Applications and perspectives of multi-parameter flow cytometry to microbial biofuels production processes.

Conventional microbiology methods used to monitor microbial biofuels production are based on off-line analyses. The analyses are, unfortunately, insufficient for bioprocess optimization. Real time process control strategies, such as flow cytometry (FC), can be used to monitor bioprocess development (at-line) by providing single cell information that improves process model formulation and validation. This paper reviews the current uses and potential applications of FC in biodiesel, bioethanol, biomethane, biohydrogen and fuel cell processes. By highlighting the inherent accuracy and robustness of the technique for a range of biofuel processing parameters, more robust monitoring and control may be implemented to enhance process efficiency.

[1]  H. Guzman,et al.  Analysis of interspecific variation in relative fatty acid composition: use of flow cytometry to estimate unsaturation index and relative polyunsaturated fatty acid content in microalgae , 2011, Journal of Applied Phycology.

[2]  M. V. van Loosdrecht,et al.  Mixed culture biotechnology for bioenergy production. , 2007, Current opinion in biotechnology.

[3]  R. Amann,et al.  Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations , 1990, Applied and environmental microbiology.

[4]  Hee-Mock Oh,et al.  Selection of microalgae for lipid production under high levels carbon dioxide. , 2010, Bioresource technology.

[5]  De-hua Liu,et al.  Perspectives of microbial oils for biodiesel production , 2008, Applied Microbiology and Biotechnology.

[6]  D. Veal,et al.  Evaluation of light scattering and autofluorescent properties of Brewer's worts for flow cytometric analysis of yeast viability , 2000 .

[7]  Qingyu Wu,et al.  Large‐scale biodiesel production from microalga Chlorella protothecoides through heterotrophic cultivation in bioreactors , 2007, Biotechnology and bioengineering.

[8]  Mo Xian,et al.  Biodiesel production from oleaginous microorganisms , 2009 .

[9]  F. Bai,et al.  Mechanisms of yeast stress tolerance and its manipulation for efficient fuel ethanol production. , 2009, Journal of biotechnology.

[10]  M. Galbe,et al.  Controlled fed-batch fermentations of dilute-acid hydrolysate in pilot development unit scale , 2004, Applied biochemistry and biotechnology.

[11]  Anneli Petersson,et al.  Increased tolerance and conversion of inhibitors in lignocellulosic hydrolysates by Saccharomyces cerevisiae , 2007 .

[12]  C. Hewitt,et al.  An industrial application of multiparameter flow cytometry: assessment of cell physiological state and its application to the study of microbial fermentations. , 2001, Cytometry.

[13]  Qingyu Wu,et al.  High-density fermentation of microalga Chlorella protothecoides in bioreactor for microbio-diesel production , 2008, Applied Microbiology and Biotechnology.

[14]  H Harada,et al.  Recent advances in methane fermentation technology. , 2001, Current opinion in biotechnology.

[15]  Susann Müller,et al.  Population profiles of a commercial yeast strain in the course of brewing , 2004 .

[16]  P. Petrova,et al.  Perspectives for the Production of Bioethanol from Lignocellulosic Materials , 2010 .

[17]  P. Foladori,et al.  Assessment of activated sludge viability with flow cytometry. , 2002, Water research.

[18]  Perry L. McCarty,et al.  Anaerobic wastewater treatment , 1986 .

[19]  Ana Cristina Oliveira,et al.  Oil Production Towards Biofuel from Autotrophic Microalgae Semicontinuous Cultivations Monitorized by Flow Cytometry , 2009, Applied biochemistry and biotechnology.

[20]  David Jameson,et al.  Fluorescent measurement of microalgal neutral lipids. , 2007, Journal of microbiological methods.

[21]  L. Gouveia,et al.  A symbiotic gas exchange between bioreactors enhances microalgal biomass and lipid productivities: taking advantage of complementary nutritional modes , 2011, Journal of Industrial Microbiology & Biotechnology.

