Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
暂无分享,去创建一个
H. Klenk | R. O’Malley | R. Egan | M. Göker | T. Woyke | A. Copeland | Jan-Fang Cheng | C. Daum | A. Murray | Matthew Zane | Alicia Clum | A. Detweiler | B. Bebout | Janey Lee | J. Pett‐Ridge | E. Singer | S. Lindemann | V. Sevim | Hope N. Hundley | Juna Lee | R. C. Everroad | Ronan C. O’Malley | Hope Hundley
[1] T. Michael,et al. Generating a high-confidence reference genome map of the Greater Duckweed by integration of cytogenomic, optical mapping, and Oxford Nanopore technologies. , 2018, The Plant journal : for cell and molecular biology.
[2] Richard E. Green,et al. Improving nanopore read accuracy with the R2C2 method enables the sequencing of highly multiplexed full-length single-cell cDNA , 2018, Proceedings of the National Academy of Sciences.
[3] M. Huss,et al. Stationary and portable sequencing-based approaches for tracing wastewater contamination in urban stormwater systems , 2018, Scientific Reports.
[4] Jelle Matthijnssens,et al. Nanopore sequencing as a revolutionary diagnostic tool for porcine viral enteric disease complexes identifies porcine kobuvirus as an important enteric virus , 2018, Scientific Reports.
[5] Yutaka Suzuki,et al. Nanopore sequencing of drug-resistance-associated genes in malaria parasites, Plasmodium falciparum , 2018, Scientific Reports.
[6] Dieter Deforce,et al. Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO , 2018, Scientific Reports.
[7] Aaron Pomerantz,et al. Real-time DNA barcoding in a rainforest using nanopore sequencing: opportunities for rapid biodiversity assessments and local capacity building , 2018, GigaScience.
[8] Mathias Vandenbogaert,et al. Early MinION™ nanopore single-molecule sequencing technology enables the characterization of hepatitis B virus genetic complexity in clinical samples , 2018, PloS one.
[9] John R Tyson,et al. MinION-based long-read sequencing and assembly extends the Caenorhabditis elegans reference genome , 2018, Genome research.
[10] A. Ameur,et al. Single molecule real-time (SMRT) sequencing comes of age: applications and utilities for medical diagnostics , 2018, Nucleic acids research.
[11] Brent S. Pedersen,et al. Nanopore sequencing and assembly of a human genome with ultra-long reads , 2017, Nature Biotechnology.
[12] Yi Chen,et al. Quasimetagenomics-Based and Real-Time-Sequencing-Aided Detection and Subtyping of Salmonella enterica from Food Samples , 2017, Applied and Environmental Microbiology.
[13] Tong Zhang,et al. MinION Nanopore Sequencing Enables Correlation between Resistome Phenotype and Genotype of Coliform Bacteria in Municipal Sewage , 2017, Front. Microbiol..
[14] Brian Bushnell,et al. BBMerge – Accurate paired shotgun read merging via overlap , 2017, PloS one.
[15] John P. Dekker,et al. Rapid Nanopore Sequencing of Plasmids and Resistance Gene Detection in Clinical Isolates , 2017, Journal of Clinical Microbiology.
[16] M. Huynen,et al. Whole-Genome Sequencing of Bacterial Pathogens: the Future of Nosocomial Outbreak Analysis , 2017, Clinical Microbiology Reviews.
[17] Joe Parker,et al. Field-based species identification of closely-related plants using real-time nanopore sequencing , 2017, Scientific Reports.
[18] T. Imanishi,et al. A portable system for rapid bacterial composition analysis using a nanopore-based sequencer and laptop computer , 2017, Scientific Reports.
[19] Sumio Sugano,et al. Serotyping dengue virus with isothermal amplification and a portable sequencer , 2017, Scientific Reports.
[20] Philip D. Blood,et al. Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software , 2017, Nature Methods.
[21] H. Spaink,et al. De novo whole-genome assembly of a wild type yeast isolate using nanopore sequencing , 2017, F1000Research.
[22] Jinyang Zhao,et al. Genome sequencing of the sweetpotato whitefly Bemisia tabaci MED/Q , 2017, GigaScience.
[23] R. Franklin,et al. MinION TM nanopore sequencing of environmental metagenomes: a synthetic approach , 2017 .
[24] Michael Liem,et al. Rapid de novo assembly of the European eel genome from nanopore sequencing reads , 2017, Scientific Reports.
[25] Phelim Bradley,et al. Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples , 2016, Journal of Clinical Microbiology.
[26] Michael R. Lindberg,et al. A Comparison and Integration of MiSeq and MinION Platforms for Sequencing Single Source and Mixed Mitochondrial Genomes , 2016, PloS one.
