Whole-Genome Sequencing for Routine Pathogen Surveillance in Public Health: a Population Snapshot of Invasive Staphylococcus aureus in Europe
暂无分享,去创建一个
Jukka Corander | Stephen D. Bentley | Julian Parkhill | Richard Goater | David M. Aanensen | Richard J. Goater | Caroline Colijn | Hajo Grundmann | Edward J. Feil | Brian G. Spratt | Matthew T. G. Holden | Jenny Åhman | Artemij Fedosejev | J. Corander | J. Parkhill | S. Bentley | L. Schouls | B. Spratt | A. Friedrich | D. Aanensen | E. Feil | H. Grundmann | M. Holden | G. Kahlmeter | C. Colijn | E. Matuschek | S. Castillo-Ramírez | Janina Dordel | Gunnar Kahlmeter | C. Yeats | Artemij Fedosejev | R. Goater | M. Chlebowicz | M. Heck | G. Pluister | R. Ruimy | J. Åhman | Janina Dordel | Raymond Ruimy | Alexander W. Friedrich | Max Heck | Santiago Castillo-Ramírez | Corin A. Yeats | Monika A. Chlebowicz | Leo Schouls | Gerlinde Pluister | Erika Matuschek | J. Dordel
[1] Jing Zhang,et al. WHO: draft global action plan on antimicrobial resistance , 2015 .
[2] L. Schouls,et al. The dynamic changes of dominant clones of Staphylococcus aureus causing bloodstream infections in the European region: results of a second structured survey. , 2014, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.
[3] Daniel J. Wilson,et al. Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus , 2014, Nature Communications.
[4] Christopher S. Stach,et al. Staphylococcal superantigens interact with multiple host receptors to cause serious diseases , 2014, Immunologic research.
[5] Julian Parkhill,et al. Molecular tracing of the emergence, diversification, and transmission of S. aureus sequence type 8 in a New York community , 2014, Proceedings of the National Academy of Sciences.
[6] Daniel J. Wilson,et al. Prediction of Staphylococcus aureus Antimicrobial Resistance by Whole-Genome Sequencing , 2014, Journal of Clinical Microbiology.
[7] Alexandros Stamatakis,et al. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies , 2014, Bioinform..
[8] G. Smith,et al. Rapid bacterial whole-genome sequencing to enhance diagnostic and public health microbiology. , 2013, JAMA internal medicine.
[9] Julian Parkhill,et al. A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic , 2013, Genome research.
[10] Jian Wang,et al. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler , 2012, GigaScience.
[11] K. Holt,et al. Global Phylogeny of Shigella sonnei Strains from Limited Single Nucleotide Polymorphisms (SNPs) and Development of a Rapid and Cost-Effective SNP-Typing Scheme for Strain Identification by High-Resolution Melting Analysis , 2012, Journal of Clinical Microbiology.
[12] Julian Parkhill,et al. Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak. , 2012, The New England journal of medicine.
[13] Julian Parkhill,et al. Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus , 2012, Proceedings of the National Academy of Sciences.
[14] Michael Otto,et al. MRSA epidemic linked to a quickly spreading colonization and virulence determinant , 2012, Nature Medicine.
[15] T. Ø. Jonassen,et al. Detection and characterisation of SCCmec remnants in multiresistant methicillin-susceptible Staphylococcus aureus causing a clonal outbreak in a Swedish county , 2012, European Journal of Clinical Microbiology & Infectious Diseases.
[16] Adeline R. Whitney,et al. Molecular differentiation of historic phage-type 80/81 and contemporary epidemic Staphylococcus aureus , 2011, Proceedings of the National Academy of Sciences.
[17] R. Cantón,et al. Co-resistance: an opportunity for the bacteria and resistance genes. , 2011, Current opinion in pharmacology.
[18] Julian Parkhill,et al. Meticillin-resistant Staphylococcus aureus with a novel mecA homologue in human and bovine populations in the UK and Denmark: a descriptive study , 2011, The Lancet. Infectious diseases.
[19] J. Burton,et al. Rapid Pneumococcal Evolution in Response to Clinical Interventions , 2011, Science.
[20] David R. Kelley,et al. Quake: quality-aware detection and correction of sequencing errors , 2010, Genome Biology.
