HIV RNA packaging and lentivirus-based vectors.

Since the mid-1990s, the number of publications on lentivirus-based vectors has expanded dramatically as people have realized the opportunity that they represent. High-titer helper-virus free transfer of genes to nondividing cells is a reality and it can only be a short time before clinical trials are initiated. The most efficient vector to date appears to be HIV-1 and it is no coincidence that this is the virus in which there is the greatest theoretical understanding of the encapsidation process and viral assembly. Basic studies in the other viruses are at an earlier stage and this is reflected to some extent in their relative inefficiency. Emphasis is placed in some publications on non-HIV-based vector systems having the additional safety feature of a viral vector not based on a human pathogen. As yet, this is largely a cosmetic advantage in that no system would be used which was capable of regenerating a full-length wild-type HIV and the vectors all have single round replication kinetics. More important will be elucidation of the mechanism of packaging in the different lentiviruses. Cis and trans packaging preferences may influence efficiency. Accurate delineation of packaging signals will be important. Most influential, however, will be a deeper understanding of all the viral and cellular factors involved in the packaging pathway.

[1]  Y. Ron,et al.  Regulated lentiviral packaging cell line devoid of most viral cis-acting sequences. , 1998, Virology.

[2]  A. Lever,et al.  Development of cell lines stably expressing human immunodeficiency virus type 1 proteins for studies in encapsidation and gene transfer. , 1998, The Journal of general virology.

[3]  I. K. Berezesky,et al.  Deficiency of 60 to 70S RNA in Murine Leukemia Virus Particles Assembled in Cells Treated with Actinomycin D , 1974, Journal of virology.

[4]  C. Ehresmann,et al.  A dual role of the putative RNA dimerization initiation site of human immunodeficiency virus type 1 in genomic RNA packaging and proviral DNA synthesis , 1996, Journal of virology.

[5]  J. Luban,et al.  Human immunodeficiency virus type 1 Vpr arrests the cell cycle in G2 by inhibiting the activation of p34cdc2-cyclin B , 1995, Journal of virology.

[6]  B. Cullen,et al.  Regulatory pathways governing HIV-1 replication , 1989, Cell.

[7]  S. Arya,et al.  Human immunodeficiency virus type 2 (HIV-2): packaging signal and associated negative regulatory element. , 1995, Human gene therapy.

[8]  J. Sodroski,et al.  Construction and use of a replication-competent human immunodeficiency virus (HIV-1) that expresses the chloramphenicol acetyltransferase enzyme. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[9]  A. Kingsman,et al.  Minimal Requirement for a Lentivirus Vector Based on Human Immunodeficiency Virus Type 1 , 1998, Journal of Virology.

[10]  A. Kingsman,et al.  Stable gene transfer to the nervous system using a non-primate lentiviral vector , 1999, Gene Therapy.

[11]  E. Westhof,et al.  Non-canonical interactions in a kissing loop complex: the dimerization initiation site of HIV-1 genomic RNA. , 1997, Journal of molecular biology.

[12]  S. Goff,et al.  Binding of the Human Immunodeficiency Virus Type 1 Gag Protein to the Viral RNA Encapsidation Signal in the Yeast Three-Hybrid System , 1998, Journal of Virology.

[13]  M. Harris From negative factor to a critical role in virus pathogenesis: the changing fortunes of Nef. , 1996, The Journal of general virology.

[14]  P. Borer,et al.  Three-dimensional folding of an RNA hairpin required for packaging HIV-1. , 1998, Journal of molecular biology.

[15]  A. Panganiban,et al.  Simian immunodeficiency virus RNA is efficiently encapsidated by human immunodeficiency virus type 1 particles , 1993, Journal of virology.

[16]  S. Karlsson,et al.  Transduction of nondividing cells using pseudotyped defective high-titer HIV type 1 particles. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[17]  É. Cohen,et al.  The human immunodeficiency virus type 1 5' packaging signal structure affects translation but does not function as an internal ribosome entry site structure , 1996, Journal of virology.

