Pathways at Work: Metabolic Flux Analysis of the Industrial Cell Factory Corynebacterium glutamicum

Since its discovery in the 1950s, the Gram-positive soil bacterium Corynebacterium glutamicum has turned into a biotechnological work horse. It is applied worldwide for the production of various products, including 2.5 million t/a glutamate and 1.5 million t/a lysine for the food and feed industry. From early on, the industrial demand for these amino acids strongly stimulated the creation of efficient production strains, including development of progressive techniques that allow strain optimization. With the invention of recombinant DNA technology, a targeted genetic optimization of C. glutamicum became possible. The major challenge toward successful improvement is still the prediction of beneficial optimization targets requiring detailed understanding of the underlying pathways. Hereby, metabolic flux analysis emerged as most valuable technique. Today, powerful state-of-the-art technologies available enable the study of fluxes on various levels, including screening at microliter-scale, routine strain profiling at laboratory scale, or analysis of large-scale production processes. As shown here, flux analysis has provided deep insights into the physiology of Corynebacterium glutamicum, probably the best studied microorganism on the level of metabolic fluxes today.

[1]  L. Quek,et al.  OpenFLUX: efficient modelling software for 13C-based metabolic flux analysis , 2009, Microbial cell factories.

[2]  Masayuki Inui,et al.  Metabolic Engineering of Corynebacterium glutamicum for Fuel Ethanol Production under Oxygen-Deprivation Conditions , 2005, Journal of Molecular Microbiology and Biotechnology.

[3]  Bas Teusink,et al.  Basic concepts and principles of stoichiometric modeling of metabolic networks , 2013, Biotechnology journal.

[4]  Volker F. Wendisch,et al.  Biotechnological production of polyamines by Bacteria: recent achievements and future perspectives , 2011, Applied Microbiology and Biotechnology.

[5]  U. Sauer,et al.  Metabolic fluxes in riboflavin-producing Bacillus subtilis , 1997, Nature Biotechnology.

[6]  Volker F. Wendisch,et al.  Corynebacterium glutamicum Tailored for Efficient Isobutanol Production , 2011, Applied and Environmental Microbiology.

[7]  C. Wittmann,et al.  Systems-wide metabolic pathway engineering in Corynebacterium glutamicum for bio-based production of diaminopentane. , 2010, Metabolic engineering.

[8]  J. Krömer,et al.  Fluxomics - connecting 'omics analysis and phenotypes. , 2013, Environmental microbiology.

[9]  W. Wiechert,et al.  In Vivo Quantification of Parallel and Bidirectional Fluxes in the Anaplerosis of Corynebacterium glutamicum * , 2000, The Journal of Biological Chemistry.

[10]  J. Nielsen,et al.  Mass spectrometry in metabolome analysis. , 2005, Mass spectrometry reviews.

[11]  U. Sauer,et al.  GC‐MS Analysis of Amino Acids Rapidly Provides Rich Information for Isotopomer Balancing , 2000, Biotechnology progress.

[12]  Christoph Wittmann,et al.  Amplified Expression of Fructose 1,6-Bisphosphatase in Corynebacterium glutamicum Increases In Vivo Flux through the Pentose Phosphate Pathway and Lysine Production on Different Carbon Sources , 2005, Applied and Environmental Microbiology.

[13]  S. Ishino,et al.  13C NMR studies of histidine fermentation with a Corynebacterium glutamicum mutant , 1986 .

[14]  C. Wittmann,et al.  Physiological response of Corynebacterium glutamicum to oxidative stress induced by deletion of the transcriptional repressor McbR. , 2008, Microbiology.

[15]  Christoph Wittmann,et al.  Respirometric 13C flux analysis--Part II: in vivo flux estimation of lysine-producing Corynebacterium glutamicum. , 2006, Metabolic engineering.

[16]  Christoph Wittmann,et al.  Metabolic engineering of Corynebacterium glutamicum for production of 1,5-diaminopentane from hemicellulose. , 2011, Biotechnology journal.

[17]  V. Kollman,et al.  13C nuclear magnetic resonance studies of the biosynthesis by Microbacterium ammoniaphilum of L-glutamate selectively enriched with carbon-13. , 1982, The Journal of biological chemistry.

