Purification and properties of an iron‐sulfur and FAD‐containing 4‐hydroxybutyryl‐CoA dehydratase/vinylacetyl‐CoA3‐2‐isomerase from Clostridium aminobutyricum

4-Hydroxybutyryl-CoA dehydratase, the key enzyme in the metabolism of γ-aminobutyrate in Clostridium aminobutyricum, represents approximately 15–25% of the soluble protein. The enzyme was purified to homogeneity under anaerobic conditions to a specific activity of 209 nkat mg−1. The dehydratase catalyses the reversible conversion of 4-hydroxybutyryl-CoA (Km= 50 μM) to crotonyl-CoA and possesses a probably intrinsic vinylacetyl-CoA 3-2-isomerase with a specific activity of 223 nkat mg−1. The equilibrium of the reversible dehydration was determined from both sides as K= [crotonyl-CoA]/[4-hydroxybutyryl-CoA] = 4.2±0.3. Cyclopropylcarboxyl-CoA was not converted to crotonyl-CoA. The native enzyme has an apparent molecular mass of 232 kDa and is composed of four apparently identical subunits (molecular mass = 56 kDa), indicating a homotetrameric structure. Under anaerobic conditions the active enzyme revealed a brown colour and contained 2±0.2 mol FAD (64±5% oxidized). 16±0.8 mol Fe and 14.4±1.2 mol inorganic sulfur, which probably form iron-sulfur clusters. Exposure to air resulted initially in a slight activation followed by irrevesible inactivation. Concomitantly the vinylacetyl-CoA -isomerase activity was lost and the colour of the enzyme changed to yellow. Reduction by sodium dithionite yielded inactive enzyme which could be completely reactivated by oxidation with potassium hexacyanofer-rate(III). The data indicate that the active enzyme contains oxidized FAD despite its sensitivity towards oxygen. During the dehydration the dehydration a non activated C-H bond at C-3 of 4-hydroxybutyryl-CoA has to be cleaved. A putative mechanism for 4-hydroxybutyryl-CoA dehydratase is proposed in which this cleavage is achieved by a FAD-dependent oxidation of 4-hydroxybutyryl-CoA to 4-hydroxycrotonyl-CoA. In a second step the hydroxyl group is substituted by a hydride derived from the now reduced FAD in an SN2′ reaction leading to vinylacetyl-CoA. Finally isomerisation yields crotonyl-CoA. 4-Hydroxybutyryl-CoA dehydratase is quite distinct from 3-hydroxyacyl-CoA dehydratase (crotonase) and 2-hydroxyacyl-CoA dehydratases. Contrary to the latter enzymes [e.g. (R)-lactyl-CoA dehydratase and (R)-2-hydroxyglutaryl-CoA dehydratase] which are composed of three different subunits and similarly catalyse the cleavage of a non activated C-H bond at C-3, 4-hydroxybutyryl-CoA dehydratase does not require ATP, MgCl2 and Ti(III)citrate for activity. Furthermore 4-hydroxybutyryl-xybutyryl-CoA dehydratase is not inactivated by oxidants such as 5 mM 4-nitrophenol, 5 mM chloramphenicol and 5 mM hydroxylamine.

[1]  M. Bembenek,et al.  Stereospecific ketonization of 2-hydroxymuconate by 4-oxalocrotonate tautomerase and 5-(carboxymethyl)-2-hydroxymuconate isomerase , 1992 .

[2]  R. Thauer,et al.  Salt dependence, kinetic properties and catalytic mechanism of N-formylmethanofuran:tetrahydromethanopterin formyltransferase from the extreme thermophile Methanopyrus kandleri. , 1992, European journal of biochemistry.

[3]  A. Hofmeister,et al.  (R)‐Lactyl‐CoA dehydratase from Clostridium propionicum , 1992 .

[4]  W. Buckel Unusual dehydrations in anaerobic bacteria , 1992 .

[5]  A. Hofmeister,et al.  The iron-sulfur-cluster-containing L-serine dehydratase from Peptostreptococcus asaccharolyticus. Stereochemistry of the deamination of L-threonine. , 1992, European journal of biochemistry.

[6]  D. Linder,et al.  Purification of the coenzyme B12-containing 2-methyleneglutarate mutase from Clostridium barkeri by high-performance liquid chromatography. , 1991, Journal of chromatography.

