Autotrophic Microbe Metagenomes and Metabolic Pathways Differentiate Adjacent Red Sea Brine Pools
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Yong Wang | Salim Bougouffa | Pei-Yuan Qian | Huiluo Cao | Guishan Zhang | H. Cao | S. Bougouffa | P. Qian | A. Al-Suwailem | O. Lee | Yong Wang | Abdulaziz Al-Suwailem | On On Lee | Guishan Zhang | Huiluo Cao
[1] Arcady Mushegian,et al. Metagenomic Analysis of Hadopelagic Microbial Assemblages Thriving at the Deepest Part of Mediterranean Sea, Matapan-vavilov Deepe Mi_2827 1..16 , 2022 .
[2] Vladimir B. Bajic,et al. Unique Prokaryotic Consortia in Geochemically Distinct Sediments from Red Sea Atlantis II and Discovery Deep Brine Pools , 2012, PloS one.
[3] Ryan A. Lesniewski,et al. The metatranscriptome of a deep-sea hydrothermal plume is dominated by water column methanotrophs and lithotrophs , 2012, The ISME Journal.
[4] A. Bower,et al. Vertical, horizontal, and temporal changes in temperature in the Atlantis II and Discovery hot brine pools, Red Sea , 2012 .
[5] Frank Oliver Glöckner,et al. Unveiling microbial life in the new deep-sea hypersaline Lake Thetis. Part II: a metagenomic study. , 2012, Environmental microbiology.
[6] E. van Heerden,et al. Unconventional lateral gene transfer in extreme thermophilic bacteria. , 2011, International microbiology : the official journal of the Spanish Society for Microbiology.
[7] M. Nei,et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. , 2011, Molecular biology and evolution.
[8] S. Schuster,et al. Integrative analysis of environmental sequences using MEGAN4. , 2011, Genome research.
[9] Antoine Danchin,et al. Hydrothermally generated aromatic compounds are consumed by bacteria colonizing in Atlantis II Deep of the Red Sea , 2011, The ISME Journal.
[10] B. Tebo,et al. Microbial diversity and biogeochemistry of the Guaymas Basin deep-sea hydrothermal plume. , 2010, Environmental microbiology.
[11] Limin Fu,et al. Artificial and natural duplicates in pyrosequencing reads of metagenomic data , 2010, BMC Bioinformatics.
[12] Natalia N. Ivanova,et al. The Complete Multipartite Genome Sequence of Cupriavidus necator JMP134, a Versatile Pollutant Degrader , 2010, PloS one.
[13] Stefan Vogt,et al. Mechanisms of gold biomineralization in the bacterium Cupriavidus metallidurans , 2009, Proceedings of the National Academy of Sciences.
[14] K. Knittel,et al. Anaerobic oxidation of methane: progress with an unknown process. , 2009, Annual review of microbiology.
[15] W. D. de Vos,et al. Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine , 2009, PloS one.
[16] V. Orphan,et al. Manganese- and Iron-Dependent Marine Methane Oxidation , 2009, Science.
[17] Ying Huang,et al. Bioinformatics Applications Note Identification of Ribosomal Rna Genes in Metagenomic Fragments , 2022 .
[18] James R. Cole,et al. The Ribosomal Database Project: improved alignments and new tools for rRNA analysis , 2008, Nucleic Acids Res..
[19] D. Pieper,et al. Metabolic Reconstruction Ofaromatic Compounds Degradation from the Genome of the Amazing Pollutant-degrading Bacterium Cupriavidus Necator Jmp134 , 2007 .
[20] Rudolf Amann,et al. Diversity and Abundance of Aerobic and Anaerobic Methane Oxidizers at the Haakon Mosby Mud Volcano, Barents Sea , 2007, Applied and Environmental Microbiology.
[21] D. Valentine,et al. Diversity of Archaea in Marine Sediments from Skan Bay, Alaska, Including Cultivated Methanogens, and Description of Methanogenium boonei sp. nov , 2006, Applied and Environmental Microbiology.
[22] Tracy Palmer,et al. Secretion by numbers: protein traffic in prokaryotes , 2006, Molecular microbiology.
[23] P. Vandamme,et al. Taxonomy of the genus Cupriavidus: a tale of lost and found. , 2004, International journal of systematic and evolutionary microbiology.
[24] W. Shi,et al. Chemotaxis-guided movements in bacteria. , 2004, Critical reviews in oral biology and medicine : an official publication of the American Association of Oral Biologists.
