Fusion of binding domains to Thermobifida cellulosilytica cutinase to tune sorption characteristics and enhancing PET hydrolysis.

A cutinase from Thermomyces cellullosylitica (Thc_Cut1), hydrolyzing the synthetic polymer polyethylene terephthalate (PET), was fused with two different binding modules to improve sorption and thereby hydrolysis. The binding modules were from cellobiohydrolase I from Hypocrea jecorina (CBM) and from a polyhydroxyalkanoate depolymerase from Alcaligenes faecalis (PBM). Although both binding modules have a hydrophobic nature, it was possible to express the proteins in E. coli . Both fusion enzymes and the native one had comparable kcat values in the range of 311 to 342 s(-1) on pNP-butyrate, while the catalytic efficiencies kcat/Km decreased from 0.41 s(-1)/ μM (native enzyme) to 0.21 and 0.33 s(-1)/μM for Thc_Cut1+PBM and Thc_Cut1+CBM, respectively. The fusion enzymes were active both on the insoluble PET model substrate bis(benzoyloxyethyl) terephthalate (3PET) and on PET although the hydrolysis pattern was differed when compared to Thc_Cut1. Enhanced adsorption of the fusion enzymes was visible by chemiluminescence after incubation with a 6xHisTag specific horseradish peroxidase (HRP) labeled probe. Increased adsorption to PET by the fusion enzymes was confirmed with Quarz Crystal Microbalance (QCM-D) analysis and indeed resulted in enhanced hydrolysis activity (3.8× for Thc_Cut1+CBM) on PET, as quantified, based on released mono/oligomers.

[1]  M. Hashimoto,et al.  The roles of the C-terminal domain and type III domains of chitinase A1 from Bacillus circulans WL-12 in chitin degradation , 1994, Journal of bacteriology.

[2]  T. Reinikainen,et al.  Effects of pH and high ionic strength on the adsorption and activity of native and mutated cellobiohydrolase I from Trichoderma reesei , 1995, Proteins.

[3]  W. Zimmermann,et al.  Biochemical characterization of the cutinases from Thermobifida fusca , 2010 .

[4]  D. Bolam,et al.  Carbohydrate-binding modules: fine-tuning polysaccharide recognition. , 2004, The Biochemical journal.

[5]  G. Guebitz,et al.  Characterization of a new cutinase from Thermobifida alba for PET-surface hydrolysis , 2012 .

[6]  Brandi L. Cantarel,et al.  The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics , 2008, Nucleic Acids Res..

[7]  T. Iwata,et al.  Nonhydrolytic fragmentation of a poly[(R)-3-hydroxybutyrate] single crystal revealed by use of a mutant of polyhydroxybutyrate depolymerase. , 2002, Biomacromolecules.

[8]  G. Guebitz,et al.  Hydrolysis of polyethyleneterephthalate by p‐nitrobenzylesterase from Bacillus subtilis , 2011, Biotechnology progress.

[9]  Xavier Turon,et al.  Enzymatic kinetics of cellulose hydrolysis: a QCM-D study. , 2008, Langmuir : the ACS journal of surfaces and colloids.

[10]  Margarida Casal,et al.  Tailoring cutinase activity towards polyethylene terephthalate and polyamide 6,6 fibers. , 2007, Journal of biotechnology.

[11]  Ren Wei,et al.  High level expression of a hydrophobic poly(ethylene terephthalate)-hydrolyzing carboxylesterase from Thermobifida fusca KW3 in Escherichia coli BL21(DE3). , 2010, Journal of biotechnology.

[12]  Y. Doi,et al.  Function of the catalytic domain of poly(3-hydroxybutyrate) depolymerase from Pseudomonas stutzeri. , 2000, Biomacromolecules.

[13]  Manfred Zinn,et al.  Enzymatic surface hydrolysis of PET : effect of structural diversity on kinetic properties of cutinases from thermobifida , 2011 .

[14]  R. Rodríguez-Sanoja,et al.  Carbohydrate-binding domains: multiplicity of biological roles , 2010, Applied Microbiology and Biotechnology.

[15]  W. Minor,et al.  Structure of a microbial homologue of mammalian platelet-activating factor acetylhydrolases: Streptomyces exfoliatus lipase at 1.9 A resolution. , 1998, Structure.

[16]  C. Tardif,et al.  CelG from Clostridium cellulolyticum: a multidomain endoglucanase acting efficiently on crystalline cellulose , 1997, Journal of bacteriology.

[17]  A. Annila,et al.  Three‐dimensional structures of three engineered cellulose‐binding domains of cellobiohydrolase I from Trichoderma reesei , 1997, Protein science : a publication of the Protein Society.

[18]  Herbert Pobeheim,et al.  New model substrates for enzymes hydrolysing polyethyleneterephthalate and polyamide fibres. , 2006, Journal of biochemical and biophysical methods.

[19]  Margarida Casal,et al.  Engineered Thermobifida fusca cutinase with increased activity on polyester substrates. , 2011, Biotechnology journal.

[20]  H. Ohara,et al.  Sequence of celQ and properties of CelQ, a component of the Clostridium thermocellum cellulosome , 2001, Applied Microbiology and Biotechnology.

[21]  Richard A. Gross,et al.  Cutinase-Catalyzed Hydrolysis of Poly(ethylene terephthalate) , 2009 .

[22]  G. Guebitz,et al.  Enzymatic surface hydrolysis of PET enhances bonding in PVC coating , 2008 .

