SELDI-TOF mass spectrometry for cancer biomarker discovery and serum proteomic diagnostics.

Proteomics is more than the identification of proteins that are altered in expression as a consequence of disease. Among the tools critical for the detection, treatment and monitoring of disease are biomarkers. The necessity for new methods to identify and validate biomarkers is underscored by the increased survival of patients diagnosed at early stages of cancer. Serum proteomic pattern diagnostics is a new technique in which proteomic signatures are used as a diagnostic classifier. Surface-enhanced laser desorption/ionization time-of-flight mass spectrometry has shown promise as a modality for biomarker discovery of early-stage cancers. Mass spectrometry-derived protein signatures have been modeled and are now moving into validation. Further sequencing of these key features can lead to new insights into disease etiology and intervention.

[1]  U Menon,et al.  Recent developments in ovarian cancer screening , 2000, Current opinion in obstetrics & gynecology.

[2]  A. Kantor Comprehensive phenotyping and biological marker discovery , 2002, Disease markers.

[3]  J. Ward,et al.  Identification of needs in biomarker research. , 1996, Environmental health perspectives.

[4]  Jeffrey S. Morris,et al.  Reproducibility of SELDI-TOF protein patterns in serum: comparing datasets from different experiments , 2004, Bioinform..

[5]  D. L. Diamond,et al.  Purification and characterization of the mammaglobin/lipophilin B complex, a promising diagnostic marker for breast cancer. , 2002, Biochemistry.

[6]  D. Tuveson,et al.  In Search of an Early Warning System for Pancreatic Cancer , 2003, Cancer biology & therapy.

[7]  Min Zhan,et al.  A data review and re-assessment of ovarian cancer serum proteomic profiling , 2003, BMC Bioinformatics.

[8]  Xiaodong Zhu,et al.  New serum biomarkers for detection of HBV-induced liver cirrhosis using SELDI protein chip technology. , 2004, World journal of gastroenterology.

[9]  Mark S. Boguski,et al.  Biomedical informatics for proteomics , 2003, Nature.

[10]  R. Bast,et al.  Elevation of serum CA125 in carcinomas of the fallopian tube, endometrium, and endocervix. , 1984, American journal of obstetrics and gynecology.

[11]  B. Rockhill Proteomic patterns in serum and identification of ovarian cancer , 2002, The Lancet.

[12]  P. Schellhammer,et al.  Boosted decision tree analysis of surface-enhanced laser desorption/ionization mass spectral serum profiles discriminates prostate cancer from noncancer patients. , 2002, Clinical chemistry.

[13]  Rebecca Sutphen,et al.  Lysophospholipids are potential biomarkers of ovarian cancer. , 2004, Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology.

[14]  Jeffrey S. Morris,et al.  Signal in noise: evaluating reported reproducibility of serum proteomic tests for ovarian cancer. , 2005, Journal of the National Cancer Institute.

[15]  Emanuel F. Petricoin,et al.  High-resolution serum proteomic features for ovarian cancer detection. , 2004 .

[16]  A. Vlahou,et al.  Diagnosis of Ovarian Cancer Using Decision Tree Classification of Mass Spectral Data , 2003, Journal of biomedicine & biotechnology.

[17]  S. Flibotte,et al.  Identification of serum amyloid A as a biomarker to distinguish prostate cancer patients with bone lesions. , 2005, Clinical chemistry.

[18]  G. Mills,et al.  Convergence of Multiple Signaling Cascades at Glycogen Synthase Kinase 3: Edg Receptor-Mediated Phosphorylation and Inactivation by Lysophosphatidic Acid through a Protein Kinase C-Dependent Intracellular Pathway , 2002, Molecular and Cellular Biology.

[19]  S. Weinberger,et al.  Recent advancements in surface‐enhanced laser desorption/ionization‐time of flight‐mass spectrometry , 2000, Electrophoresis.

[20]  Weijian Guo,et al.  Prediction of Pancreatic Cancer by Serum Biomarkers Using Surface-Enhanced Laser Desorption/Ionization-Based Decision Tree Classification , 2005, Oncology.

[21]  J. Celis,et al.  Proteomics in translational cancer research: toward an integrated approach. , 2003, Cancer cell.

[22]  G. Anderson,et al.  Molecular markers in colorectal cancer , 2002, The Lancet.

[23]  E. Petricoin,et al.  Serum proteomic patterns for detection of prostate cancer. , 2002, Journal of the National Cancer Institute.