[18]  C. Wittmann,et al.  Investigation of the central carbon metabolism of Sorangium cellulosum: metabolic network reconstruction and quantification of pathway fluxes. , 2009, Journal of microbiology and biotechnology.

[19]  C. Wittmann,et al.  In-Depth Profiling of Lysine-Producing Corynebacterium glutamicum by Combined Analysis of the Transcriptome, Metabolome, and Fluxome , 2004, Journal of bacteriology.

[20]  J. Ohnishi,et al.  A novel methodology employing Corynebacterium glutamicum genome information to generate a new L-lysine-producing mutant , 2001, Applied Microbiology and Biotechnology.

[21]  B. Eikmanns Central Metabolism: Tricarboxylic Acid Cycle and Anaplerotic Reactions , 2005 .

[22]  S. Noack,et al.  Comparative 13C Metabolic Flux Analysis of Pyruvate Dehydrogenase Complex-Deficient, l-Valine-Producing Corynebacterium glutamicum , 2011, Applied and Environmental Microbiology.

[23]  A. Demain,et al.  Glucose-6-Phosphate Dehydrogenase and Its Deficiency in Mutants of Corynebacterium glutamicum , 1969, Journal of bacteriology.

[24]  Christoph Wittmann,et al.  Metabolic engineering of cellular transport for overproduction of the platform chemical 1,5-diaminopentane in Corynebacterium glutamicum. , 2011, Metabolic engineering.

[25]  V. Wendisch,et al.  Putrescine production by engineered Corynebacterium glutamicum , 2010, Applied Microbiology and Biotechnology.

[26]  A. D. de Graaf,et al.  Quantitative Determination of Metabolic Fluxes during Coutilization of Two Carbon Sources: Comparative Analyses withCorynebacterium glutamicum during Growth on Acetate and/or Glucose , 2000, Journal of bacteriology.

[27]  A. Neves,et al.  Carbon Flux Analysis by 13C Nuclear Magnetic Resonance To Determine the Effect of CO2 on Anaerobic Succinate Production by Corynebacterium glutamicum , 2014, Applied and Environmental Microbiology.

[28]  Chikara Furusawa,et al.  Effect of odhA overexpression and odhA antisense RNA expression on Tween-40-triggered glutamate production by Corynebacterium glutamicum , 2009, Applied Microbiology and Biotechnology.

[29]  Mikhail S Shupletsov,et al.  OpenFLUX2: 13C-MFA modeling software package adjusted for the comprehensive analysis of single and parallel labeling experiments , 2014, Microbial Cell Factories.

[30]  Michael Bott,et al.  Corynebacterial Protein Kinase G Controls 2-Oxoglutarate Dehydrogenase Activity via the Phosphorylation Status of the OdhI Protein* , 2006, Journal of Biological Chemistry.

[31]  T Szyperski,et al.  13C-NMR, MS and metabolic flux balancing in biotechnology research , 1998, Quarterly Reviews of Biophysics.

[32]  J. Kalinowski,et al.  Adaptation of Corynebacterium glutamicum to Ammonium Limitation: a Global Analysis Using Transcriptome and Proteome Techniques , 2005, Applied and Environmental Microbiology.

[33]  C. Wittmann,et al.  The Pyruvate-Tricarboxylic Acid Cycle Node , 2014, The Journal of Biological Chemistry.

[34]  Wolfgang Wiechert,et al.  Visual workflows for 13C-metabolic flux analysis , 2015, Bioinform..

[35]  M. Inui,et al.  Metabolic engineering for improved production of ethanol by Corynebacterium glutamicum , 2014, Applied Microbiology and Biotechnology.

[36]  C. Wittmann,et al.  Metabolic flux analysis using mass spectrometry. , 2002, Advances in biochemical engineering/biotechnology.

[37]  H. Sahm,et al.  Pyruvate carboxylase is a major bottleneck for glutamate and lysine production by Corynebacterium glutamicum. , 2001, Journal of molecular microbiology and biotechnology.

[38]  Christoph Wittmann,et al.  Metabolic flux engineering of L-lysine production in Corynebacterium glutamicum--over expression and modification of G6P dehydrogenase. , 2007, Journal of biotechnology.