[22]  Steven C Ricke,et al.  Current perspectives on detection of microbial contamination in bioethanol fermentors. , 2010, Bioresource technology.

[23]  H. Mendoza,et al.  Flow cytometric determination of lipid content in a marine dinoflagellate, Crypthecodinium cohnii , 2003, Journal of Applied Phycology.

[24]  B. Rittmann Opportunities for renewable bioenergy using microorganisms. , 2008, Biotechnology and bioengineering.

[25]  Lisa R. Hilliard,et al.  A rapid bioassay for single bacterial cell quantitation using bioconjugated nanoparticles. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[26]  Luis A. García,et al.  Application of flow cytometry to industrial microbial bioprocesses , 2010 .

[27]  Ye Sun,et al.  Hydrolysis of lignocellulosic materials for ethanol production: a review. , 2002, Bioresource technology.

[28]  I. Mannazzu,et al.  Behaviour of Saccharomyces cerevisiae wine strains during adaptation to unfavourable conditions of fermentation on synthetic medium: cell lipid composition, membrane integrity, viability and fermentative activity. , 2008, International journal of food microbiology.

[29]  C. Hewitt,et al.  Analysis of bacterial function by multi-colour fluorescence flow cytometry and single cell sorting. , 2000, Journal of microbiological methods.

[30]  Alvin W. Nienow,et al.  The Impact of Fluid Mechanical Stress on Saccharomyces Cerevisiae Cells During Continuous Cultivation in an Agitated, Aerated Bioreactor; its Implication for Mixing in the Brewing Process and Aerobic Fermentations , 2003 .

[31]  D. Veal,et al.  A flow-cytometric method for determination of yeast viability and cell number in a brewery. , 2003, FEMS yeast research.

[32]  Luísa Gouveia,et al.  Neochloris oleabundans UTEX #1185: a suitable renewable lipid source for biofuel production , 2009, Journal of Industrial Microbiology & Biotechnology.

[33]  Y. Chisti Biodiesel from microalgae. , 2007, Biotechnology advances.

[34]  Arief Widjaja,et al.  Study of increasing lipid production from fresh water microalgae Chlorella vulgaris , 2009 .

[35]  C. A. Kent,et al.  The use of multi-parameter flow cytometry to study the impact of limiting substrate, agitation intensity, and dilution rate on cell aggregation during Bacillus licheniformis CCMI 1034 aerobic continuous culture fermentations. , 2005, Biotechnology and bioengineering.

[36]  J. Lay,et al.  Flow-FISH analysis and isolation of clostridial strains in an anaerobic semi-solid bio-hydrogen producing system by hydrogenase gene target , 2007, Applied Microbiology and Biotechnology.

[37]  Using Multi-parameter Flow Cytometry to Monitor the Yeast Rhodotorula glutinis CCMI 145 Batch Growth and Oil Production Towards Biodiesel , 2010, Applied biochemistry and biotechnology.

[38]  B. Gibson,et al.  Yeast responses to stresses associated with industrial brewery handling. , 2007, FEMS microbiology reviews.

[39]  R. Thauer Biochemistry of methanogenesis: a tribute to Marjory Stephenson. 1998 Marjory Stephenson Prize Lecture. , 1998, Microbiology.

[40]  F. Srienc,et al.  Rapid strain improvement through optimized evolution in the cytostat , 2009, Biotechnology and bioengineering.

[41]  Teresa Lopes da Silva,et al.  Multi-parameter flow cytometry as a tool to monitor heterotrophic microalgal batch fermentations for oil production towards biodiesel , 2009 .

[42]  Christopher J Hewitt,et al.  The application of multi-parameter flow cytometry to monitor individual microbial cell physiological state. , 2004, Advances in biochemical engineering/biotechnology.

[43]  Hui Luo,et al.  A new method for preparing raw material for biodiesel production , 2006 .

[44]  Y. Kamisaka,et al.  Rapid estimation of lipids in oleaginous fungi and yeasts using Nile red fluorescence. , 2004, Journal of microbiological methods.

