Genes with internal repeats require the THO complex for transcription

The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes, is required for the efficient expression of FLO11 and other yeast genes that have long internal tandem repeats. FLO11 transcription elongation in Tho− mutants is hindered in the region of the tandem repeats, resulting in a loss of function. Moreover, the repeats become genetically unstable in Tho− mutants. A FLO11 gene without the tandem repeats is transcribed equally well in Tho+ or Tho− strains. The Tho− defect in transcription is suppressed by overexpression of topoisomerase I, suggesting that the THO complex functions to rectify aberrant structures that arise during transcription.

[1]  Marc Drolet,et al.  Growth inhibition mediated by excess negative supercoiling: the interplay between transcription elongation, R‐loop formation and DNA topology , 2006, Molecular microbiology.

[2]  J. Manley,et al.  Inactivation of the SR Protein Splicing Factor ASF/SF2 Results in Genomic Instability , 2005, Cell.

[3]  Fran Lewitter,et al.  Intragenic tandem repeats generate functional variability , 2005, Nature Genetics.

[4]  Richard J. Edwards,et al.  Tandem repeat copy-number variation in protein-coding regions of human genes , 2005, Genome Biology.

[5]  R. Reed,et al.  TREX, SR proteins and export of mRNA. , 2005, Current opinion in cell biology.

[6]  Xiaoling Wang,et al.  Human hHpr1/p84/Thoc1 Regulates Transcriptional Elongation and Physically Links RNA Polymerase II and RNA Processing Factors , 2005, Molecular and Cellular Biology.

[7]  R. Shiekhattar,et al.  Linking transcriptional elongation and messenger RNA export to metastatic breast cancers. , 2005, Cancer research.

[8]  Kevin Struhl,et al.  Distinction and relationship between elongation rate and processivity of RNA polymerase II in vivo. , 2005, Molecular cell.

[9]  T. Jensen,et al.  Modulation of transcription affects mRNP quality. , 2004, Molecular cell.

[10]  A. Mitchell,et al.  Multivesicular body-ESCRT components function in pH response regulation in Saccharomyces cerevisiae and Candida albicans. , 2004, Molecular biology of the cell.

[11]  S. Lacadie,et al.  Biochemical analysis of TREX complex recruitment to intronless and intron‐containing yeast genes , 2004, The EMBO journal.

[12]  T. Köcher,et al.  Genome-wide analysis of mRNAs regulated by the THO complex in Drosophila melanogaster , 2004, Nature Structural &Molecular Biology.

[13]  Megan Bergkessel,et al.  An Essential Role for the Saccharomyces cerevisiae DEAD-Box Helicase DHH1 in G1/S DNA-Damage Checkpoint Recovery , 2004, Genetics.

[14]  Cora Styles,et al.  Genetic and Epigenetic Regulation of the FLO Gene Family Generates Cell-Surface Variation in Yeast , 2004, Cell.

[15]  N. Krogan,et al.  Transitions in RNA polymerase II elongation complexes at the 3′ ends of genes , 2004, The EMBO journal.

[16]  L. M. Hernández,et al.  Identification of low-dye-binding (ldb) mutants of Saccharomyces cerevisiae. , 2004, FEMS yeast research.

[17]  M. Keogh,et al.  Using chromatin immunoprecipitation to map cotranscriptional mRNA processing in Saccharomyces cerevisiae. , 2004, Methods in molecular biology.

[18]  C. Kane,et al.  Running with RNA polymerase: eukaryotic transcript elongation. , 2003, Trends in genetics : TIG.

[19]  Andrés Aguilera,et al.  Cotranscriptionally formed DNA:RNA hybrids mediate transcription elongation impairment and transcription-associated recombination. , 2003, Molecular cell.

[20]  Julia R. Köhler Mos10 (Vps60) is required for normal filament maturation in Saccharomyces cerevisiae , 2003, Molecular microbiology.

[21]  J. Hoheisel,et al.  Genome-wide Analysis of the Response to Cell Wall Mutations in the Yeast Saccharomyces cerevisiae* , 2003, Journal of Biological Chemistry.

[22]  Roy Parker,et al.  Decapping and Decay of Messenger RNA Occur in Cytoplasmic Processing Bodies , 2003 .

[23]  P. Meluh,et al.  The Yeast RSC Chromatin-Remodeling Complex Is Required for Kinetochore Function in Chromosome Segregation , 2003, Molecular and Cellular Biology.