[39]  Wolfgang Wiechert,et al.  13CFLUX2—high-performance software suite for 13C-metabolic flux analysis , 2012, Bioinform..

[40]  J. L. Zhang,et al.  HETEROLOGOUS EXPRESSION OF Escherichia coli FRUCTOSE-1,6-BISPHOSPHATASE IN Corynebacterium glutamicum AND EVALUATING THE EFFECT ON CELL GROWTH AND L-LYSINE PRODUCTION , 2014, Preparative biochemistry & biotechnology.

[41]  Akihiko Kondo,et al.  Disruption of pknG enhances production of gamma-aminobutyric acid by Corynebacterium glutamicum expressing glutamate decarboxylase , 2014, AMB Express.

[42]  K. Shimizu,et al.  Determination of metabolic flux changes during fed-batch cultivation from measurements of intracellular amino acids by LC-MS/MS. , 2007, Journal of biotechnology.

[43]  N. Lindley,et al.  Central Metabolism: Sugar Uptake and Conversion , 2005 .

[44]  Yinjie J. Tang,et al.  Recent advances in mapping environmental microbial metabolisms through 13C isotopic fingerprints , 2012, Journal of The Royal Society Interface.

[45]  C. Wittmann,et al.  From zero to hero - production of bio-based nylon from renewable resources using engineered Corynebacterium glutamicum. , 2014, Metabolic engineering.

[46]  A. Yokota,et al.  Metabolic changes in a pyruvate kinase gene deletion mutant of Corynebacterium glutamicum ATCC 13032. , 2010, Metabolic engineering.

[47]  W. Wiechert,et al.  13C NMR studies of the fluxes in the central metabolism of Corynebacterium glutamicum during growth and overproduction of amino acids in batch cultures , 1995, Applied Microbiology and Biotechnology.

[48]  R. Takors,et al.  Production process monitoring by serial mapping of microbial carbon flux distributions using a novel Sensor Reactor approach: II--(13)C-labeling-based metabolic flux analysis and L-lysine production. , 2003, Metabolic engineering.

[49]  Uwe Sauer,et al.  Molecular Basis for Anaerobic Growth of Saccharomyces cerevisiae on Xylose, Investigated by Global Gene Expression and Metabolic Flux Analysis , 2004, Applied and Environmental Microbiology.

[50]  M. Ikeda,et al.  The Corynebacterium glutamicum genome: features and impacts on biotechnological processes , 2003, Applied Microbiology and Biotechnology.

[51]  Jens Nielsen,et al.  Analysis of flux estimates based on (13)C-labelling experiments. , 2002, European journal of biochemistry.

[52]  Christoph Wittmann,et al.  Systems metabolic engineering of Corynebacterium glutamicum for production of the chemical chaperone ectoine , 2013, Microbial Cell Factories.

[53]  Christoph Wittmann,et al.  Increased lysine production by flux coupling of the tricarboxylic acid cycle and the lysine biosynthetic pathway--metabolic engineering of the availability of succinyl-CoA in Corynebacterium glutamicum. , 2013, Metabolic engineering.

[54]  Wolfgang Wiechert,et al.  Stationary versus non-stationary (13)C-MFA: a comparison using a consistent dataset. , 2011, Journal of biotechnology.

[55]  J. Heijnen,et al.  Metabolic-flux analysis of Saccharomyces cerevisiae CEN.PK113-7D based on mass isotopomer measurements of (13)C-labeled primary metabolites. , 2005, FEMS yeast research.

[56]  M. Bott,et al.  Glutamate production by Corynebacterium glutamicum: dependence on the oxoglutarate dehydrogenase inhibitor protein OdhI and protein kinase PknG , 2007, Applied Microbiology and Biotechnology.

[57]  Christoph Wittmann,et al.  Metabolic Fluxes in Corynebacterium glutamicum during Lysine Production with Sucrose as Carbon Source , 2004, Applied and Environmental Microbiology.

[58]  A. D. de Graaf,et al.  In Vivo Fluxes in the Ammonium-Assimilatory Pathways in Corynebacterium glutamicum Studied by15N Nuclear Magnetic Resonance , 1999, Applied and Environmental Microbiology.

