Functional Analysis of Centrosomal Kinase Substrates in Drosophila melanogaster Reveals a New Function of the Nuclear Envelope Component Otefin in Cell Cycle Progression

ABSTRACT Phosphorylation is one of the key mechanisms that regulate centrosome biogenesis, spindle assembly, and cell cycle progression. However, little is known about centrosome-specific phosphorylation sites and their functional relevance. Here, we identified phosphoproteins of intact Drosophila melanogaster centrosomes and found previously unknown phosphorylation sites in known and unexpected centrosomal components. We functionally characterized phosphoproteins and integrated them into regulatory signaling networks with the 3 important mitotic kinases, cdc2, polo, and aur, as well as the kinase CkIIβ. Using a combinatorial RNA interference (RNAi) strategy, we demonstrated novel functions for P granule, nuclear envelope (NE), and nuclear proteins in centrosome duplication, maturation, and separation. Peptide microarrays confirmed phosphorylation of identified residues by centrosome-associated kinases. For a subset of phosphoproteins, we identified previously unknown centrosome and/or spindle localization via expression of tagged fusion proteins in Drosophila SL2 cells. Among those was otefin (Ote), an NE protein that we found to localize to centrosomes. Furthermore, we provide evidence that it is phosphorylated in vitro at threonine 63 (T63) through Aurora-A kinase. We propose that phosphorylation of this site plays a dual role in controlling mitotic exit when phosphorylated while dephosphorylation promotes G2/M transition in Drosophila SL2 cells.

[1]  Arend Sidow,et al.  A Cell Cycle Phosphoproteome of the Yeast Centrosome , 2011, Science.

[2]  M. Ralser,et al.  Monitoring protein expression in whole-cell extracts by targeted label- and standard-free LC-MS/MS , 2011, Nature Protocols.

[3]  M. Boutros,et al.  Proteomic and functional analysis of the mitotic Drosophila centrosome , 2010, The EMBO journal.

[4]  Feng Zhang,et al.  The Plk1-dependent Phosphoproteome of the Early Mitotic Spindle* , 2010, Molecular & Cellular Proteomics.

[5]  B. Fontoura,et al.  The Nup107-160 complex and γ-TuRC regulate microtubule polymerization at kinetochores , 2010, Nature Cell Biology.

[6]  J. Raff,et al.  Centrioles, Centrosomes, and Cilia in Health and Disease , 2009, Cell.

[7]  Carola Engler,et al.  Golden Gate Shuffling: A One-Pot DNA Shuffling Method Based on Type IIs Restriction Enzymes , 2009, PloS one.

[8]  Carola Engler,et al.  A One Pot, One Step, Precision Cloning Method with High Throughput Capability , 2008, PloS one.

[9]  Buzz Baum,et al.  A Genome-Wide RNAi Screen to Dissect Centriole Duplication and Centrosome Maturation in Drosophila , 2008, PLoS biology.

[10]  Giovanni Cenci,et al.  Identification of Drosophila Mitotic Genes by Combining Co-Expression Analysis and RNA Interference , 2008, PLoS genetics.

[11]  Alexey Khodjakov,et al.  Centrosome Amplification Can Initiate Tumorigenesis in Flies , 2008, Cell.

[12]  I. Vernos,et al.  Spindle-localized CPE-mediated translation controls meiotic chromosome segregation , 2008, Nature Cell Biology.

[13]  C. Deane,et al.  A Microtubule Interactome: Complexes with Roles in Cell Cycle and Mitosis , 2008, PLoS biology.

[14]  Julian Mintseris,et al.  Phosphoproteome analysis of Drosophila melanogaster embryos. , 2008, Journal of proteome research.

[15]  D. Forbes,et al.  Centrin 2 Localizes to the Vertebrate Nuclear Pore and Plays a Role in mRNA and Protein Export , 2008, Molecular and Cellular Biology.

[16]  R. Heald,et al.  Genome-wide analysis demonstrates conserved localization of messenger RNAs to mitotic microtubules , 2007, The Journal of cell biology.

[17]  Ruedi Aebersold,et al.  PhosphoPep—a phosphoproteome resource for systems biology research in Drosophila Kc167 cells , 2007, Molecular systems biology.

[18]  F. Gergely,et al.  Aurora-A: the maker and breaker of spindle poles , 2007, Journal of Cell Science.