[24]  Claudio Cobelli,et al.  Ovarian cancer identification based on dimensionality reduction for high-throughput mass spectrometry data , 2005, Bioinform..

[25]  Y. Yasui,et al.  An Automated Peak Identification/Calibration Procedure for High-Dimensional Protein Measures From Mass Spectrometers , 2003, Journal of biomedicine & biotechnology.

[26]  M. Deeg,et al.  Serum protein profiling by SELDI mass spectrometry: detection of multiple variants of serum amyloid alpha in renal cancer patients , 2004, Laboratory Investigation.

[27]  Ming Xu,et al.  Using tree analysis pattern and SELDI-TOF-MS to discriminate transitional cell carcinoma of the bladder cancer from noncancer patients. , 2005, European urology.

[28]  D. Fishman,et al.  Three-dimensional power Doppler ultrasound improves the diagnostic accuracy for ovarian cancer prediction. , 2001, Gynecologic oncology.

[29]  D. Chan,et al.  Proteomics and bioinformatics approaches for identification of serum biomarkers to detect breast cancer. , 2002, Clinical chemistry.

[30]  R. Bast,et al.  Three Biomarkers Identified from Serum Proteomic Analysis for the Detection of Early Stage Ovarian Cancer , 2004, Cancer Research.

[31]  R. Bast,et al.  Toward an optimal algorithm for ovarian cancer screening with longitudinal tumor markers , 1995, Cancer.

[32]  T. Hunter,et al.  Oncogenic kinase signalling , 2001, Nature.

[33]  J. Potter,et al.  A data-analytic strategy for protein biomarker discovery: profiling of high-dimensional proteomic data for cancer detection. , 2003, Biostatistics.

[34]  F. von Eggeling,et al.  Identification of proteins from colorectal cancer tissue by two-dimensional gel electrophoresis and SELDI mass spectrometry. , 2005, International journal of molecular medicine.

[35]  N Urban,et al.  Combining CA 125 and SMR serum markers for diagnosis and early detection of ovarian carcinoma. , 2004, Gynecologic oncology.

[36]  E. Petricoin,et al.  Use of proteomic patterns in serum to identify ovarian cancer , 2002, The Lancet.

[37]  Zhen Zhang,et al.  Quality control for SELDI analysis , 2005, Clinical chemistry and laboratory medicine.

[38]  Zhao Rui,et al.  Use of serological proteomic methods to find biomarkers associated with breast cancer , 2003, Proteomics.

[39]  Xiao-Ying Meng,et al.  Classification of cancer types by measuring variants of host response proteins using SELDI serum assays , 2005, International journal of cancer.

[40]  T. Veenstra,et al.  Characterization of the Low Molecular Weight Human Serum Proteome*S , 2003, Molecular & Cellular Proteomics.

[41]  F. Marshall Serum protein profiling by SELDI mass spectrometry: detection of multiple variants of serum amyloid alpha in renal cancer patients. , 2005, The Journal of urology.

[42]  Michèl Schummer,et al.  The HE4 (WFDC2) protein is a biomarker for ovarian carcinoma. , 2003, Cancer research.

[43]  D. Chan,et al.  Serum Diagnosis of Pancreatic Adenocarcinoma Using Surface-Enhanced Laser Desorption and Ionization Mass Spectrometry , 2004, Clinical Cancer Research.

[44]  T. Veenstra,et al.  The Human Plasma Proteome , 2004, Molecular & Cellular Proteomics.

[45]  P. Schellhammer,et al.  Serum protein fingerprinting coupled with a pattern-matching algorithm distinguishes prostate cancer from benign prostate hyperplasia and healthy men. , 2002, Cancer research.

[46]  R. Kryscio,et al.  Transvaginal sonography as a screening method for the detection of early ovarian cancer. , 1997, Gynecologic oncology.

[47]  E. Petricoin,et al.  SELDI-TOF-based serum proteomic pattern diagnostics for early detection of cancer. , 2004, Current opinion in biotechnology.

[48]  R. Bast,et al.  A radioimmunoassay using a monoclonal antibody to monitor the course of epithelial ovarian cancer. , 1983 .

[49]  D. Chan,et al.  Evaluation of serum protein profiling by surface-enhanced laser desorption/ionization time-of-flight mass spectrometry for the detection of prostate cancer: I. Assessment of platform reproducibility. , 2005, Clinical chemistry.

[50]  Ming Zhou,et al.  Cancer diagnosis using proteomic patterns , 2003, Expert review of molecular diagnostics.