[59]  R. Takors,et al.  Stimulation, Monitoring, and Analysis of Pathway Dynamics by Metabolic Profiling in the Aromatic Amino Acid Pathway , 2004, Biotechnology progress.

[60]  Christoph Wittmann,et al.  Towards methionine overproduction in Corynebacterium glutamicum--methanethiol and dimethyldisulfide as reduced sulfur sources. , 2010, Journal of microbiology and biotechnology.

[61]  Jean-Charles Portais,et al.  A novel platform for automated high-throughput fluxome profiling of metabolic variants. , 2014, Metabolic engineering.

[62]  Christoph Wittmann,et al.  Response of fluxome and metabolome to temperature-induced recombinant protein synthesis in Escherichia coli. , 2007, Journal of biotechnology.

[63]  C. Wittmann,et al.  Application of MALDI-TOF MS to lysine-producing Corynebacterium glutamicum: a novel approach for metabolic flux analysis. , 2001, European journal of biochemistry.

[64]  James C. Liao,et al.  Engineering Corynebacterium glutamicum for isobutanol production , 2010, Applied Microbiology and Biotechnology.

[65]  Uwe Sauer,et al.  The PEP-pyruvate-oxaloacetate node as the switch point for carbon flux distribution in bacteria. , 2005, FEMS microbiology reviews.

[66]  R. Takors,et al.  Production process monitoring by serial mapping of microbial carbon flux distributions using a novel sensor reactor approach: I--Sensor reactor system. , 2003, Metabolic engineering.

[67]  W Wiechert,et al.  Bidirectional reaction steps in metabolic networks: IV. Optimal design of isotopomer labeling experiments. , 1999, Biotechnology and bioengineering.

[68]  Ute Roessner,et al.  Simultaneous analysis of metabolites in potato tuber by gas chromatography-mass spectrometry. , 2000 .

[69]  M. Baucher,et al.  Cloning of the Malic Enzyme Gene fromCorynebacterium glutamicum and Role of the Enzyme in Lactate Metabolism , 2000, Applied and Environmental Microbiology.

[70]  C. Wittmann,et al.  Respirometric 13C flux analysis, Part I: design, construction and validation of a novel multiple reactor system using on-line membrane inlet mass spectrometry. , 2006, Metabolic engineering.

[71]  Christoph Wittmann,et al.  Metabolic responses to pyruvate kinase deletion in lysine producing Corynebacterium glutamicum , 2008, Microbial cell factories.

[72]  V. Wendisch Amino acid biosynthesis : pathways, regulation and metabolic engineering , 2007 .

[73]  J K Kelleher,et al.  Flux estimation using isotopic tracers: common ground for metabolic physiology and metabolic engineering. , 2001, Metabolic engineering.

[74]  Christoph Wittmann,et al.  Fluxome analysis using GC-MS , 2007, Microbial cell factories.

[75]  L. Eggeling,et al.  Handbook of Corynebacterium glutamicum , 2005 .

[76]  C. Wittmann,et al.  GC-MS-based ¹³C metabolic flux analysis. , 2014, Methods in molecular biology.

[77]  Takashi Hirasawa,et al.  Distinct roles of two anaplerotic pathways in glutamate production induced by biotin limitation in Corynebacterium glutamicum. , 2008, Journal of bioscience and bioengineering.

[78]  Gregory Stephanopoulos,et al.  Carbon Flux Distributions at the Glucose 6‐Phosphate Branch Point in Corynebacterium glutamicum during Lysine Overproduction , 1994 .

[79]  C. Wittmann,et al.  Core Fluxome and Metafluxome of Lactic Acid Bacteria under Simulated Cocoa Pulp Fermentation Conditions , 2013, Applied and Environmental Microbiology.

[80]  Christoph Wittmann,et al.  Metabolic fluxes and beyond—systems biology understanding and engineering of microbial metabolism , 2010, Applied Microbiology and Biotechnology.

[81]  C. Wittmann,et al.  Robustness and Plasticity of Metabolic Pathway Flux among Uropathogenic Isolates of Pseudomonas aeruginosa , 2014, PloS one.