[19]  J. Raff,et al.  Maintaining the proper connection between the centrioles and the pericentriolar matrix requires Drosophila Centrosomin , 2007, The Journal of cell biology.

[20]  David M. Glover,et al.  Centrosome biogenesis and function: centrosomics brings new understanding , 2007, Nature Reviews Molecular Cell Biology.

[21]  S. Gammeltoft,et al.  Proteomic screen defines the Polo‐box domain interactome and identifies Rock2 as a Plk1 substrate , 2007, The EMBO journal.

[22]  R. Wollman,et al.  Genes Required for Mitotic Spindle Assembly in Drosophila S2 Cells , 2007, Science.

[23]  Karen Oegema,et al.  A microtubule-independent role for centrosomes and aurora a in nuclear envelope breakdown. , 2007, Developmental cell.

[24]  M. Larsen,et al.  Highly selective enrichment of phosphorylated peptides using titanium dioxide , 2006, Nature Protocols.

[25]  H. Maiato,et al.  The ultrastructure of the kinetochore and kinetochore fiber in Drosophila somatic cells , 2006, Chromosoma.

[26]  Uttam Surana,et al.  Cdk1 regulates centrosome separation by restraining proteolysis of microtubule‐associated proteins , 2006, The EMBO journal.

[27]  H. Erickson Faculty Opinions recommendation of Drosophila melanogaster gamma-TuRC is dispensable for targeting gamma-tubulin to the centrosome and microtubule nucleation. , 2006 .

[28]  Erich A Nigg,et al.  Phosphoproteome analysis of the human mitotic spindle. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[29]  S. Adam,et al.  A Mitotic Lamin B Matrix Induced by RanGTP Required for Spindle Assembly , 2006, Science.

[30]  Jussi Taipale,et al.  Identification of pathways regulating cell size and cell-cycle progression by RNAi , 2006, Nature.

[31]  H. Bourbon,et al.  Drosophila melanogaster γ-TuRC is dispensable for targeting γ-tubulin to the centrosome and microtubule nucleation , 2006, The Journal of cell biology.

[32]  B. Lange,et al.  Immunoisolation of Centrosomes from Drosophila melanogaster , 2005, Current protocols in cell biology.

[33]  Takashi Ito,et al.  The conserved kinase NHK-1 is essential for mitotic progression and unifying acentrosomal meiotic spindles in Drosophila melanogaster , 2005, The Journal of cell biology.

[34]  Christopher J. Wilkinson,et al.  The Polo kinase Plk4 functions in centriole duplication , 2005, Nature Cell Biology.

[35]  Dannel McCollum,et al.  Centrosomes in cellular regulation. , 2005, Annual review of cell and developmental biology.

[36]  G. Sluder Two-way traffic: centrosomes and the cell cycle , 2005, Nature Reviews Molecular Cell Biology.

[37]  J. Yates,et al.  Proteomic Analysis of Isolated Chlamydomonas Centrioles Reveals Orthologs of Ciliary-Disease Genes , 2005, Current Biology.

[38]  Hans Lehrach,et al.  Nanoflow liquid chromatography coupled to matrix‐assisted laser desorption/ionization mass spectrometry: Sample preparation, data analysis, and application to the analysis of complex peptide mixtures , 2005, Proteomics.

[39]  D. M. Glover,et al.  Genome-wide survey of protein kinases required for cell cycle progression , 2004, Nature.

[40]  M. Paddy,et al.  Megator, an essential coiled-coil protein that localizes to the putative spindle matrix during mitosis in Drosophila. , 2004, Molecular biology of the cell.

[41]  Peer Bork,et al.  Homology‐based functional proteomics by mass spectrometry: Application to the Xenopus microtubule‐associated proteome , 2004, Proteomics.

[42]  M. Mann,et al.  The abc's (and xyz's) of peptide sequencing , 2004, Nature Reviews Molecular Cell Biology.

[43]  Tanya M. Teslovich,et al.  Comparative Genomics Identifies a Flagellar and Basal Body Proteome that Includes the BBS5 Human Disease Gene , 2004, Cell.

[44]  Tsutomu Ohta,et al.  Nucleosomal histone kinase-1 phosphorylates H2A Thr 119 during mitosis in the early Drosophila embryo. , 2004, Genes & development.