[18]  Luigi Naldini,et al.  Multiply attenuated lentiviral vector achieves efficient gene delivery in vivo , 1997, Nature Biotechnology.

[19]  J. Sodroski,et al.  Identification of a sequence required for efficient packaging of human immunodeficiency virus type 1 RNA into virions , 1989, Journal of virology.

[20]  A. Lever,et al.  Location of cis-acting signals important for RNA encapsidation in the leader sequence of human immunodeficiency virus type 2 , 1997, Journal of virology.

[21]  R. Vile,et al.  Retroviruses as vectors. , 1995, British medical bulletin.

[22]  C. Ehresmann,et al.  Dimerization of human immunodeficiency virus type 1 RNA involves sequences located upstream of the splice donor site. , 1994, Nucleic acids research.

[23]  S. Goff,et al.  5' regions of HIV-1 RNAs are not sufficient for encapsidation: implications for the HIV-1 packaging signal. , 1995, Virology.

[24]  A. Cann,et al.  Evidence that a kissing loop structure facilitates genomic RNA dimerisation in HIV-1. , 1996, Journal of molecular biology.

[25]  A. Lever,et al.  Helper virus-free transfer of human immunodeficiency virus type 1 vectors. , 1995, The Journal of general virology.

[26]  S. Arya,et al.  Human immunodeficiency virus type 2 lentivirus vectors for gene transfer: expression and potential for helper virus-free packaging. , 1998, Human gene therapy.

[27]  E. Hunter,et al.  Functional Analysis of the Core Human Immunodeficiency Virus Type 1 Packaging Signal in a Permissive Cell Line , 1998, Journal of Virology.

[28]  A. Panganiban,et al.  Position dependence of functional hairpins important for human immunodeficiency virus type 1 RNA encapsidation in vivo , 1997, Journal of virology.

[29]  A. Miller,et al.  Retroviral RNA packaging: sequence requirements and implications. , 1990, Current topics in microbiology and immunology.

[30]  M. Heřmánková,et al.  A conditionally replicating HIV-1 vector interferes with wild-type HIV-1 replication and spread. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[31]  M. Emerman,et al.  A nuclear localization signal within HIV-1 matrix protein that governs infection of non-dividing cells , 1993, Nature.

[32]  V. Pathak,et al.  E- vectors: development of novel self-inactivating and self-activating retroviral vectors for safer gene therapy , 1995, Journal of virology.

[33]  T. Klimkait,et al.  The human immunodeficiency virus type 1-specific protein vpu is required for efficient virus maturation and release , 1990, Journal of virology.

[34]  F. Gage,et al.  Bcl-xL protects adult septal cholinergic neurons from axotomized cell death. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[35]  A. Lever,et al.  Packaging of human immunodeficiency virus type 1 RNA requires cis-acting sequences outside the 5' leader region , 1993, Journal of virology.

[36]  F. Gage,et al.  Stable and efficient gene transfer into the retina using an HIV-based lentiviral vector. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[37]  J. Kaye,et al.  Nonreciprocal Packaging of Human Immunodeficiency Virus Type 1 and Type 2 RNA: a Possible Role for the p2 Domain of Gag in RNA Encapsidation , 1998, Journal of Virology.

[38]  Fred H. Gage,et al.  Development of a Self-Inactivating Lentivirus Vector , 1998, Journal of Virology.

[39]  C. Aiken Pseudotyping human immunodeficiency virus type 1 (HIV-1) by the glycoprotein of vesicular stomatitis virus targets HIV-1 entry to an endocytic pathway and suppresses both the requirement for Nef and the sensitivity to cyclosporin A , 1997, Journal of virology.

[40]  J. Orenstein,et al.  A mutant of human immunodeficiency virus with reduced RNA packaging and abnormal particle morphology , 1990, Journal of virology.