[82]  Suteaki Shioya,et al.  Study on roles of anaplerotic pathways in glutamate overproduction of Corynebacterium glutamicum by metabolic flux analysis , 2007, Microbial cell factories.

[83]  H Sahm,et al.  Metabolic consequences of altered phosphoenolpyruvate carboxykinase activity in Corynebacterium glutamicum reveal anaplerotic regulation mechanisms in vivo. , 2001, Metabolic engineering.

[84]  M. Cocaign-Bousquet,et al.  Carbon-flux distribution in the central metabolic pathways of Corynebacterium glutamicum during growth on fructose. , 1998, European journal of biochemistry.

[85]  Jianzhong Xu,et al.  Improvement of cell growth and l-lysine production by genetically modified Corynebacterium glutamicum during growth on molasses , 2013, Journal of Industrial Microbiology & Biotechnology.

[86]  U. Sauer,et al.  High-throughput metabolic flux analysis based on gas chromatography-mass spectrometry derived 13C constraints. , 2004, Analytical biochemistry.

[87]  Bastian Blombach,et al.  Engineering Corynebacterium glutamicum for the production of pyruvate , 2012, Applied Microbiology and Biotechnology.

[88]  Jean-Charles Portais,et al.  Application of 2D-TOCSY NMR to the measurement of specific(13C-enrichments in complex mixtures of 13C-labeled metabolites. , 2007, Metabolic engineering.

[89]  H Sahm,et al.  Determination of full 13C isotopomer distributions for metabolic flux analysis using heteronuclear spin echo difference NMR spectroscopy. , 2000, Journal of biotechnology.

[90]  U. Sauer,et al.  Article number: 62 REVIEW Metabolic networks in motion: 13 C-based flux analysis , 2022 .

[91]  K. Miwa,et al.  Amplification of the Phosphoenol Pyruvate Carboxylase Gene of Brevibacterium lactofermentum to Improve Amino Acid Production , 1987 .

[92]  W Wiechert,et al.  A universal framework for 13C metabolic flux analysis. , 2001, Metabolic engineering.

[93]  J. Nielsen,et al.  In silico genome‐scale reconstruction and validation of the Corynebacterium glutamicum metabolic network , 2009, Biotechnology and bioengineering.

[94]  H. Shimizu,et al.  Precise metabolic flux analysis of coryneform bacteria by gas chromatography-mass spectrometry and verification by nuclear magnetic resonance. , 2006, Journal of bioscience and bioengineering.

[95]  C. Wittmann,et al.  Response of the central metabolism of Escherichia coli to modified expression of the gene encoding the glucose‐6‐phosphate dehydrogenase , 2007, FEBS letters.

[96]  Jean-Charles Portais,et al.  Determination of carbon labeling distribution of intracellular metabolites from single fragment ions by ion chromatography tandem mass spectrometry. , 2007, Analytical biochemistry.

[97]  A. Zeng,et al.  Deregulation of Feedback Inhibition of Phosphoenolpyruvate Carboxylase for Improved Lysine Production in Corynebacterium glutamicum , 2013, Applied and Environmental Microbiology.

[98]  Shuangjiang Liu,et al.  Identification and Characterization of γ-Aminobutyric Acid Uptake System GabP Cg (NCgl0464) in Corynebacterium glutamicum , 2012, Applied and Environmental Microbiology.

[99]  A. D. de Graaf,et al.  Flux partitioning in the split pathway of lysine synthesis in Corynebacterium glutamicum. Quantification by 13C- and 1H-NMR spectroscopy. , 1993, European journal of biochemistry.

[100]  R. Heinrich,et al.  Metabolic Pathway Analysis: Basic Concepts and Scientific Applications in the Post‐genomic Era , 1999, Biotechnology progress.

[101]  Isamu Shiio,et al.  Effect of Pyruvate Kinase Deficiency on L-Lysine Productivities of Mutants with Feedback-resistant Aspartokinases , 1987 .

[102]  J Villadsen,et al.  Quantification of intracellular metabolic fluxes from fractional enrichment and 13C-13C coupling constraints on the isotopomer distribution in labeled biomass components. , 1999, Metabolic engineering.

[103]  K. Hyung-Min,et al.  Deregulation of aspartokinase by single nucleotide exchange leads to global flux rearrangement in the central metabolism of Corynebacterium glutamicum , 2006 .

