Integration of cryo-EM with atomic and protein-protein interaction data.
暂无分享,去创建一个
[1] A. Hopfinger. Computer-assisted drug design. , 1985, Journal of medicinal chemistry.
[2] M. Karplus,et al. Crystallographic R Factor Refinement by Molecular Dynamics , 1987, Science.
[3] F. Kaye,et al. Identification of cellular proteins that can interact specifically with the T/ElA-binding region of the retinoblastoma gene product , 1991, Cell.
[4] T. Blundell,et al. Comparative protein modelling by satisfaction of spatial restraints. , 1993, Journal of molecular biology.
[5] R. Chace. Lords of the ring , 1994 .
[6] R. Huber,et al. Crystal structure of the 20S proteasome from the archaeon T. acidophilum at 3.4 A resolution. , 1995, Science.
[7] W Baumeister,et al. Self-compartmentalizing proteases. , 1997, Trends in biochemical sciences.
[8] H. Feldmann,et al. Unified nomenclature for subunits of the Saccharomyces cerevisiae proteasome regulatory particle. , 1998, Trends in biochemical sciences.
[9] C. Chothia,et al. Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[10] D. Whelan,et al. THE PROMISE ( AND PERIL ) , 2017 .
[11] J. Mccammon,et al. Situs: A package for docking crystal structures into low-resolution maps from electron microscopy. , 1999, Journal of structural biology.
[12] N. Volkmann,et al. Quantitative fitting of atomic models into observed densities derived by electron microscopy. , 1999, Journal of structural biology.
[13] W. Baumeister,et al. The 26S proteasome: a molecular machine designed for controlled proteolysis. , 1999, Annual review of biochemistry.
[14] David C. Jones,et al. GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences. , 1999, Journal of molecular biology.
[15] A. Sali,et al. Comparative protein structure modeling of genes and genomes. , 2000, Annual review of biophysics and biomolecular structure.
[16] Ronald D. Vale,et al. Aaa Proteins , 2000, The Journal of cell biology.
[17] W Chiu,et al. Fourier amplitude decay of electron cryomicroscopic images of single particles and effects on structure determination. , 2001, Journal of structural biology.
[18] T L Blundell,et al. FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties. , 2001, Journal of molecular biology.
[19] M. Baker,et al. Bridging the information gap: computational tools for intermediate resolution structure interpretation. , 2001, Journal of molecular biology.
[20] W Wriggers,et al. Modeling tricks and fitting techniques for multiresolution structures. , 2001, Structure.
[21] G. Pruijn,et al. Protein-protein interactions between human exosome components support the assembly of RNase PH-type subunits into a six-membered PNPase-like ring. , 2002, Journal of molecular biology.
[22] J. Berg,et al. Molecular dynamics simulations of biomolecules , 2002, Nature Structural Biology.
[23] H. Towbin. Towbin H, Staehelin T & Gordon J. Electrophoretic transfer of proteins frompolyacrylatnide gels to nitrocellulose sheets: procedure and some applications. Proc. Nat. Acad. Sd. USA 76:4350-4. 1979 , 2002 .
[24] R. Russell,et al. Potential artefacts in protein‐interaction networks , 2002, FEBS letters.
[25] Peer Bork,et al. A complex prediction: three‐dimensional model of the yeast exosome , 2002, EMBO reports.
[26] Patrick Aloy,et al. Interrogating protein interaction networks through structural biology , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[27] A. Sinz. Chemical cross-linking and mass spectrometry for mapping three-dimensional structures of proteins and protein complexes. , 2003, Journal of mass spectrometry : JMS.
[28] R. Henderson,et al. Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy. , 2003, Journal of molecular biology.
[29] Wolfgang Baumeister,et al. Three-Dimensional Structure of Herpes Simplex Virus from Cryo-Electron Tomography , 2003, Science.
[30] Andrei N Lupas,et al. Phylogenetic analysis of AAA proteins. , 2004, Journal of structural biology.
[31] Conrad C. Huang,et al. UCSF Chimera—A visualization system for exploratory research and analysis , 2004, J. Comput. Chem..
[32] R. Baierlein. Probability Theory: The Logic of Science , 2004 .
[33] E. Conti,et al. The archaeal exosome core is a hexameric ring structure with three catalytic subunits , 2005, Nature Structural &Molecular Biology.
[34] S. Fields. High‐throughput two‐hybrid analysis , 2005, The FEBS journal.
[35] Johannes Söding,et al. The HHpred interactive server for protein homology detection and structure prediction , 2005, Nucleic Acids Res..
[36] M. Baker,et al. Structural characterization of components of protein assemblies by comparative modeling and electron cryo-microscopy. , 2005, Journal of structural biology.