[23]  D. Jendrossek,et al.  Microbial degradation of polyesters. , 2001, Advances in biochemical engineering/biotechnology.

[24]  G. Guebitz,et al.  A New Esterase from Thermobifida halotolerans Hydrolyses Polyethylene Terephthalate (PET) and Polylactic Acid (PLA) , 2012 .

[25]  M. Himmel,et al.  Interactions of the complete cellobiohydrolase I from Trichodera reesei with microcrystalline cellulose Iβ , 2008 .

[26]  T. Iwata,et al.  The adsorption of substrate-binding domain of PHB depolymerases to the surface of poly(3-hydroxybutyric acid). , 1998, International journal of biological macromolecules.

[27]  G. Guebitz,et al.  Effect of the agitation on the adsorption and hydrolytic efficiency of cutinases on polyethylene terephthalate fibres , 2007 .

[28]  Didier Nurizzo,et al.  Structural and thermodynamic dissection of specific mannan recognition by a carbohydrate binding module, TmCBM27. , 2003, Structure.

[29]  V. Nierstrasz,et al.  Enzymatic surface modification of poly(ethylene terephthalate). , 2005, Journal of biotechnology.

[30]  Y. Doi,et al.  Analysis of adsorption function of polyhydroxybutyrate depolymerase from Alcaligenes faecalis T1 by using a quartz crystal microbalance. , 2001, Biomacromolecules.

[31]  K. Sakka,et al.  Characterization of a Cellulase Containing a Family 30 Carbohydrate-Binding Module (CBM) Derived from Clostridium thermocellum CelJ: Importance of the CBM to Cellulose Hydrolysis , 2003, Journal of bacteriology.

[32]  D. Kilburn,et al.  Non–Hydrolytic Disruption of Cellulose Fibres by the Binding Domain of a Bacterial Cellulase , 1991, Bio/Technology.

[33]  J. Sugiyama,et al.  The binding specificity and affinity determinants of family 1 and family 3 cellulose binding modules , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[34]  D. Kilburn,et al.  C1-Cx revisited: intramolecular synergism in a cellulase. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[35]  G. Guebitz,et al.  Covalent immobilisation of protease and laccase substrates onto siloxanes. , 2010, Chemosphere.

[36]  Maike Rabe,et al.  Enzymatic and chemical hydrolysis of poly(ethylene terephthalate) fabrics , 2008 .

[37]  D. Jendrossek Microbial degradation of polyesters: a review on extracellular poly(hydroxyalkanoic acid) depolymerases , 1998 .

[38]  I. Donelli,et al.  Surface structure and properties of poly-(ethylene terephthalate) hydrolyzed by alkali and cutinase , 2010 .

[39]  Ling Yuan,et al.  Engineering of a multifunctional hemicellulase , 2009, Biotechnology Letters.

[40]  Samuel L. DeLuca,et al.  Practically Useful: What the Rosetta Protein Modeling Suite Can Do for You , 2010, Biochemistry.

[41]  D. Kilburn,et al.  The cellulose‐binding domain of endoglucanase A (CenA) from Cellulomonas fimi: evidence for the involvement of tryptophan residues in binding , 1994, Molecular microbiology.

[42]  H. Schrempf,et al.  Binding and substrate specificities of a Streptomyces olivaceoviridis chitinase in comparison with its proteolytically processed form. , 1995, European journal of biochemistry.

[43]  Udo Schnupf,et al.  Sugar-binding sites on the surface of the carbohydrate-binding module of CBH I from Trichoderma reesei. , 2011, Carbohydrate research.

[44]  Carsten Kutzner,et al.  GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation. , 2008, Journal of chemical theory and computation.

[45]  Guoqiang Chen,et al.  Reduced mouse fibroblast cell growth by increased hydrophilicity of microbial polyhydroxyalkanoates via hyaluronan coating. , 2003, Biomaterials.

[46]  K. Imamura,et al.  On the adsorption of proteins on solid surfaces, a common but very complicated phenomenon. , 2001, Journal of bioscience and bioengineering.

[47]  G. Guebitz,et al.  Enzymatic surface hydrolysis of poly(ethylene terephthalate) and bis(benzoyloxyethyl) terephthalate by lipase and cutinase in the presence of surface active molecules. , 2009, Journal of biotechnology.

[48]  K. Kleinschek,et al.  Electrokinetic properties of commercial vascular grafts , 2006 .

[49]  Y. Doi,et al.  Enzymatic degradation of poly(L-lactide) film by proteinase K: quartz crystal microbalance and atomic force microscopy study. , 2005, Biomacromolecules.

[50]  Y. Doi,et al.  Substrate and binding specificities of bacterial polyhydroxybutyrate depolymerases. , 1999, International journal of biological macromolecules.

[51]  T. Imanaka,et al.  Interaction force of chitin-binding domains onto chitin surface. , 2008, Biomacromolecules.

[52]  Jens Meiler,et al.  ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules. , 2011, Methods in enzymology.

[53]  Jian Chen,et al.  Characterization of Thermobifida fusca Cutinase-Carbohydrate-Binding Module Fusion Proteins and Their Potential Application in Bioscouring , 2010, Applied and Environmental Microbiology.

[54]  P. Simpson,et al.  Pseudomonas cellulose-binding domains mediate their effects by increasing enzyme substrate proximity. , 1998, The Biochemical journal.

[55]  P. Hägglund,et al.  A cellulose-binding module of the Trichoderma reesei beta-mannanase Man5A increases the mannan-hydrolysis of complex substrates. , 2003, Journal of biotechnology.