[41]  A. Gronenborn,et al.  Identification of a binding site for the human immunodeficiency virus type 1 nucleocapsid protein. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[42]  Thomas L. James,et al.  Structure of the dimer a initiation complex of HIV-1 genomic RNA , 1998, Nature Structural Biology.

[43]  S. Goff,et al.  Analysis of binding elements in the human immunodeficiency virus type 1 genomic RNA and nucleocapsid protein. , 1994, Virology.

[44]  A. Lever,et al.  The human immunodeficiency virus type 1 packaging signal and major splice donor region have a conserved stable secondary structure , 1992, Journal of virology.

[45]  Y. Ron,et al.  Inducible human immunodeficiency virus type 1 packaging cell lines , 1996, Journal of virology.

[46]  M. Emerman,et al.  The Vpr protein of human immunodeficiency virus type 1 influences nuclear localization of viral nucleic acids in nondividing host cells. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[47]  C. Parolin,et al.  Analysis in human immunodeficiency virus type 1 vectors of cis-acting sequences that affect gene transfer into human lymphocytes , 1994, Journal of virology.

[48]  C. Sassetti,et al.  RNA secondary structure and binding sites for gag gene products in the 5' packaging signal of human immunodeficiency virus type 1 , 1995, Journal of virology.

[49]  M. Hammarskjöld,et al.  The effect of viral regulatory protein expression on gene delivery by human immunodeficiency virus type 1 vectors produced in stable packaging cell lines , 1997, Journal of virology.

[50]  L. Arthur,et al.  Noninfectious human immunodeficiency virus type 1 mutants deficient in genomic RNA , 1990, Journal of virology.

[51]  R. Vigne,et al.  Properties of Visna Virus Particles Harvested at Short Time Intervals: RNA Content, Infectivity, and Ultrastructure , 1975, Journal of virology.

[52]  A. Das,et al.  A conserved hairpin motif in the R-U5 region of the human immunodeficiency virus type 1 RNA genome is essential for replication , 1997, Journal of virology.

[53]  E. Poeschla,et al.  Efficient transduction of nondividing human cells by feline immunodeficiency virus lentiviral vectors , 1998, Nature Medicine.

[54]  D. Trono,et al.  Role of the karyopherin pathway in human immunodeficiency virus type 1 nuclear import , 1996, Journal of virology.

[55]  W. Marasco,et al.  Intrabody-mediated knockout of the high-affinity IL-2 receptor in primary human T cells using a bicistronic lentivirus vector , 1998, Gene Therapy.

[56]  J. Wilson,et al.  Lentiviral vectors for gene therapy of cystic fibrosis. , 1997, Human gene therapy.

[57]  E. Hunter,et al.  Secondary structure model of the Mason-Pfizer monkey virus 5' leader sequence: identification of a structural motif common to a variety of retroviruses , 1995, Journal of virology.

[58]  J. Olsen Gene transfer vectors derived from equine infectious anemia virus , 1998, Gene Therapy.

[59]  S. Matsushita,et al.  Gene therapy for adult T cell leukemia using human immunodeficiency virus vector carrying the thymidine kinase gene of herpes simplex virus type 1. , 1996, Human gene therapy.

[60]  R. Young,et al.  Mutations of RNA and protein sequences involved in human immunodeficiency virus type 1 packaging result in production of noninfectious virus , 1990, Journal of virology.

[61]  I. Weissman,et al.  HIV, but not murine leukemia virus, vectors mediate high efficiency gene transfer into freshly isolated G0/G1 human hematopoietic stem cells. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[62]  A. Lever,et al.  cis-acting sequences involved in human immunodeficiency virus type 1 RNA packaging , 1995, Journal of virology.

[63]  M. Brendel,et al.  Transduction of non-dividing adult human pancreatic beta cells by an integrating lentiviral vector , 1998, Diabetologia.

[64]  R. Swanstrom,et al.  Synthesis, Assembly, and Processing of Viral Proteins , 1997 .

[65]  R. Dornburg,et al.  Improved self-inactivating retroviral vectors derived from spleen necrosis virus , 1994, Journal of virology.