[21] M. DePristo,et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. , 2010, Genome research.
[22] Christy J. Rand,et al. Complete Genome Sequence of Staphylococcus aureus Strain JKD6008, an ST239 Clone of Methicillin-Resistant Staphylococcus aureus with Intermediate-Level Vancomycin Resistance , 2010, Journal of bacteriology.
[23] Robert J. Moore,et al. Complete Genome Sequence of Staphylococcus aureus Strain JKD6159, a Unique Australian Clone of ST93-IV Community Methicillin-Resistant Staphylococcus aureus , 2010, Journal of bacteriology.
[24] Jason Hinds,et al. Evolutionary Genomics of Staphylococcus aureus Reveals Insights into the Origin and Molecular Basis of Ruminant Host Adaptation , 2010, Genome biology and evolution.
[25] C. DeLisi,et al. Phenotypic connections in surprising places , 2010, Genome Biology.
[26] Raphaël Leblois,et al. A Timescale for Evolution, Population Expansion, and Spatial Spread of an Emerging Clone of Methicillin-Resistant Staphylococcus aureus , 2010, PLoS pathogens.
[27] Julian Parkhill,et al. Evolution of MRSA During Hospital Transmission and Intercontinental Spread , 2010, Science.
[28] B. Spratt,et al. Geographic Distribution of Staphylococcus aureus Causing Invasive Infections in Europe: A Molecular-Epidemiological Analysis , 2010, PLoS medicine.
[29] M. Quail,et al. Genome Sequence of a Recently Emerged, Highly Transmissible, Multi-Antibiotic- and Antiseptic-Resistant Variant of Methicillin-Resistant Staphylococcus aureus, Sequence Type 239 (TW) , 2009, Journal of bacteriology.
[30] Miriam L. Land,et al. Trace: Tennessee Research and Creative Exchange Prodigal: Prokaryotic Gene Recognition and Translation Initiation Site Identification Recommended Citation Prodigal: Prokaryotic Gene Recognition and Translation Initiation Site Identification , 2022 .
[31] A. Rambaut,et al. Recent human-to-poultry host jump, adaptation, and pandemic spread of Staphylococcus aureus , 2009, Proceedings of the National Academy of Sciences.
[32] Adam P. Arkin,et al. FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix , 2009, Molecular biology and evolution.
[33] C. Wolz,et al. Diversity of Prophages in Dominant Staphylococcus aureus Clonal Lineages , 2009, Journal of bacteriology.
[34] M. Schijffelen,et al. Whole genome analysis of a livestock-associated methicillin-resistant Staphylococcus aureus ST398 isolate from a case of human endocarditis , 2010, BMC Genomics.
[35] J. Lindsay,et al. Staphylococcus aureus host specificity: comparative genomics of human versus animal isolates by multi-strain microarray. , 2008, Microbiology.
[36] Li Basuino,et al. The arginine catabolic mobile element and staphylococcal chromosomal cassette mec linkage: convergence of virulence and resistance in the USA300 clone of methicillin-resistant Staphylococcus aureus. , 2008, The Journal of infectious diseases.
[37] A. Koumaré,et al. The Carriage Population of Staphylococcus aureus from Mali Is Composed of a Combination of Pandemic Clones and the Divergent Panton-Valentine Leukocidin-Positive Genotype ST152 , 2008, Journal of bacteriology.
[38] O. Schneewind,et al. Genome Sequence of Staphylococcus aureus Strain Newman and Comparative Analysis of Staphylococcal Genomes: Polymorphism and Evolution of Two Major Pathogenicity Islands , 2007, Journal of bacteriology.
[39] G. Weinstock,et al. Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus , 2007, BMC Microbiology.
[40] James M. Musser,et al. Molecular Correlates of Host Specialization in Staphylococcus aureus , 2007, PloS one.
[41] H. Yuzawa,et al. Mutated Response Regulator graR Is Responsible for Phenotypic Conversion of Staphylococcus aureus from Heterogeneous Vancomycin-Intermediate Resistance to Vancomycin-Intermediate Resistance , 2007, Antimicrobial Agents and Chemotherapy.