[37] M. S. Chapman,et al. Fitting of high-resolution structures into electron microscopy reconstruction images. , 2005, Structure.
[38] Johannes Söding,et al. Protein homology detection by HMM?CHMM comparison , 2005, Bioinform..
[39] F. Förster,et al. Retrovirus envelope protein complex structure in situ studied by cryo-electron tomography. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[40] O. Schueler‐Furman,et al. Progress in Modeling of Protein Structures and Interactions , 2005, Science.
[41] Johannes Söding,et al. The MPI Bioinformatics Toolkit for protein sequence analysis , 2006, Nucleic Acids Res..
[42] Ben M. Webb,et al. Comparative Protein Structure Modeling Using Modeller , 2006, Current protocols in bioinformatics.
[43] Michael Nilges,et al. Weighting of experimental evidence in macromolecular structure determination. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[44] Karsten Suhre,et al. NORMA: a tool for flexible fitting of high-resolution protein structures into low-resolution electron-microscopy-derived density maps. , 2006, Acta crystallographica. Section D, Biological crystallography.
[45] Quansheng Liu,et al. Reconstitution, Activities, and Structure of the Eukaryotic RNA Exosome , 2006, Cell.
[46] Interaction-site prediction for protein complexes: a critical assessment , 2007, Bioinform..
[47] B. Chait,et al. Determining the architectures of macromolecular assemblies , 2007, Nature.
[48] C. Robinson,et al. The role of mass spectrometry in structure elucidation of dynamic protein complexes. , 2007, Annual review of biochemistry.
[49] Juri Rappsilber,et al. Structural Analysis of Multiprotein Complexes by Cross-linking, Mass Spectrometry, and Database Searching*S , 2007, Molecular & Cellular Proteomics.
[50] Conrad C. Huang,et al. Visualizing density maps with UCSF Chimera. , 2007, Journal of structural biology.
[51] Friedrich Förster,et al. Structure determination in situ by averaging of tomograms. , 2007, Methods in cell biology.
[52] A. Sali,et al. Comparative Modeling of Drug Target Proteins , 2007, Comprehensive Medicinal Chemistry II.
[53] Shigeyuki Yokoyama,et al. Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors. , 2007, Molecular cell.
[54] Frank Alber,et al. Integrating diverse data for structure determination of macromolecular assemblies. , 2008, Annual review of biochemistry.
[55] Leonardo G. Trabuco,et al. Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics. , 2008, Structure.
[56] Structure of Monomeric Yeast and Mammalian Sec61 Complexes Interacting with the Translating Ribosome , 2009, Science.
[57] F. Striebel,et al. Controlled destruction: AAA+ ATPases in protein degradation from bacteria to eukaryotes. , 2009, Current opinion in structural biology.
[58] A. Sali,et al. An atomic model AAA-ATPase/20S core particle sub-complex of the 26S proteasome. , 2009, Biochemical and biophysical research communications.
[59] D. Baker,et al. Refinement of protein structures into low-resolution density maps using rosetta. , 2009, Journal of molecular biology.
[60] Yigong Shi,et al. Structural insights into the regulatory particle of the proteasome from Methanocaldococcus jannaschii. , 2009, Molecular cell.
[61] Friedrich Förster,et al. Insights into the molecular architecture of the 26S proteasome , 2009, Proceedings of the National Academy of Sciences.
[62] Klaus Schulten,et al. Structural Insight into Nascent Polypeptide Chain–Mediated Translational Stalling , 2009, Science.
[63] J. Whittle,et al. The nuclear pore complex has entered the atomic age. , 2009, Structure.
[64] M. Habeck,et al. Structure and activity of the N-terminal substrate recognition domains in proteasomal ATPases. , 2009, Molecular cell.
[65] R. Aebersold,et al. Probing Native Protein Structures by Chemical Cross-linking, Mass Spectrometry, and Bioinformatics , 2010, Molecular & Cellular Proteomics.
[66] Ben M. Webb,et al. Integrative Structure Modeling of Macromolecular Assemblies from Proteomics Data* , 2010, Molecular & Cellular Proteomics.
[67] Andrej Sali,et al. Integrating Diverse Data For Structure Determination of Macromolecular Assemblies , 2010 .
[68] Yifan Cheng,et al. Interactions of PAN's C‐termini with archaeal 20S proteasome and implications for the eukaryotic proteasome–ATPase interactions , 2010, The EMBO journal.
[69] A. Sali,et al. Toward an Integrated Structural Model of the 26S Proteasome* , 2010, Molecular & Cellular Proteomics.
[70] Jimin Wang,et al. Heterohexameric ring arrangement of the eukaryotic proteasomal ATPases: implications for proteasome structure and assembly. , 2010, Molecular cell.