[66]  W. Fu,et al.  Maturation of dimeric viral RNA of Moloney murine leukemia virus , 1993, Journal of virology.

[67]  F. Cosset,et al.  Retroviral retargeting by envelopes expressing an N-terminal binding domain , 1995, Journal of virology.

[68]  D. Trono,et al.  Self-Inactivating Lentivirus Vector for Safe and Efficient In Vivo Gene Delivery , 1998, Journal of Virology.

[69]  D. Peterson,et al.  Sustained expression of genes delivered directly into liver and muscle by lentiviral vectors , 1997, Nature Genetics.

[70]  B. Berkhout Structure and function of the human immunodeficiency virus leader RNA. , 1996, Progress in nucleic acid research and molecular biology.

[71]  D. Sen,et al.  Mode of dimerization of HIV-1 genomic RNA. , 1993, Biochemistry.

[72]  F. Cosset,et al.  Improvement of retroviral retargeting by using amino acid spacers between an additional binding domain and the N terminus of Moloney murine leukemia virus SU , 1996, Journal of virology.

[73]  J. Kjems,et al.  Mapping the RNA binding sites for human immunodeficiency virus type-1 gag and NC proteins within the complete HIV-1 and -2 untranslated leader regions. , 1998, Nucleic acids research.

[74]  H. Kräusslich Specific inhibitor of human immunodeficiency virus proteinase prevents the cytotoxic effects of a single-chain proteinase dimer and restores particle formation , 1992, Journal of virology.

[75]  M Laughrea,et al.  A 19-nucleotide sequence upstream of the 5' major splice donor is part of the dimerization domain of human immunodeficiency virus 1 genomic RNA. , 1994, Biochemistry.

[76]  F. Wong-Staal,et al.  Transduction of human macrophages using a stable HIV-1/HIV-2-derived gene delivery system , 1998, Gene Therapy.

[77]  K. Shannon,et al.  Infection of human fetal cardiac myocytes by a human immunodeficiency virus-1-derived vector. , 1998, Circulation research.

[78]  L Naldini,et al.  Highly efficient and sustained gene transfer in adult neurons with a lentivirus vector , 1997, Journal of virology.

[79]  G. Varani,et al.  The major HIV-1 packaging signal is an extended bulged stem loop whose structure is altered on interaction with the Gag polyprotein. , 2000, Journal of molecular biology.

[80]  Y. Chebloune,et al.  Defective RNA packaging is responsible for low transduction efficiency of CAEV-based vectors} , 1998, Archives of Virology.

[81]  F. Gage,et al.  In Vivo Gene Delivery and Stable Transduction of Nondividing Cells by a Lentiviral Vector , 1996, Science.

[82]  P. Kantoff,et al.  Self-inactivating retroviral vectors designed for transfer of whole genes into mammalian cells. , 1986, Proceedings of the National Academy of Sciences of the United States of America.

[83]  N. Sarvetnick,et al.  Lentivirus-mediated transduction of islet grafts with interleukin 4 results in sustained gene expression and protection from insulitis. , 1998, Human gene therapy.

[84]  T. Hope,et al.  HIV-1 infection of nondividing cells through the recognition of integrase by the importin/karyopherin pathway. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[85]  B. Berkhout,et al.  Role of the DIS hairpin in replication of human immunodeficiency virus type 1 , 1996, Journal of virology.

[86]  I. Chen,et al.  High-efficiency gene transfer into CD34+ cells with a human immunodeficiency virus type 1-based retroviral vector pseudotyped with vesicular stomatitis virus envelope glycoprotein G , 1996, Journal of virology.

[87]  M. Rosbash,et al.  A high affinity binding site for the HIV-1 nucleocapsid protein. , 1997, Nucleic acids research.

[88]  J. Sodroski,et al.  Functional regions of the envelope glycoprotein of human immunodeficiency virus type 1. , 1987, Science.

