Stray light characterization in a high-resolution imaging spectrometer designed for solar-induced fluorescence

New commercial-off-the-shelf imaging spectrometers promise the combination of high spatial and spectral resolution needed to retrieve solar induced fluorescence (SIF). Imaging at multiple wavelengths for individual plants and even individual leaves from low-altitude airborne or ground-based platforms has applications in agriculture and carbon-cycle science. Data from these instruments could provide insight into the status of the photosynthetic apparatus at scales of space and time not observable with tools based on gas exchange, and could support the calibration and validation activities of current and forthcoming space missions to quantify SIF. High-spectral resolution enables SIF retrieval from regions of strong telluric absorption by molecular oxygen, and also within numerous solar Fraunhofer lines in atmospheric windows not obscured by oxygen or water absorptions. Because the SIF signal can be < 5 % of background reflectance, rigorous instrument characterization and reduction of systematic error is necessary. Here we develop a spectral stray-light correction algorithm for a commercial off-the-shelf imaging spectrometer designed to quantify SIF. We use measurements from an optical parametric oscillator laser at 44 wavelengths to generate the spectral line-spread function and develop a spectral stray-light correction matrix using a novel exposure-bracketing method. The magnitude of spectral stray light in this instrument is small, but spectral stray light is detectable at all measured wavelengths. Examination of corrected line-spread functions indicates that the correction algorithm reduced spectral stray-light by 1 to 2 orders of magnitude.

[1]  Steven W. Brown,et al.  Characterization and correction of stray light in optical instruments , 2007, SPIE Remote Sensing.

[2]  Luis Alonso,et al.  Remote sensing of solar-induced chlorophyll fluorescence: Review of methods and applications , 2009 .

[3]  C. Frankenberg,et al.  OCO-2 advances photosynthesis observation from space via solar-induced chlorophyll fluorescence , 2017, Science.

[4]  I. Mammarella,et al.  Solar‐induced chlorophyll fluorescence exhibits a universal relationship with gross primary productivity across a wide variety of biomes , 2019, Global change biology.

[5]  J. Flexas,et al.  Steady-state chlorophyll fluorescence (Fs) measurements as a tool to follow variations of net CO2 assimilation and stomatal conductance during water-stress in C3 plants. , 2002, Physiologia plantarum.

[6]  George Burba Guidelines for Eddy Covariance Method , 2008 .

[7]  R. Colombo,et al.  Sun‐induced fluorescence – a new probe of photosynthesis: First maps from the imaging spectrometer HyPlant , 2015, Global change biology.

[8]  E. N. Stavros,et al.  ISS observations offer insights into plant function , 2017, Nature Ecology &Evolution.

[9]  J. Riggs,et al.  Advancing Terrestrial Ecosystem Science With a Novel Automated Measurement System for Sun‐Induced Chlorophyll Fluorescence for Integration With Eddy Covariance Flux Networks , 2019, Journal of Geophysical Research: Biogeosciences.

[10]  E. Middleton,et al.  First observations of global and seasonal terrestrial chlorophyll fluorescence from space , 2010 .

[11]  G. Asner,et al.  Spectral unmixing of vegetation, soil and dry carbon cover in arid regions: Comparing multispectral and hyperspectral observations , 2002 .

[12]  Steven W. Brown,et al.  Correction of Stray Light In Spectroradiometers and Imaging Instruments | NIST , 2007 .

[13]  Wout Verhoef,et al.  The FLuorescence EXplorer Mission Concept—ESA’s Earth Explorer 8 , 2017, IEEE Transactions on Geoscience and Remote Sensing.

[14]  C. Frankenberg,et al.  Solar Induced Chlorophyll Fluorescence: Origins, Relation to Photosynthesis and Retrieval , 2018 .

[15]  J. Flexas,et al.  Terrestrial Photosynthesis in a Changing Environment: Remote sensing of photosynthesis , 2012 .

[16]  C. Frankenberg,et al.  PhotoSpec: A new instrument to measure spatially distributed red and far-red Solar-Induced Chlorophyll Fluorescence , 2018, Remote Sensing of Environment.

[17]  M. S. Moran,et al.  Global and time-resolved monitoring of crop photosynthesis with chlorophyll fluorescence , 2014, Proceedings of the National Academy of Sciences.

[18]  F. Franck,et al.  Resolution of the Photosystem I and Photosystem II contributions to chlorophyll fluorescence of intact leaves at room temperature. , 2002, Biochimica et biophysica acta.

[19]  Christian Frankenberg,et al.  Disentangling chlorophyll fluorescence from atmospheric scattering effects in O2 A‐band spectra of reflected sun‐light , 2011 .

[20]  P. Cox,et al.  Observing terrestrial ecosystems and the carbon cycle from space , 2015, Global change biology.

[21]  Ismael Moya,et al.  An Instrument for the Measurement of Sunlight Excited Plant Fluorescence , 1998 .

[22]  H. Walz Linking chlorophyll a fluorescence to photosynthesis for remote sensing applications: mechanisms and challenges , 2014 .

[23]  I. Mammarella,et al.  Solar‐induced chlorophyll fluorescence is strongly correlated with terrestrial photosynthesis for a wide variety of biomes: First global analysis based on OCO‐2 and flux tower observations , 2018, Global change biology.

[24]  Pierre Friedlingstein,et al.  Uncertainties in CMIP5 Climate Projections due to Carbon Cycle Feedbacks , 2014 .

[25]  D. Baldocchi,et al.  Measuring fluxes of trace gases and energy between ecosystems and the atmosphere – the state and future of the eddy covariance method , 2014, Global change biology.

[26]  J. A. Plascyk The MK II Fraunhofer Line Discriminator (FLD-II) for Airborne and Orbital Remote Sensing of Solar-Stimulated Luminescence , 1975 .

[27]  S. Long,et al.  Gas exchange measurements, what can they tell us about the underlying limitations to photosynthesis? Procedures and sources of error. , 2003, Journal of experimental botany.

[28]  Yuqin Zong,et al.  Simple spectral stray light correction method for array spectroradiometers. , 2006, Applied optics.