[25] T. Friedrich,et al. The Escherichia coli NADH:Ubiquinone Oxidoreductase (Complex I) Is a Primary Proton Pump but May Be Capable of Secondary Sodium Antiport* , 2004, Journal of Biological Chemistry.
[26] N. Watmough,et al. The bacterial cytochrome cbb3 oxidases. , 2004, Biochimica et biophysica acta.
[27] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[28] P. Stoffers,et al. High-resolution methane profiles across anoxic brine-seawater boundaries in the Atlantis-II, Discovery, and Kebrit Deeps (Red Sea) , 2003 .
[29] E. Delong,et al. Identification of Methyl Coenzyme M Reductase A (mcrA) Genes Associated with Methane-Oxidizing Archaea , 2003, Applied and Environmental Microbiology.
[30] K. Stetter,et al. Autotrophic CO2 fixation pathways in archaea (Crenarchaeota) , 2003, Archives of Microbiology.
[31] J. Baross,et al. Temporal Changes in Archaeal Diversity and Chemistry in a Mid-Ocean Ridge Subseafloor Habitat , 2002, Applied and Environmental Microbiology.
[32] Michael Y. Galperin,et al. Sodium Ion Cycle in Bacterial Pathogens: Evidence from Cross-Genome Comparisons , 2001, Microbiology and Molecular Biology Reviews.
[33] Susumu Goto,et al. KEGG: Kyoto Encyclopedia of Genes and Genomes , 2000, Nucleic Acids Res..
[34] F. Widdel,et al. Methane formation from long-chain alkanes by anaerobic microorganisms , 1999, Nature.
[35] D. Botstein,et al. Cluster analysis and display of genome-wide expression patterns. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[36] P. Stoffers,et al. Hydrographic structure of brine-filled deeps in the Red Sea—new results from the Shaban, Kebrit, Atlantis II, and Discovery Deep , 1998 .
[37] P. Stoffers,et al. Methane in Red Sea brines , 1998 .
[38] P. Anschutz,et al. Heat and salt fluxes in the Atlantis II Deep (Red Sea) , 1996 .
[39] C. Ramboz,et al. The anhydrite saturation index of the ponded brines and sediment pore waters of the Red Sea deeps , 1996 .
[40] P. Anschutz,et al. New stratification in the hydrothermal brine system of the Atlantis II Deep, Red Sea , 1995 .
[41] James G. Ferry,et al. Methanogenesis : Ecology, Physiology, Biochemistry and Genetics , 1994 .
[42] J. Lipscomb. Biochemistry of the soluble methane monooxygenase. , 1994, Annual review of microbiology.
[43] Stephen H. Zinder,et al. Physiological Ecology of Methanogens , 1993 .
[44] C. Ramboz,et al. Geyser-type discharge in Atlantis II Deep, Red Sea; evidence of boiling from fluid inclusions in epigenetic anhydrite , 1988 .
[45] B. B. J�rgensen,et al. Volatile Fatty Acids and Hydrogen as Substrates for Sulfate-Reducing Bacteria in Anaerobic Marine Sediment , 1981, Applied and environmental microbiology.
[46] I. West,et al. Proton/sodium ion antiport in Escherichia coli. , 1974, The Biochemical journal.
[47] M. Hartmann,et al. Detailed temperature structure of the hot brines in the Atlantis II Deep area (Red Sea) , 1973 .
[48] R. Girdler. A discussion on the structure and evolution of the Red Sea and the nature of the Red Sea, Gulf of Aden and Ethiopia rift junction - A review of Red Sea heat flow , 1970, Philosophical Transactions of the Royal Society of London. Series A, Mathematical and Physical Sciences.
[49] J. Turner,et al. A Physical Interpretation of the Observations of Hot Brine Layers in the Red Sea , 1969 .
[50] D. Ross,et al. Third Brine Pool in the Red Sea , 1967, Nature.
[51] H. Kornberg. The role and control of the glyoxylate cycle in Escherichia coli. , 1966, The Biochemical journal.
[52] A. Miller,et al. Hot brines and recent iron deposits in deeps of the Red Sea , 1966 .
[53] J. Crease,et al. Hot Salty Water at the Bottom of the Red Sea , 1965, Nature.
[54] Supplemental Information 2: Kyoto Encyclopedia of genes and genomes. , 2022 .