[45]  J. Ahringer,et al.  The C. elegans Hook Protein, ZYG-12, Mediates the Essential Attachment between the Centrosome and Nucleus , 2003, Cell.

[46]  James R. Knight,et al.  A Protein Interaction Map of Drosophila melanogaster , 2003, Science.

[47]  M. Mann,et al.  Proteomic characterization of the human centrosome by protein correlation profiling , 2003, Nature.

[48]  M. Okuda The role of nucleophosmin in centrosome duplication , 2002, Oncogene.

[49]  D. Berdnik,et al.  Drosophila Aurora-A Is Required for Centrosome Maturation and Actin-Dependent Asymmetric Protein Localization during Mitosis , 2002, Current Biology.

[50]  M. Bornens Centrosome composition and microtubule anchoring mechanisms. , 2002, Current opinion in cell biology.

[51]  B. Lange Integration of the centrosome in cell cycle control, stress response and signal transduction pathways. , 2002, Current opinion in cell biology.

[52]  Roland Eils,et al.  Nuclear Envelope Breakdown Proceeds by Microtubule-Induced Tearing of the Lamina , 2002, Cell.

[53]  T. Schroer,et al.  Cytoplasmic Dynein as a Facilitator of Nuclear Envelope Breakdown , 2002, Cell.

[54]  J. Schneider-Mergener,et al.  Applications of peptide arrays prepared by the SPOT-technology. , 2001, Current opinion in biotechnology.

[55]  M. Montenarh,et al.  Subcellular localization of protein kinase CK2 , 2000, Cell and Tissue Research.

[56]  J. C. Clemens,et al.  Use of double-stranded RNA interference in Drosophila cell lines to dissect signal transduction pathways. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[57]  T. Hays,et al.  Cytoplasmic Dynein Is Required for the Nuclear Attachment and Migration of Centrosomes during Mitosis in Drosophila , 1999, The Journal of cell biology.

[58]  N. Stuurman,et al.  Interactions among Drosophila Nuclear Envelope Proteins Lamin, Otefin, and YA , 1998, Molecular and Cellular Biology.

[59]  M. Mann,et al.  Analysis of the Saccharomyces Spindle Pole by Matrix-assisted Laser Desorption/Ionization (MALDI) Mass Spectrometry , 1998, The Journal of cell biology.

[60]  E. Nigg,et al.  Phosphorylation by p34cdc2 Protein Kinase Regulates Binding of the Kinesin-related Motor HsEg5 to the Dynactin Subunit p150Glued * , 1997, The Journal of Biological Chemistry.

[61]  A. Weiss,et al.  Localization and posttranslational modifications of otefin, a protein required for vesicle attachment to chromatin, during Drosophila melanogaster development , 1997, Molecular and cellular biology.

[62]  A. Debec,et al.  Structural alterations of the mitotic apparatus induced by the heat shock response in Drosophila cells , 1997, Biology of the cell.

[63]  H. Lane,et al.  Antibody microinjection reveals an essential role for human polo-like kinase 1 (Plk1) in the functional maturation of mitotic centrosomes , 1996, The Journal of cell biology.

[64]  D. Agard,et al.  Time-resolved, in vivo studies of mitotic spindle formation and nuclear lamina breakdown in Drosophila early embryos. , 1996, Journal of cell science.

[65]  M. Schliwa,et al.  Molecular components of the centrosome. , 1993, Trends in cell biology.

[66]  R. Malmstrom,et al.  A Centrosome-Independent Role for g-TuRC Proteins in the Spindle Assembly Checkpoint , 2006 .

[67]  M. Montenarh,et al.  Subcellular localization of protein kinase CK2. A key to its function? , 2000, Cell and tissue research.

[68]  R. Palazzo,et al.  Centrosome maturation. , 2000, Current topics in developmental biology.

[69]  J. Schneider-Mergener,et al.  Coherent membrane supports for parallel microsynthesis and screening of bioactive peptides. , 2000, Biopolymers.

[70]  B. Alberts,et al.  Isolation of centrosomes from Drosophila embryos. , 1999, Methods in cell biology.

[71]  K. Suprenant Microtubules, ribosomes, and RNA: evidence for cytoplasmic localization and translational regulation. , 1993, Cell motility and the cytoskeleton.

[72]  C. Sunkel,et al.  polo, a mitotic mutant of Drosophila displaying abnormal spindle poles. , 1988, Journal of cell science.