TDP-43 loss-of-function causes neuronal loss due to defective steroid receptor-mediated gene program switching in Drosophila.

TDP-43 proteinopathy is strongly implicated in the pathogenesis of amyotrophic lateral sclerosis and related neurodegenerative disorders. Whether TDP-43 neurotoxicity is caused by a novel toxic gain-of-function mechanism of the aggregates or by a loss of its normal function is unknown. We increased and decreased expression of TDP-43 (dTDP-43) in Drosophila. Although upregulation of dTDP-43 induced neuronal ubiquitin and dTDP-43-positive inclusions, both up- and downregulated dTDP-43 resulted in selective apoptosis of bursicon neurons and highly similar transcriptome alterations at the pupal-adult transition. Gene network analysis and genetic validation showed that both up- and downregulated dTDP-43 directly and dramatically increased the expression of the neuronal microtubule-associated protein Map205, resulting in cytoplasmic accumulations of the ecdysteroid receptor (EcR) and a failure to switch EcR-dependent gene programs from a pupal to adult pattern. We propose that dTDP-43 neurotoxicity is caused by a loss of its normal function.

[1]  S. Pereson,et al.  TDP-43 transgenic mice develop spastic paralysis and neuronal inclusions characteristic of ALS and frontotemporal lobar degeneration , 2010, Proceedings of the National Academy of Sciences.

[2]  C. Helfrich-Förster,et al.  Targeted ablation of CCAP neuropeptide-containing neurons of Drosophila causes specific defects in execution and circadian timing of ecdysis behavior , 2003, Development.

[3]  A. D’Ambrogio,et al.  Depletion of TDP‐43 affects Drosophila motoneurons terminal synapsis and locomotive behavior , 2009, FEBS letters.

[4]  X. Vafopoulou Ecdysteroid receptor (EcR) is associated with microtubules and with mitochondria in the cytoplasm of prothoracic gland cells of Rhodnius prolixus (Hemiptera). , 2009, Archives of insect biochemistry and physiology.

[5]  Jane Y. Wu,et al.  A Drosophila model for TDP-43 proteinopathy , 2010, Proceedings of the National Academy of Sciences.

[6]  Rebecca B. Smith,et al.  Native Functions of the Androgen Receptor Are Essential to Pathogenesis in a Drosophila Model of Spinobulbar Muscular Atrophy , 2010, Neuron.

[7]  J. Fristrom,et al.  The Drosophila Broad-Complex early gene directly regulates late gene transcription during the ecdysone-induced puffing cascade. , 1996, Developmental biology.

[8]  J. Trojanowski,et al.  TDP-43 Mediates Degeneration in a Novel Drosophila Model of Disease Caused by Mutations in VCP/p97 , 2010, The Journal of Neuroscience.

[9]  D. Cleveland,et al.  TDP-43 and FUS/TLS: emerging roles in RNA processing and neurodegeneration. , 2010, Human molecular genetics.

[10]  T. Zhao,et al.  A Drosophila Gain-of-Function Screen for Candidate Genes Involved in Steroid-Dependent Neuroendocrine Cell Remodeling , 2008, Genetics.

[11]  Thomas Lengauer,et al.  Survey on the PABC recognition motif PAM2. , 2004, Biochemical and biophysical research communications.

[12]  L. Goldstein,et al.  Genetic analysis of a Drosophila microtubule-associated protein , 1992, The Journal of cell biology.

[13]  Pico Caroni,et al.  Selective Neuronal Vulnerability in Neurodegenerative Diseases: from Stressor Thresholds to Degeneration , 2011, Neuron.

[14]  D. Wassarman,et al.  Ubiquilin Modifies TDP-43 Toxicity in a Drosophila Model of Amyotrophic Lateral Sclerosis (ALS)* , 2010, The Journal of Biological Chemistry.

[15]  E. Buratti,et al.  Regulation of gene expression by TDP-43 and FUS/TLS in frontotemporal lobar degeneration. , 2011, Current Alzheimer research.

[16]  Stein Aerts,et al.  Robust Target Gene Discovery through Transcriptome Perturbations and Genome-Wide Enhancer Predictions in Drosophila Uncovers a Regulatory Basis for Sensory Specification , 2010, PLoS biology.

[17]  Frederick P. Roth,et al.  Identification of Neuronal RNA Targets of TDP-43-containing Ribonucleoprotein Complexes , 2010, The Journal of Biological Chemistry.

[18]  R. Chitta,et al.  Global analysis of TDP-43 interacting proteins reveals strong association with RNA splicing and translation machinery. , 2010, Journal of proteome research.

[19]  Gene W. Yeo,et al.  Long pre-mRNA depletion and RNA missplicing contribute to neuronal vulnerability from loss of TDP-43 , 2011, Nature Neuroscience.

[20]  J. Trojanowski,et al.  Gains or losses: molecular mechanisms of TDP43-mediated neurodegeneration , 2011, Nature Reviews Neuroscience.

[21]  C. Sephton,et al.  TDP-43 Is a Developmentally Regulated Protein Essential for Early Embryonic Development* , 2009, The Journal of Biological Chemistry.