[89]  J. Maizel,et al.  Novel GACG-hairpin pair motif in the 5' untranslated region of type C retroviruses related to murine leukemia virus , 1992, Journal of virology.

[90]  T. Shimada,et al.  Two-step gene transfer using an adenoviral vector carrying the CD4 gene and human immunodeficiency viral vectors. , 1996, Human gene therapy.

[91]  J. Luban,et al.  Mapping of functionally important residues of a cysteine-histidine box in the human immunodeficiency virus type 1 nucleocapsid protein , 1993, Journal of virology.

[92]  A. Lever,et al.  Retroviral RNA dimer linkage. , 1998, The Journal of general virology.

[93]  P. Brown,et al.  Human Immunodeficiency Virus Type 1 Vectors Efficiently Transduce Human Hematopoietic Stem Cells , 1998, Journal of Virology.

[94]  T. Parslow,et al.  Mutant human immunodeficiency virus type 1 genomes with defects in RNA dimerization or encapsidation , 1997, Journal of virology.

[95]  J. D. Greenwood,et al.  Nucleotide sequence and biological properties of a pathogenic proviral molecular clone of neurovirulent visna virus. , 1993, Virology.

[96]  E. Poeschla,et al.  Identification of a Human Immunodeficiency Virus Type 2 (HIV-2) Encapsidation Determinant and Transduction of Nondividing Human Cells by HIV-2-Based Lentivirus Vectors , 1998, Journal of Virology.

[97]  J. Sodroski,et al.  Gene transfer into human lymphocytes by a defective human immunodeficiency virus type 1 vector , 1991, Journal of virology.

[98]  S. Spector,et al.  Human immunodeficiency virus pseudotypes with expanded cellular and species tropism , 1990, Journal of virology.

[99]  Tal Kafri,et al.  A Packaging Cell Line for Lentivirus Vectors , 1999, Journal of Virology.

[100]  P. Borer,et al.  Structure of the HIV-1 nucleocapsid protein bound to the SL3 psi-RNA recognition element. , 1998, Science.

[101]  D O Morgan,et al.  Human immunodeficiency virus type 1 viral protein R (Vpr) arrests cells in the G2 phase of the cell cycle by inhibiting p34cdc2 activity , 1995, Journal of virology.

[102]  A. Panganiban,et al.  The human immunodeficiency virus type 1 encapsidation site is a multipartite RNA element composed of functional hairpin structures , 1996, Journal of virology.

[103]  D. Burke,et al.  A human immunodeficiency virus type 1 (HIV-1)-based retroviral vector system utilizing stable HIV-1 packaging cell lines , 1994, Journal of virology.

[104]  R. Gorelick,et al.  HIV-1 nucleocapsid protein induces "maturation" of dimeric retroviral RNA in vitro. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[105]  S. Arya,et al.  Towards developing HIV‐2 lentivirus‐based retroviral vectors for gene therapy: Dual gene expression in the context of HIV‐2 LTR and Tat , 1998, Journal of medical virology.

[106]  K. Moelling,et al.  Specific binding of HIV‐1 nucleocapsid protein to PSI RNA in vitro requires N‐terminal zinc finger and flanking basic amino acid residues. , 1994, The EMBO journal.

[107]  J. Kaye,et al.  Human Immunodeficiency Virus Types 1 and 2 Differ in the Predominant Mechanism Used for Selection of Genomic RNA for Encapsidation , 1999, Journal of Virology.

[108]  C. Ehresmann,et al.  Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[109]  I. Macreadie,et al.  A domain of human immunodeficiency virus type 1 Vpr containing repeated H(S/F)RIG amino acid motifs causes cell growth arrest and structural defects. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[110]  T. Parslow,et al.  Genetic Dissociation of the Encapsidation and Reverse Transcription Functions in the 5′ R Region of Human Immunodeficiency Virus Type 1 , 1999, Journal of Virology.

[111]  W. Fu,et al.  Characterization of human immunodeficiency virus type 1 dimeric RNA from wild-type and protease-defective virions , 1994, Journal of virology.