[24]  S. Strahl,et al.  Members of the Evolutionarily Conserved PMT Family of ProteinO-Mannosyltransferases Form Distinct Protein Complexes among Themselves* , 2003, The Journal of Biological Chemistry.

[25]  J. Fridovich-Keil,et al.  Scp160p associates with specific mRNAs in yeast. , 2003, Nucleic acids research.

[26]  A. Aguilera,et al.  Molecular evidence for a positive role of Spt4 in transcription elongation , 2003, The EMBO journal.

[27]  A. Mitchell,et al.  The Transcription Factor Rim101p Governs Ion Tolerance and Cell Differentiation by Direct Repression of the Regulatory Genes NRG1 and SMP1 in Saccharomyces cerevisiae , 2003, Molecular and Cellular Biology.

[28]  Daniel Zenklusen,et al.  Stable mRNP Formation and Export Require Cotranscriptional Recruitment of the mRNA Export Factors Yra1p and Sub2p by Hpr1p , 2002, Molecular and Cellular Biology.

[29]  R. Luna,et al.  The yeast THO complex and mRNA export factors link RNA metabolism with transcription and genome instability , 2002, The EMBO journal.

[30]  F. Klis,et al.  GPI7 affects cell-wall protein anchorage in Saccharomyces cerevisiae and Candida albicans. , 2002, Microbiology.

[31]  J. Bonifacino,et al.  Genomic screen for vacuolar protein sorting genes in Saccharomyces cerevisiae. , 2002, Molecular biology of the cell.

[32]  Valmik K. Vyas,et al.  Snf1 Protein Kinase and the Repressors Nrg1 and Nrg2 Regulate FLO11, Haploid Invasive Growth, and Diploid Pseudohyphal Differentiation , 2002, Molecular and Cellular Biology.

[33]  Kevin Struhl,et al.  TREX is a conserved complex coupling transcription with messenger RNA export , 2002, Nature.

[34]  T. Maniatis,et al.  An extensive network of coupling among gene expression machines , 2002, Nature.

[35]  D. A. Smillie,et al.  RNA helicase p54 (DDX6) is a shuttling protein involved in nuclear assembly of stored mRNP particles. , 2002, Journal of cell science.

[36]  H. Klein,et al.  hpr1Δ Affects Ribosomal DNA Recombination and Cell Life Span in Saccharomyces cerevisiae , 2002, Molecular and Cellular Biology.

[37]  G. Carman,et al.  The CWH8 Gene Encodes a Dolichyl Pyrophosphate Phosphatase with a Luminally Oriented Active Site in the Endoplasmic Reticulum of Saccharomyces cerevisiae * , 2001, The Journal of Biological Chemistry.

[38]  M Aldea,et al.  Whi3 binds the mRNA of the G1 cyclin CLN3 to modulate cell fate in budding yeast. , 2001, Genes & development.

[39]  S. Chávez,et al.  Hpr1 Is Preferentially Required for Transcription of Either Long or G+C-Rich DNA Sequences in Saccharomyces cerevisiae , 2001, Molecular and Cellular Biology.

[40]  H. Fan,et al.  High-Copy-Number Expression of Sub2p, a Member of the RNA Helicase Superfamily, Suppresses hpr1-Mediated Genomic Instability , 2001, Molecular and Cellular Biology.

[41]  J. Fridovich-Keil,et al.  The brefeldin A resistance protein Bfr1p is a component of polyribosome-associated mRNP complexes in yeast. , 2001, Nucleic acids research.

[42]  Sapna Mehta,et al.  Reciprocal Regulation of Anaerobic and Aerobic Cell Wall Mannoprotein Gene Expression in Saccharomyces cerevisiae , 2001, Journal of bacteriology.

[43]  G. Fink,et al.  Bakers' yeast, a model for fungal biofilm formation. , 2001, Science.

[44]  Trevor Lithgow,et al.  A protein complex containing Tho2, Hpr1, Mft1 and a novel protein, Thp2, connects transcription elongation with mitotic recombination in Saccharomyces cerevisiae , 2000, The EMBO journal.

[45]  S. Palecek,et al.  Genetic analysis reveals that FLO11 upregulation and cell polarization independently regulate invasive growth in Saccharomyces cerevisiae. , 2000, Genetics.

[46]  G. Fink,et al.  A Saccharomyces gene family involved in invasive growth, cell-cell adhesion, and mating. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[47]  R. Young,et al.  Transcription of eukaryotic protein-coding genes. , 2000, Annual review of genetics.

