论文信息 - A compiler to transfer controlled vocabularies and ontologies represented in an object-oriented programming language into text mark-up languages

A compiler to transfer controlled vocabularies and ontologies represented in an object-oriented programming language into text mark-up languages

While I was investigating methods to construct 'controlled vocabularies' and 'ontologies', I created a set of 'ontological design patterns'. These engineering design patterns and terminologies specific to some protein families were represented within the object-oriented programming language CLOS (Common Lisp Object System). Within bioinformatics, 'ontologies' are represented on the World Wide Web (WWW) in terminology files that are tagged and marked up by the syntax and keywords of HTML or XML. Therefore, I specified, designed and partially implemented a compiler to translate specified 'controlled vocabularies' and 'ontologies' represented in CLOS and structured by 'ontological design patterns' into the language called 'Simple Hypertext Ontology Extension' (SHOE). First results show that a 'one-step-look-ahead' parser can automatically print the original CLOS version of the 'ontologies' into a file reorganised according to the SHOE syntax.

Jacqueline Renée Reich

[1] K. Forbus. Structure and Interpretation of Computer Programs, by H. Abelson, G.J. Sussman with J. Sussman: Artificial Intelligence , 1985 .

[2] Guy L. Steele,et al. Common Lisp the Language , 1984 .

[3] Ian Horrocks,et al. The GRAIL concept modelling language for medical terminology , 1997, Artif. Intell. Medicine.

[4] Dieter Fensel,et al. Towards Brokering Problem-Solving Knowledge on the Internet , 1999, EKAW.

[5] Jeff Heflin,et al. Coping with Changing Ontologies in a Distributed Environment , 1999 .

[6] Jacqueline Renée Reich. Modelling molecular biological information: ontologies and ontological design patterns , 2000, IRMA Conference.

[7] Mark A. Musen,et al. Mappings for Reuse in Knowledge-based Systems , 2001 .

[8] M.N. Sastry,et al. Structure and interpretation of computer programs , 1986, Proceedings of the IEEE.

[9] G. L. Steele. Common Lisp , 1990 .

[10] M.McGee Wood,et al. Natural language processing in LISP , 1990 .

[11] Jacqueline Renée Reich,et al. Onthological design patternsfor the integration of molecular biological information , 1999, German Conference on Bioinformatics.

[12] Rudi Studer,et al. Ontologies as Conceptual Models for XML Documents , 1999 .

[13] Jacqueline Renée Reich. Ontological Design Patterns: Metadata of Molecular Biological Ontologies, Information and Knowledge , 2000, DEXA.

[14] Terry Winograd,et al. Understanding computers and cognition , 1986 .