[104]  B. Palsson The challenges of in silico biology , 2000, Nature Biotechnology.

[105]  C. Wittmann,et al.  Systems metabolic engineering of xylose-utilizing Corynebacterium glutamicum for production of 1,5-diaminopentane. , 2013, Biotechnology journal.

[106]  Takashi Hirasawa,et al.  Requirement of de novo synthesis of the OdhI protein in penicillin-induced glutamate production by Corynebacterium glutamicum , 2010, Applied Microbiology and Biotechnology.

[107]  C. Wittmann,et al.  From zero to hero--design-based systems metabolic engineering of Corynebacterium glutamicum for L-lysine production. , 2011, Metabolic engineering.

[108]  E. Heinzle,et al.  Mass spectrometry for metabolic flux analysis. , 1999, Biotechnology and bioengineering.

[109]  R Takors,et al.  Serial flux mapping of Corynebacterium glutamicum during fed‐batch L‐lysine production using the sensor reactor approach , 2004, Biotechnology and bioengineering.

[110]  Masato Ikeda,et al.  A novel gnd mutation leading to increased L-lysine production in Corynebacterium glutamicum. , 2005, FEMS microbiology letters.

[111]  Christoph Wittmann,et al.  Bio-based production of the platform chemical 1,5-diaminopentane , 2011, Applied Microbiology and Biotechnology.

[112]  Jean-Charles Portais,et al.  IsoDesign: a software for optimizing the design of 13C-metabolic flux analysis experiments. , 2014, Biotechnology and bioengineering.

[113]  Masayuki Inui,et al.  Strain optimization for efficient isobutanol production using Corynebacterium glutamicum under oxygen deprivation , 2013, Biotechnology and bioengineering.

[114]  Marco Oldiges,et al.  Effect of pyruvate dehydrogenase complex deficiency on l-lysine production with Corynebacterium glutamicum , 2007, Applied Microbiology and Biotechnology.

[115]  Christoph Wittmann,et al.  Systems level engineering of Corynebacterium glutamicum – Reprogramming translational efficiency for superior production , 2010 .

[116]  W. Wiechert,et al.  Bidirectional reaction steps in metabolic networks: I. Modeling and simulation of carbon isotope labeling experiments. , 1997, Biotechnology and bioengineering.

[117]  H Sahm,et al.  Determination of the fluxes in the central metabolism of Corynebacterium glutamicum by nuclear magnetic resonance spectroscopy combined with metabolite balancing , 1996, Biotechnology and bioengineering.

[118]  H. Sahm,et al.  Roles of pyruvate kinase and malic enzyme in Corynebacterium glutamicum for growth on carbon sources requiring gluconeogenesis , 2004, Archives of Microbiology.

[119]  C. Wittmann,et al.  Modeling and experimental design for metabolic flux analysis of lysine-producing Corynebacteria by mass spectrometry. , 2001, Metabolic engineering.

[120]  M. Ikeda Amino acid production processes. , 2003, Advances in biochemical engineering/biotechnology.

[121]  Fast spatially encoded 3D NMR strategies for (13)C-based metabolic flux analysis. , 2013, Analytical chemistry.

[122]  N. Lindley,et al.  Modified carbon flux during oxygen limited growth of Corynebacterium glutamicum and the consequences for amino acid overproduction , 1993, Biotechnology Letters.

[123]  V. Wendisch,et al.  Pathway identification combining metabolic flux and functional genomics analyses: acetate and propionate activation by Corynebacterium glutamicum. , 2009, Journal of biotechnology.

[124]  Christoph Wittmann,et al.  Accumulation of Homolanthionine and Activation of a Novel Pathway for Isoleucine Biosynthesis in Corynebacterium glutamicum McbR Deletion Strains , 2006, Journal of bacteriology.

[125]  Elmar Heinzle,et al.  13C metabolic flux analysis for larger scale cultivation using gas chromatography-combustion-isotope ratio mass spectrometry. , 2010, Metabolic engineering.

[126]  C. Wittmann,et al.  The l -Lysine Story: From Metabolic Pathways to Industrial Production , 2007 .