[42] Alexander Tomasz,et al. Tracking the in vivo evolution of multidrug resistance in Staphylococcus aureus by whole-genome sequencing , 2007, Proceedings of the National Academy of Sciences.
[43] G. Sensabaugh,et al. Complete genome sequence of USA300, an epidemic clone of community-acquired meticillin-resistant Staphylococcus aureus , 2006, The Lancet.
[44] T. Louie,et al. Novel Multiplex PCR Assay for Detection of the Staphylococcal Virulence Marker Panton-Valentine Leukocidin Genes and Simultaneous Discrimination of Methicillin-Susceptible from -Resistant Staphylococci , 2006, Journal of Clinical Microbiology.
[45] A. Witney,et al. Microarrays Reveal that Each of the Ten Dominant Lineages of Staphylococcus aureus Has a Unique Combination of Surface-Associated and Regulatory Genes , 2006, Journal of bacteriology.
[46] B. Roe,et al. The Staphylococcus aureus NCTC 8325 Genome , 2006 .
[47] Samuel V. Angiuoli,et al. Insights on Evolution of Virulence and Resistance from the Complete Genome Analysis of an Early Methicillin-Resistant Staphylococcus aureus Strain and a Biofilm-Producing Methicillin-Resistant Staphylococcus epidermidis Strain , 2005, Journal of bacteriology.
[48] Paul Keim,et al. Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[49] M. Holden,et al. Staphylococcus aureus: superbug, super genome? , 2004, Trends in microbiology.
[50] B. Barrell,et al. Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[51] W. Hanage,et al. eBURST: Inferring Patterns of Evolutionary Descent among Clusters of Related Bacterial Genotypes from Multilocus Sequence Typing Data , 2004, Journal of bacteriology.
[52] D. Robinson,et al. Evolution of Staphylococcus aureus by Large Chromosomal Replacements , 2004, Journal of bacteriology.
[53] Y. Nagai,et al. Genome and virulence determinants of high virulence community-acquired MRSA , 2002, The Lancet.
[54] C. Walsh,et al. The evolutionary history of methicillin-resistant Staphylococcus aureus (MRSA) , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[55] Anton J. Enright,et al. An efficient algorithm for large-scale detection of protein families. , 2002, Nucleic acids research.
[56] Jean Thioulouse,et al. Relationships between Staphylococcus aureus Genetic Background, Virulence Factors, agr Groups (Alleles), and Human Disease , 2002, Infection and Immunity.
[57] M. Kanehisa,et al. Whole genome sequencing of meticillin-resistant Staphylococcus aureus , 2001, The Lancet.
[58] W. Witte,et al. Characteristics of a new epidemic MRSA in Germany ancestral to United Kingdom EMRSA 15. , 2001, International journal of medical microbiology : IJMM.
[59] E. Feil,et al. Population structure and evolutionary dynamics of pathogenic bacteria , 2000, BioEssays : news and reviews in molecular, cellular and developmental biology.
[60] B. Spratt,et al. Multilocus sequence typing for characterization of methicillin-resistant and methicillin-susceptible clones of Staphylococcus aureus. , 2000, Journal of clinical microbiology.
[61] F. Vandenesch,et al. Involvement of Enterotoxins G and I in Staphylococcal Toxic Shock Syndrome and Staphylococcal Scarlet Fever , 1999, Journal of Clinical Microbiology.
[62] P. Collignon,et al. Community-acquired meticillin-resistant Staphylococcus aureus in Australia , 1998, The Lancet.
[63] S. Tyler,et al. Detection of genes for enterotoxins, exfoliative toxins, and toxic shock syndrome toxin 1 in Staphylococcus aureus by the polymerase chain reaction , 1991, Journal of clinical microbiology.
[64] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[65] G. Schmid,et al. Identification and characterization of an exotoxin from Staphylococcus aureus associated with toxic-shock syndrome. , 1981, The Journal of infectious diseases.
[66] P. Courvalin,et al. Mechanisms of resistance to aminoglycosides. , 1977, The American journal of medicine.
[67] P. Courvalin,et al. Plasmid-Mediated Aminoglycoside Phosphotransferase of Broad Substrate Range That Phosphorylates Amikacin , 1977, Antimicrobial Agents and Chemotherapy.