[7]  U. Scherf,et al.  Purification and properties of 4-hydroxybutyrate coenzyme A transferase from Clostridium aminobutyricum , 1991, Applied and environmental microbiology.

[8]  P. Gärtner Characterization of a quinole-oxidase activity in crude extracts of Thermoplasma acidophilum and isolation of an 18-kDa cytochrome. , 1991, European journal of biochemistry.

[9]  V. Anderson,et al.  Crotonase-catalyzed beta-elimination is concerted: a double isotope effect study. , 1991, Biochemistry.

[10]  U. Eikmanns,et al.  Crystalline green 5-hydroxyvaleryl-CoA dehydratase from Clostridium aminovalericum. , 1991, European journal of biochemistry.

[11]  W. Buckel,et al.  Assay of 4-hydroxybutyryl-CoA dehydratase from Clostridium aminobutyricum. , 1990, FEMS Microbiology Letters.

[12]  W. Buckel,et al.  Assay of 4-hydroxybutyryl-CoA dehydratase from , 1990 .

[13]  D. Hale,et al.  An acyl-coenzyme A dehydrogenase assay utilizing the ferricenium ion. , 1990, Analytical biochemistry.

[14]  H. Beinert,et al.  19th Sir Hans Krebs lecture. Engineering of protein bound iron-sulfur clusters. A tool for the study of protein and cluster chemistry and mechanism of iron-sulfur enzymes. , 1989, European journal of biochemistry.

[15]  H. Beinert,et al.  Engineering of protein bound iron‐sulfur clusters , 1989 .

[16]  C. Thorpe,et al.  The reductive half-reaction in Acyl-CoA dehydrogenase from pig kidney: studies with thiaoctanoyl-CoA and oxaoctanoyl-CoA analogues. , 1988, Biochemistry.

[17]  W. Buckel,et al.  Purification of 2-hydroxyglutaryl-CoA dehydratase from Acidaminococcus fermentans. An iron-sulfur protein. , 1987, European journal of biochemistry.

[18]  C. Walsh,et al.  8-Hydroxy-5-deazaflavin-reducing hydrogenase from Methanobacterium thermoautotrophicum: 1. Purification and characterization. , 1987, Biochemistry.

[19]  R. Kuchta,et al.  Lactate reduction in Clostridium propionicum. Purification and properties of lactyl-CoA dehydratase. , 1985, The Journal of biological chemistry.

[20]  P. Hemmerich,et al.  Photoreduction of flavoproteins and other biological compounds catalyzed by deazaflavins. , 1978, Biochemistry.

[21]  U. K. Laemmli,et al.  Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4 , 1970, Nature.

[22]  Joel D. Cline,et al.  SPECTROPHOTOMETRIC DETERMINATION OF HYDROGEN SULFIDE IN NATURAL WATERS1 , 1969 .

[23]  T. Stadtman,et al.  Metabolism of omega-amino acids. IV. gamma Aminobutyrate fermentation by cell-free extracts of Clostridium aminobutyricum. , 1963, The Journal of biological chemistry.

[24]  A. DelCampillo Enzymes of fatty acid metabolism. II. Properties of crystalline crotonase. , 1956 .

[25]  E. J. Simon,et al.  The Preparation of S-Succinyl Coenzyme A , 1953 .

[26]  J. Conant,et al.  THE RELATION BETWEEN THE STRUCTURE OF ORGANIC HALIDES AND THE SPEEDS OF THEIR REACTION WITH INORGANIC IODIDES. III. THE INFLUENCE OF UNSATURATED GROUPS , 1925 .

[27]  W. Fish,et al.  Rapid colorimetric micromethod for the quantitation of complexed iron in biological samples. , 1988, Methods in enzymology.

[28]  J. Knappe,et al.  Pyruvate formate-lyase (inactive form) and pyruvate formate-lyase activating enzyme of Escherichia coli: isolation and structural properties. , 1984, Archives of biochemistry and biophysics.

[29]  R. M. Magid Nucleophilic and organometallic displacement reactions of allylic compounds: stereo-and regiochemistry , 1980 .

[30]  J. Songstad,et al.  The reactivity of 2-bromo-1-phenylethanone (phenacyl bromide) toward nucleophilic species , 1978 .

[31]  J. K. Hardman,et al.  [104b] γ-Hydroxybutyrate dehydrogenase from Clostridium aminobutyricum: ☆☆☆ , 1962 .