanbury Reduction potentials involving inorganic free radicals in aqueous solution , 1989 .

[93]  R. Radi,et al.  Pathways of peroxynitrite oxidation of thiol groups. , 1997, The Biochemical journal.

[94]  C. Burrows,et al.  Insertion of dGMP and dAMP during in vitro DNA synthesis opposite an oxidized form of 7,8-dihydro-8-oxoguanine. , 1999, Nucleic acids research.

[95]  J. Cadet,et al.  Photosensitized formation of 7,8-dihydro-8-oxo-2'-deoxyguanosine (8-hydroxy-2'-deoxyguanosine) in DNA by riboflavin: a nonsinglet oxygen-mediated reaction , 1992 .

[96]  A. G. Fallis,et al.  Free radical cyclizations involving nitrogen , 1997 .

[97]  J. Cadet,et al.  Photosensitized Reaction of 8-Oxo-7,8-dihydro-2‘-deoxyguanosine: Identification of 1-(2-Deoxy-β-d-erythro-pentofuranosyl)cyanuric Acid as the Major Singlet Oxygen Oxidation Product , 1996 .

[98]  Dan Yang,et al.  Ketone-Catalyzed Decomposition of Peroxynitrite via Dioxirane Intermediates , 1999 .

[99]  A. Chworos,et al.  Guanine oxidation: NMR characterization of a dehydro-guanidinohydantoin residue generated by a 2e-oxidation of d(GpT). , 2001, Journal of the American Chemical Society.

[100]  J. K. Hurst,et al.  Hydroxyl Radical Formation during Peroxynitrous Acid Decomposition , 1999 .

[101]  Salvador Moncada,et al.  NITRIC OXIDE PHYSIOLOGY , 1997 .

[102]  C. Burrows,et al.  In vitro nucleotide misinsertion opposite the oxidized guanosine lesions spiroiminodihydantoin and guanidinohydantoin and DNA synthesis past the lesions using Escherichia coli DNA polymerase I (Klenow fragment). , 2002, Biochemistry.

[103]  Steven R Tannenbaum,et al.  Reactive nitrogen species in the chemical biology of inflammation. , 2004, Archives of biochemistry and biophysics.

[104]  W. Pryor,et al.  Reactions of peroxynitrite with aldehydes as probes for the reactive intermediates responsible for biological nitration. , 1997, Chemical research in toxicology.

[105]  M. Marletta,et al.  Nitric oxide synthase: Aspects concerning structure and catalysis , 1994, Cell.

[106]  S. Tannenbaum,et al.  Peroxynitrite reaction products of 3',5'-di-O-acetyl-8-oxo-7, 8-dihydro-2'-deoxyguanosine. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[107]  E. Sagstuen,et al.  ESR and ENDOR study of the guanine cation: Secondary product in 5’‐dGMP , 1987 .