[48]  K. Nasmyth,et al.  Whose end is destruction: cell division and the anaphase-promoting complex. , 1999, Genes & development.

[49]  J. C. Kapteyn,et al.  Cell wall dynamics in yeast. , 1999, Current opinion in microbiology.

[50]  M. Hampsey,et al.  A general requirement for the Sin3-Rpd3 histone deacetylase complex in regulating silencing in Saccharomyces cerevisiae. , 1999, Genetics.

[51]  É. Massé,et al.  Escherichia coli DNA Topoisomerase I Inhibits R-loop Formation by Relaxing Transcription-induced Negative Supercoiling* , 1999, The Journal of Biological Chemistry.

[52]  É. Massé,et al.  Relaxation of Transcription-induced Negative Supercoiling Is an Essential Function of Escherichia coli DNA Topoisomerase I* , 1999, The Journal of Biological Chemistry.

[53]  P. Hieter,et al.  Ctf19p: A Novel Kinetochore Protein in Saccharomyces cerevisiae and a Potential Link between the Kinetochore and Mitotic Spindle , 1999, The Journal of cell biology.

[54]  M. Rieger,et al.  The Saccharomyces cerevisiae CWH8 gene is required for full levels of dolichol-linked oligosaccharides in the endoplasmic reticulum and for efficient N-glycosylation. , 1999, Glycobiology.

[55]  V. Olkkonen,et al.  SEM1, a homologue of the split hand/split foot malformation candidate gene Dss1, regulates exocytosis and pseudohyphal differentiation in yeast. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[56]  Andrés Aguilera,et al.  A novel yeast gene, THO2, is involved in RNA pol II transcription and provides new evidence for transcriptional elongation‐associated recombination , 1998, The EMBO journal.

[57]  S. Chávez,et al.  The yeast HPR1 gene has a functional role in transcriptional elongation that uncovers a novel source of genome instability. , 1997, Genes & development.

[58]  F. Prado,et al.  Recombination between DNA repeats in yeast hpr1Δ cells is linked to transcription elongation , 1997, The EMBO journal.

[59]  G. Fink,et al.  Saccharomyces cerevisiae S288C has a mutation in FLO8, a gene required for filamentous growth. , 1996, Genetics.

[60]  I. S. Pretorius,et al.  Muc1, a mucin-like protein that is regulated by Mss10, is critical for pseudohyphal differentiation in yeast. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[61]  R. Sternglanz,et al.  Mutations in GCR3, a gene involved in the expression of glycolytic genes in Saccharomyces cerevisiae, suppress the temperature-sensitive growth of hpr1 mutants. , 1996, Genetics.

[62]  H. Fan,et al.  Mutations in the RNA polymerase II transcription machinery suppress the hyperrecombination mutant hpr1 delta of Saccharomyces cerevisiae. , 1996, Genetics.

[63]  M. Christman,et al.  Isolation of mutants of Saccharomyces cerevisiae requiring DNA topoisomerase I. , 1995, Genetics.

[64]  R. Müller,et al.  Yeast vectors for the controlled expression of heterologous proteins in different genetic backgrounds. , 1995, Gene.

[65]  G. Fink,et al.  Elements of a single MAP kinase cascade in Saccharomyces cerevisiae mediate two developmental programs in the same cell type: mating and invasive growth. , 1994, Genes & development.

[66]  P. Lipke,et al.  Is there a role for GPIs in yeast cell-wall assembly? , 1994, Trends in cell biology.

[67]  H. Klein,et al.  HPR1, a novel yeast gene that prevents intrachromosomal excision recombination, shows carboxy-terminal homology to the Saccharomyces cerevisiae TOP1 gene , 1990, Molecular and cellular biology.

[68]  R. A. Kim,et al.  A subthreshold level of DNA topoisomerases leads to the excision of yeast rDNA as extrachromosomal rings , 1989, Cell.

[69]  Gerald R. Fink,et al.  Mitotic recombination in the rDNA of S. cerevisiae is suppressed by the combined action of DNA topoisomerases I and II , 1988, Cell.

[70]  R. Sternglanz,et al.  Transcription-dependent DNA supercoiling in yeast DNA topoisomerase mutants , 1988, Cell.

[71]  J. Wang,et al.  Supercoiling of the DNA template during transcription. , 1987, Proceedings of the National Academy of Sciences of the United States of America.

[72]  B. Bainbridge,et al.  Genetics , 1981, Experientia.