[127]  D. Schomburg,et al.  combination of metabolome and transcriptome analyses reveals new targets f the Corynebacterium glutamicum nitrogen regulator AmtR , 2009 .

[128]  B. Christensen,et al.  Isotopomer analysis using GC-MS. , 1999, Metabolic engineering.

[129]  Roland Ulber,et al.  Production of L-lysine on different silage juices using genetically engineered Corynebacterium glutamicum. , 2013, Journal of biotechnology.

[130]  E. Kimura,et al.  Altered Metabolic Flux due to Deletion of odhA causes l-Glutamate Overproduction in Corynebacterium glutamicum , 2006, Applied and Environmental Microbiology.

[131]  C. Wittmann,et al.  Bmc Microbiology , 2004 .

[132]  A. Zeng,et al.  A de novo NADPH generation pathway for improving lysine production of Corynebacterium glutamicum by rational design of the coenzyme specificity of glyceraldehyde 3-phosphate dehydrogenase. , 2014, Metabolic engineering.

[133]  A. D. de Graaf,et al.  Response of the central metabolism of Corynebacterium glutamicum to different flux burdens. , 1997, Biotechnology and bioengineering.

[134]  Stephan Hans,et al.  Metabolic phenotype of phosphoglucose isomerase mutants of Corynebacterium glutamicum. , 2003, Journal of biotechnology.

[135]  Christoph Wittmann,et al.  Comparative Metabolic Flux Analysis of Lysine-Producing Corynebacterium glutamicum Cultured on Glucose or Fructose , 2004, Applied and Environmental Microbiology.

[136]  M. Inui,et al.  Comparative analysis of the Corynebacterium glutamicum group and complete genome sequence of strain R. , 2007, Microbiology.

[137]  Ralf Takors,et al.  Platform Engineering of Corynebacterium glutamicum with Reduced Pyruvate Dehydrogenase Complex Activity for Improved Production of l-Lysine, l-Valine, and 2-Ketoisovalerate , 2013, Applied and Environmental Microbiology.

[138]  Christoph Wittmann,et al.  Theoretical aspects of 13C metabolic flux analysis with sole quantification of carbon dioxide labeling , 2005, Comput. Biol. Chem..

[139]  Christoph Wittmann,et al.  Metabolic network analysis of lysine producing Corynebacterium glutamicum at a miniaturized scale , 2004, Biotechnology and bioengineering.

[140]  Stephan Noack,et al.  Improved L‐lysine production with Corynebacterium glutamicum and systemic insight into citrate synthase flux and activity , 2012, Biotechnology and bioengineering.

[141]  H Sahm,et al.  Response of the central metabolism in Corynebacterium glutamicum to the use of an NADH-dependent glutamate dehydrogenase. , 1999, Metabolic engineering.

[142]  M. Adams,et al.  Simultaneous analysis of amino and organic acids in extracts of plant leaves as tert-butyldimethylsilyl derivatives by capillary gas chromatography. , 1998, Analytical biochemistry.

[143]  C. Wittmann,et al.  The Key to Acetate: Metabolic Fluxes of Acetic Acid Bacteria under Cocoa Pulp Fermentation-Simulating Conditions , 2014, Applied and Environmental Microbiology.

[144]  H Sahm,et al.  Kinetic properties of the glucose-6-phosphate and 6-phosphogluconate dehydrogenases from Corynebacterium glutamicum and their application for predicting pentose phosphate pathway flux in vivo. , 2000, European journal of biochemistry.

[145]  Christoph Wittmann,et al.  In vivo analysis of intracellular amino acid labelings by GC/MS. , 2002, Analytical biochemistry.

[146]  M. Hecker,et al.  Adaptation of Bacillus subtilis carbon core metabolism to simultaneous nutrient limitation and osmotic challenge: a multi-omics perspective. , 2014, Environmental microbiology.

[147]  A. Goesmann,et al.  The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins. , 2003, Journal of biotechnology.

[148]  Christoph Wittmann,et al.  Metabolic Engineering of the Tricarboxylic Acid Cycle for Improved Lysine Production by Corynebacterium glutamicum , 2009, Applied and Environmental Microbiology.