[27] Jan-Fang Cheng,et al. Next generation sequencing data of a defined microbial mock community , 2016, Scientific Data.
[28] S. Deschamps,et al. Characterization, correction and de novo assembly of an Oxford Nanopore genomic dataset from Agrobacterium tumefaciens , 2016, Scientific Reports.
[29] Yaniv Erlich,et al. Using mobile sequencers in an academic classroom , 2016, eLife.
[30] M. Esumi,et al. Pitfalls of DNA Quantification Using DNA-Binding Fluorescent Dyes and Suggested Solutions , 2016, PloS one.
[31] Asaf Levy,et al. High-resolution phylogenetic microbial community profiling , 2016, The ISME Journal.
[32] David A. Matthews,et al. Real-time, portable genome sequencing for Ebola surveillance , 2016, Nature.
[33] Niranjan Nagarajan,et al. INC-Seq: accurate single molecule reads using nanopore sequencing , 2016, bioRxiv.
[34] John F. Mulley,et al. Assessing the utility of the Oxford Nanopore MinION for snake venom gland cDNA sequencing , 2015, PeerJ.
[35] S. Tringe,et al. Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community , 2015, BMC Genomics.
[36] David A. Eccles,et al. MinION Analysis and Reference Consortium: Phase 1 data release and analysis , 2015, F1000Research.
[37] Yunfan Fan,et al. Nanopore sequencing detects structural variants in cancer , 2015, bioRxiv.
[38] Heng Li,et al. BFC: correcting Illumina sequencing errors , 2015, Bioinform..
[39] Richard J. Hall,et al. MinION nanopore sequencing of an influenza genome , 2015, Front. Microbiol..
[40] Gkikas Magiorkinis,et al. A novel method for the multiplexed target enrichment of MinION next generation sequencing libraries using PCR-generated baits , 2015, Nucleic acids research.
[41] Julian Parkhill,et al. Early insights into the potential of the Oxford Nanopore MinION for the detection of antimicrobial resistance genes , 2015, The Journal of antimicrobial chemotherapy.
[42] Joshua Quick,et al. Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella , 2015, Genome Biology.
[43] Alvin T. Liem,et al. Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer , 2015, GigaScience.
[44] T Laver,et al. Assessing the performance of the Oxford Nanopore Technologies MinION , 2015, Biomolecular detection and quantification.
[45] P. Ashton,et al. MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island , 2014, Nature Biotechnology.
[46] N. Loman,et al. A complete bacterial genome assembled de novo using only nanopore sequencing data , 2015, Nature Methods.
[47] Sara Goodwin,et al. Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome , 2015, bioRxiv.
[48] A. Mikheyev,et al. A first look at the Oxford Nanopore MinION sequencer , 2014, Molecular ecology resources.
[49] Aaron R. Quinlan,et al. A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer , 2014, bioRxiv.
[50] A. Quinlan. BEDTools: The Swiss‐Army Tool for Genome Feature Analysis , 2014, Current protocols in bioinformatics.
[51] T. Metz,et al. Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions , 2014, Front. Microbiol..
[52] Xiaorong Wei,et al. Global pattern of soil carbon losses due to the conversion of forests to agricultural land , 2014, Scientific Reports.
[53] A. Bashir,et al. Diversified Microbiota of Meconium Is Affected by Maternal Diabetes Status , 2013, PloS one.
[54] Mauricio O. Carneiro,et al. The advantages of SMRT sequencing , 2013, Genome Biology.
[55] Alexey A. Gurevich,et al. QUAST: quality assessment tool for genome assemblies , 2013, Bioinform..
[56] Katherine H. Huang,et al. A framework for human microbiome research , 2012, Nature.
[57] Sergey I. Nikolenko,et al. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing , 2012, J. Comput. Biol..
[58] Juliane C. Dohm,et al. Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems , 2011, Genome Biology.
[59] Nancy F. Hansen,et al. Accurate Whole Human Genome Sequencing using Reversible Terminator Chemistry , 2008, Nature.
[60] Juliane C. Dohm,et al. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing , 2008, Nucleic acids research.
[61] Gabor T. Marth,et al. Whole-genome sequencing and variant discovery in C. elegans , 2008, Nature Methods.
[62] Akwasi A. Boateng,et al. Switchgrass as a biofuels feedstock in the USA , 2006 .
[63] S. Salzberg,et al. Versatile and open software for comparing large genomes , 2004, Genome Biology.
[64] D. Moore,et al. Preparation and Analysis of DNA , 2002 .
[65] D. Branton,et al. Characterization of individual polynucleotide molecules using a membrane channel. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[66] A. Hiraishi,et al. Chloroflexus aggregans sp. nov., a filamentous phototrophic bacterium which forms dense cell aggregates by active gliding movement. , 1995, International journal of systematic bacteriology.