[45]  Willy Verstraete,et al.  Microbial Fuel Cells: Recent Advances, Bacterial Communities and Application Beyond Electricity Generation , 2008 .

[46]  C. Foyer,et al.  ASCORBATE AND GLUTATHIONE: Keeping Active Oxygen Under Control. , 1998, Annual review of plant physiology and plant molecular biology.

[47]  S. Fowler,et al.  Nile red: a selective fluorescent stain for intracellular lipid droplets , 1985, The Journal of cell biology.

[48]  M. S. Cooper,et al.  Visualizing "green oil" in live algal cells. , 2010, Journal of bioscience and bioengineering.

[49]  Andreas Tauch,et al.  Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. , 2008, Journal of biotechnology.

[50]  X. Miao,et al.  Biodiesel production from heterotrophic microalgal oil. , 2006, Bioresource technology.

[51]  Monitoring Rhodotorula glutinis CCMI 145 physiological response and oil production growing on xylose and glucose using multi-parameter flow cytometry. , 2011, Bioresource technology.

[52]  Bo Liu,et al.  Optimization of Culture Conditions for Lipid Production by Rhodosporidium toruloides , 2006 .

[53]  T. Tornabene,et al.  Lipid composition of the nitrogen starved green alga Neochloris oleoabundans , 1983 .

[54]  Nagamany Nirmalakhandan,et al.  Enhancing fermentative hydrogen production from sucrose. , 2010, Bioresource technology.

[55]  In S. Kim,et al.  Effect of different substrates on the performance, bacterial diversity, and bacterial viability in microbial fuel cells. , 2009, Bioresource technology.

[56]  H. Shimizu,et al.  Physiological analysis of yeast cells by flow cytometry during serial-repitching of low-malt beer fermentation. , 2007, Journal of bioscience and bioengineering.

[57]  M. Elshahed Microbiological aspects of biofuel production: Current status and future directions , 2010 .

[58]  M. Montero,et al.  Isolation of high-lipid content strains of the marine microalga Tetraselmis suecica for biodiesel production by flow cytometry and single-cell sorting , 2011, Journal of Applied Phycology.

[59]  Alya Limayem,et al.  Antimicrobial strategies for limiting bacterial contaminants in fuel bioethanol fermentations , 2011 .

[60]  D. Lloyd,et al.  Flow cytometric monitoring of rhodamine 123 and a cyanine dye uptake by yeast during cider fermentation , 1996 .

[61]  R. Amann,et al.  Flow cytometric analysis of activated sludge with rRNA-targeted probes , 1995, Applied and environmental microbiology.

[62]  I. Mannazzu,et al.  ROS accumulation and oxidative damage to cell structures in Saccharomyces cerevisiae wine strains during fermentation of high-sugar-containing medium. , 2008, Biochimica et biophysica acta.

[63]  E. Papoutsakis,et al.  Flow cytometry for bacteria: enabling metabolic engineering, synthetic biology and the elucidation of complex phenotypes. , 2010, Current opinion in biotechnology.

[64]  J. Obbard,et al.  Enhanced lipid production in Nannochloropsis sp. using fluorescence‐activated cell sorting , 2011 .

[65]  S. Freguia,et al.  Cathodic oxygen reduction catalyzed by bacteria in microbial fuel cells , 2008, The ISME Journal.

[66]  Hong Liu,et al.  Production of electricity from acetate or butyrate using a single-chamber microbial fuel cell. , 2005, Environmental science & technology.

[67]  W. Verstraete,et al.  Biofuel Cells Select for Microbial Consortia That Self-Mediate Electron Transfer , 2004, Applied and Environmental Microbiology.

[68]  Anoop Singh,et al.  Production of liquid biofuels from renewable resources , 2011 .

[69]  F. Letourneau,et al.  Inhibition of beet molasses alcoholic fermentation by lactobacilli , 1990, Applied Microbiology and Biotechnology.