Unique amino acid composition of proteins in halophilic bacteria.
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Satoshi Fukuchi | K. Nishikawa | S. Fukuchi | K. Yoshimune | M. Wakayama | M. Moriguchi | Ken Nishikawa | Kazuaki Yoshimune | Mamoru Wakayama | Mitsuaki Moriguchi
[1] S. Karlin,et al. Dinucleotide relative abundance extremes: a genomic signature. , 1995, Trends in genetics : TIG.
[2] G. Böhm,et al. Relevance of sequence statistics for the properties of extremophilic proteins. , 2009, International journal of peptide and protein research.
[3] G. Church,et al. Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics , 1997, Journal of bacteriology.
[4] Y. Kawarabayasi,et al. Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon, Aeropyrum pernix K1. , 1999, DNA research : an international journal for rapid publication of reports on genes and genomes.
[5] G. Zaccai,et al. Functional implications related to the gene structure of the elongation factor EF-Tu from Halobacterium marismortui. , 1990, Nucleic acids research.
[6] K Nishikawa,et al. Genes from nine genomes are separated into their organisms in the dinucleotide composition space. , 1998, DNA research : an international journal for rapid publication of reports on genes and genomes.
[7] J A McCammon,et al. Electrostatic contributions to the stability of halophilic proteins. , 1998, Journal of molecular biology.
[8] Kevin L. Shaw,et al. Increasing protein stability by altering long‐range coulombic interactions , 1999, Protein science : a publication of the Protein Society.
[9] J. Langowski,et al. Solution studies of elongation factor Tu from the extreme halophile Halobacterium marismortui. , 1992, Journal of molecular biology.
[10] Shigeki Mitaku,et al. SOSUI: classification and secondary structure prediction system for membrane proteins , 1998, Bioinform..
[11] K Nishikawa,et al. Discrimination of intracellular and extracellular proteins using amino acid composition and residue-pair frequencies. , 1994, Journal of molecular biology.
[12] Elliot J. Lefkowitz,et al. Genome of the Bacterium Streptococcus pneumoniae Strain R6 , 2001, Journal of bacteriology.
[13] J. Sussman,et al. Erratum: Insights into protein adaptation to a saturated salt environment from the crystal structure of a halophilic 2Fe-2S ferredoxin (Nature Structural Biology (1996) 3:5 (452-458)) , 1996 .
[14] D. Madern,et al. Mutation at a single acidic amino acid enhances the halophilic behaviour of malate dehydrogenase from Haloarcula marismortui in physiological salts. , 1995, European journal of biochemistry.
[15] R. Fleischmann,et al. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. , 1995, Science.
[16] H Nielsen,et al. Machine learning approaches for the prediction of signal peptides and other protein sorting signals. , 1999, Protein engineering.
[17] S. Salzberg,et al. Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima , 1999, Nature.
[18] D. Madern,et al. Stability against denaturation mechanisms in halophilic malate dehydrogenase "adapt" to solvent conditions. , 1994, Journal of molecular biology.
[19] Irwin D. Kuntz,et al. Hydration of macromolecules. III. Hydration of polypeptides , 1971 .
[20] Udo Heinemann,et al. Two exposed amino acid residues confer thermostability on a cold shock protein , 2000, Nature Structural Biology.
[21] A. Goffeau,et al. The complete genome sequence of the Gram-positive bacterium Bacillus subtilis , 1997, Nature.
[22] H. Eisenberg,et al. Stabilization of halophilic malate dehydrogenase. , 1989, Journal of molecular biology.
[23] G. Baldacci,et al. The gene for a halophilic glutamate dehydrogenase sequence, transcription analysis and phylogenetic implications , 1991, Molecular and General Genetics MGG.
[24] H. Eisenberg,et al. Biophysical study of halophilic malate dehydrogenase in solution: revised subunit structure and solvent interactions of native and recombinant enzyme , 1993 .
[25] Thomas L. Madden,et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.
[26] R. Huber,et al. The complete genome of the hyperthermophilic bacterium Aquifex aeolicus , 1998, Nature.
[27] J. Lanyi,et al. Salt-dependent properties of proteins from extremely halophilic bacteria. , 1974, Bacteriological reviews.
[28] L. Hood,et al. Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence. , 2001, Genome research.
[29] G. Böhm,et al. A structure-based model for the halophilic adaptation of dihydrofolate reductase from Halobacterium volcanii. , 1994, Protein engineering.
[30] J. Sussman,et al. Insights into protein adaptation to a saturated salt environment from the crystal structure of a halophilic 2Fe-2S ferredoxin , 1996, Nature Structural Biology.
[31] P. Argos,et al. Structural stability of halophilic proteins. , 1981, Biochemistry.
[32] M. Wakayama,et al. Overexpression of salt-tolerant glutaminase from Micrococcus luteus K-3 in Escherichia coli and its purification. , 1999, Protein expression and purification.
[33] P K Ponnuswamy,et al. A study of the preferred environment of amino acid residues in globular proteins. , 1977, Archives of biochemistry and biophysics.
[34] W. Kabsch,et al. Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical features , 1983, Biopolymers.
[35] J. Langowski,et al. Solution structure of glyceraldehyde-3-phosphate dehydrogenase from Haloarcula vallismortis. , 1995, Biophysical chemistry.
[36] Takeshi Kawabata,et al. GTOP: a database of protein structures predicted from genome sequences , 2002, Nucleic Acids Res..
[37] K. Nishikawa,et al. Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteria. , 2001, Journal of molecular biology.
[38] A. Karshikoff,et al. Proteins from thermophilic and mesophilic organisms essentially do not differ in packing. , 1998, Protein engineering.
[39] T. N. Bhat,et al. The Protein Data Bank: unifying the archive , 2002, Nucleic Acids Res..
[40] N. W. Davis,et al. The complete genome sequence of Escherichia coli K-12. , 1997, Science.
[41] B. Tidor,et al. Rational modification of protein stability by the mutation of charged surface residues. , 2000, Biochemistry.
[42] H. Eisenberg,et al. Biochemical, structural, and molecular genetic aspects of halophilism. , 1992, Advances in protein chemistry.
[43] G. Makhatadze,et al. Engineering a thermostable protein via optimization of charge-charge interactions on the protein surface. , 1999, Biochemistry.