[22]  J. Gustafsson,et al.  Neuropathologic and Biochemical Changes During Disease Progression in Liver X Receptor &bgr;−/− Mice, A Model of Adult Neuron Disease , 2010, Journal of neuropathology and experimental neurology.

[23]  D. Price,et al.  Altered distributions of Gemini of coiled bodies and mitochondria in motor neurons of TDP-43 transgenic mice , 2010, Proceedings of the National Academy of Sciences.

[24]  Peter J. Bickel,et al.  The Developmental Transcriptome of Drosophila melanogaster , 2010, Nature.

[25]  G. Schellenberg,et al.  Loss of murine TDP-43 disrupts motor function and plays an essential role in embryogenesis , 2010, Acta Neuropathologica.

[26]  D. Price,et al.  Deletion of TDP-43 down-regulates Tbc1d1, a gene linked to obesity, and alters body fat metabolism , 2010, Proceedings of the National Academy of Sciences.

[27]  J. Gustafsson,et al.  Inactivation of liver X receptor beta leads to adult-onset motor neuron degeneration in male mice. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[28]  J. Ule,et al.  Characterizing the RNA targets and position-dependent splicing regulation by TDP-43. , 2011, Nature neuroscience.

[29]  S. Aerts,et al.  i-cisTarget: an integrative genomics method for the prediction of regulatory features and cis-regulatory modules , 2012, Nucleic acids research.

[30]  N. Shneider,et al.  The ALS-associated proteins FUS and TDP-43 function together to affect Drosophila locomotion and life span. , 2011, The Journal of clinical investigation.

[31]  Lien-Szu Wu,et al.  Targeted Depletion of TDP-43 Expression in the Spinal Cord Motor Neurons Leads to the Development of Amyotrophic Lateral Sclerosis-like Phenotypes in Mice* , 2012, Journal of Biological Chemistry.

[32]  S. Jiang,et al.  TDP‐43, a neuro‐pathosignature factor, is essential for early mouse embryogenesis , 2009, Genesis.

[33]  B. McConkey,et al.  TARDBP mutations in individuals with sporadic and familial amyotrophic lateral sclerosis , 2008, Nature Genetics.

[34]  J. Gustafsson,et al.  Liver X receptors in the central nervous system: From lipid homeostasis to neuronal degeneration , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[35]  Xiaofeng Zhou,et al.  Broad specifies pupal development and mediates the 'status quo' action of juvenile hormone on the pupal-adult transformation in Drosophila and Manduca. , 2002, Development.

[36]  W. Huber,et al.  Differential expression analysis for sequence count data , 2010 .

[37]  M. Fortini,et al.  Apoptotic Activities of Wild-Type and Alzheimer's Disease-Related Mutant Presenilins in Drosophila melanogaster , 1999, The Journal of cell biology.

[38]  D. Satoh,et al.  Polarity and intracellular compartmentalization of Drosophila neurons , 2007, Neural Development.

[39]  Dennis J. Hazelett,et al.  Comparison of Parallel High-Throughput RNA Sequencing Between Knockout of TDP-43 and Its Overexpression Reveals Primarily Nonreciprocal and Nonoverlapping Gene Expression Changes in the Central Nervous System of Drosophila , 2012, G3: Genes | Genomes | Genetics.

[40]  J. Gustafsson,et al.  Liver X receptor β (LXRβ): A link between β-sitosterol and amyotrophic lateral sclerosis–Parkinson's dementia , 2008, Proceedings of the National Academy of Sciences.

[41]  Bruce L. Miller,et al.  Ubiquitinated TDP-43 in Frontotemporal Lobar Degeneration and Amyotrophic Lateral Sclerosis , 2006, Science.

[42]  G. Rouleau,et al.  Gain and loss of function of ALS-related mutations of TARDBP (TDP-43) cause motor deficits in vivo. , 2010, Human molecular genetics.

[43]  Zuoshang Xu Does a loss of TDP-43 function cause neurodegeneration? , 2012, Molecular Neurodegeneration.

[44]  C. Thummel,et al.  Nuclear receptors — a perspective from Drosophila , 2005, Nature Reviews Genetics.

[45]  David R. Kelley,et al.  Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks , 2012, Nature Protocols.

[46]  Xun Hu,et al.  TDP-43 Mutations in Familial and Sporadic Amyotrophic Lateral Sclerosis , 2008, Science.

[47]  M. Sendtner TDP-43: multiple targets, multiple disease mechanisms? , 2011, Nature Neuroscience.

[48]  W. Talbot,et al.  Ecdysone receptor expression in the CNS correlates with stage-specific responses to ecdysteroids during Drosophila and Manduca development. , 1994, Development.

[49]  C. Shen,et al.  Neuronal Function and Dysfunction of Drosophila dTDP , 2011, PloS one.

[50]  M. Nitabach,et al.  Functional Dissection of a Neuronal Network Required for Cuticle Tanning and Wing Expansion in Drosophila , 2006, The Journal of Neuroscience.

[51]  H. Akiyama,et al.  TDP-43 is a component of ubiquitin-positive tau-negative inclusions in frontotemporal lobar degeneration and amyotrophic lateral sclerosis. , 2006, Biochemical and biophysical research communications.