[149]  Wolfgang Wiechert,et al.  Collisional fragmentation of central carbon metabolites in LC‐MS/MS increases precision of 13C metabolic flux analysis , 2012, Biotechnology and bioengineering.

[150]  M. Dauner From fluxes and isotope labeling patterns towards in silico cells. , 2010, Current opinion in biotechnology.

[151]  H. Sahm,et al.  Different Modes of Diaminopimelate Synthesis and Their Role in Cell Wall Integrity: a Study withCorynebacterium glutamicum , 1998, Journal of bacteriology.

[152]  H. Yang,et al.  A highly specific monomeric isocitrate dehydrogenase from Corynebacterium glutamicum. , 2000, Archives of Biochemistry and Biophysics.

[153]  Christoph Wittmann,et al.  Genealogy Profiling through Strain Improvement by Using Metabolic Network Analysis: Metabolic Flux Genealogy of Several Generations of Lysine-Producing Corynebacteria , 2002, Applied and Environmental Microbiology.

[154]  E. Agosin,et al.  Metabolic flux redistribution in Corynebacterium glutamicum in response to osmotic stress , 2002, Applied Microbiology and Biotechnology.

[155]  Christoph Wittmann,et al.  Analysis and engineering of metabolic pathway fluxes in Corynebacterium glutamicum. , 2010, Advances in biochemical engineering/biotechnology.

[156]  Muriel Cocaign-Bousquet,et al.  Pyruvate overflow and carbon flux within the central metabolic pathways of Corynebacterium glutamicum during growth on lactate , 1995 .

[157]  Takashi Gojobori,et al.  Comparative study of flux redistribution of metabolic pathway in glutamate production by two coryneform bacteria. , 2005, Metabolic engineering.

[158]  H. Shimizu,et al.  Effects of the changes in enzyme activities on metabolic flux redistribution around the 2-oxoglutarate branch in glutamate production by Corynebacterium glutamicum , 2003, Bioprocess and biosystems engineering.

[159]  M. Inui,et al.  Metabolic Analysis of Corynebacterium glutamicum during Lactate and Succinate Productions under Oxygen Deprivation Conditions , 2004, Journal of Molecular Microbiology and Biotechnology.

[160]  G. Stephanopoulos,et al.  Metabolic flux distributions in Corynebacterium glutamicum during growth and lysine overproduction , 2000, Biotechnology and bioengineering.

[161]  Christoph Wittmann,et al.  Systems and synthetic metabolic engineering for amino acid production - the heartbeat of industrial strain development. , 2012, Current opinion in biotechnology.

[162]  C. Wittmann,et al.  Metabolic Flux Analysis in Corynebacterium glutamicum , 2005 .

[163]  M. Cocaign-Bousquet,et al.  Growth Rate-Dependent Modulation of Carbon Flux through Central Metabolism and the Kinetic Consequences for Glucose-Limited Chemostat Cultures of Corynebacterium glutamicum , 1996, Applied and environmental microbiology.

[164]  Chikara Furusawa,et al.  Development and experimental verification of a genome-scale metabolic model for Corynebacterium glutamicum , 2009, Microbial cell factories.

[165]  Christoph Wittmann,et al.  Flux Design: In silico design of cell factories based on correlation of pathway fluxes to desired properties , 2009, BMC Systems Biology.

[166]  C. Wittmann,et al.  Influence of glucose, fructose and sucrose as carbon sources on kinetics and stoichiometry of lysine production by Corynebacterium glutamicum , 2002, Journal of Industrial Microbiology and Biotechnology.

[167]  H Sahm,et al.  Metabolic engineering for L-lysine production by Corynebacterium glutamicum. , 2001, Advances in biochemical engineering/biotechnology.

[168]  C. Wittmann,et al.  Measurement of isotopic enrichments in 13C-labelled molecules by 1D selective Zero-Quantum Filtered TOCSY NMR experiments , 2008 .

[169]  Shuichi Aiba,et al.  Identification of metabolic model: Citrate production from glucose by Candida lipolytica , 1979 .

[170]  S. Ishino,et al.  Involvement of meso-.ALPHA.,.EPSILON.-diaminopimelate D-dehydrogenase in lysine biosynthesis in Corynebacterium glutamicum. , 1984 .