SiteEngines: recognition and comparison of binding sites and protein–protein interfaces
暂无分享,去创建一个
Ruth Nussinov | Haim J. Wolfson | Alexandra Shulman-Peleg | H. Wolfson | R. Nussinov | A. Shulman-Peleg
[1] M. Jambon,et al. A new bioinformatic approach to detect common 3D sites in protein structures , 2003, Proteins.
[2] J M Thornton,et al. Derivation of 3D coordinate templates for searching structural databases: Application to ser‐His‐Asp catalytic triads in the serine proteinases and lipases , 1996, Protein science : a publication of the Protein Society.
[3] Peter Willett,et al. Searching for Patterns of Amino Acids in 3D Protein Structures , 2003, J. Chem. Inf. Comput. Sci..
[4] C. Orengo,et al. One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions. , 2002, Journal of molecular biology.
[5] Ruth Nussinov,et al. Protein-Protein Interfaces: Recognition of Similar Spatial and Chemical Organizations , 2004, WABI.
[6] H. Wolfson,et al. From structure to function: methods and applications. , 2005, Current protein & peptide science.
[7] M. L. Connolly. Analytical molecular surface calculation , 1983 .
[8] C. Chothia,et al. The atomic structure of protein-protein recognition sites. , 1999, Journal of molecular biology.
[9] Jie Liang,et al. Inferring functional relationships of proteins from local sequence and spatial surface patterns. , 2003, Journal of molecular biology.
[10] K. Denessiouk,et al. Adenine recognition: A motif present in ATP‐, CoA‐, NAD‐, NADP‐, and FAD‐dependent proteins , 2001, Proteins.
[11] K. Kinoshita,et al. Identification of protein biochemical functions by similarity search using the molecular surface database eF‐site , 2003, Protein science : a publication of the Protein Society.
[12] R. Russell,et al. Detection of protein three-dimensional side-chain patterns: new examples of convergent evolution. , 1998, Journal of molecular biology.
[13] Ruth Nussinov,et al. Generation and analysis of a protein–protein interface data set with similar chemical and spatial patterns of interactions , 2005, Proteins.
[14] J. Thornton,et al. Protein–protein interfaces: Analysis of amino acid conservation in homodimers , 2001, Proteins.
[15] K. Kinoshita,et al. Identification of the ligand binding sites on the molecular surface of proteins , 2005, Protein science : a publication of the Protein Society.
[16] P. Willett,et al. A graph-theoretic approach to the identification of three-dimensional patterns of amino acid side-chains in protein structures. , 1994, Journal of molecular biology.
[17] G. Klebe,et al. A new method to detect related function among proteins independent of sequence and fold homology. , 2002, Journal of molecular biology.
[18] Annabel E. Todd,et al. Evolution of function in protein superfamilies, from a structural perspective. , 2001, Journal of molecular biology.
[19] J. Thornton,et al. Protein recognition of adenylate: an example of a fuzzy recognition template. , 1996, Journal of molecular biology.
[20] H. Wolfson,et al. Recognition of Functional Sites in Protein Structures☆ , 2004, Journal of Molecular Biology.
[21] Janet M. Thornton,et al. An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis , 2003, Bioinform..