Unsupervised pattern discovery in human chromatin structure through genomic segmentation
暂无分享,去创建一个
Jie Wang | Jeff A. Bilmes | William Stafford Noble | Zhiping Weng | Orion J. Buske | Michael M. Hoffman
[1] Amos Tanay,et al. Spatial Clustering of Multivariate Genomic and Epigenomic Information , 2009, RECOMB.
[2] Xin Chen,et al. TRANSFAC: an integrated system for gene expression regulation , 2000, Nucleic Acids Res..
[3] Manolis Kellis,et al. Discovery and characterization of chromatin states for systematic annotation of the human genome , 2010, Nature Biotechnology.
[4] Nancy R. Zhang,et al. Subsampling methods for genomic inference , 2010, 1101.0947.
[5] N. L. Johnson,et al. Systems of frequency curves generated by methods of translation. , 1949, Biometrika.
[6] Bing Ren,et al. ChromaSig: A Probabilistic Approach to Finding Common Chromatin Signatures in the Human Genome , 2008, PLoS Comput. Biol..
[7] Lovelace J. Luquette,et al. Comprehensive analysis of the chromatin landscape in Drosophila , 2010, Nature.
[8] William Stafford Noble,et al. FIMO: scanning for occurrences of a given motif , 2011, Bioinform..
[9] William Noble Grundy,et al. Meta-MEME: motif-based hidden Markov models of protein families , 1997, Comput. Appl. Biosci..
[10] William Stafford Noble,et al. Unsupervised segmentation of continuous genomic data , 2007, Bioinform..
[11] D. Haussler,et al. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. , 2005, Genome research.
[12] Chandra Erdman,et al. A fast Bayesian change point analysis for the segmentation of microarray data , 2008, Bioinform..
[13] María Martín,et al. Ongoing and future developments at the Universal Protein Resource , 2010, Nucleic Acids Res..
[14] J.A. Bilmes,et al. Graphical model architectures for speech recognition , 2005, IEEE Signal Processing Magazine.
[15] David Haussler,et al. ENCODE whole-genome data in the UCSC genome browser (2011 update) , 2010, Nucleic Acids Res..
[16] Andrew J. Viterbi,et al. Error bounds for convolutional codes and an asymptotically optimum decoding algorithm , 1967, IEEE Trans. Inf. Theory.
[17] J. Harrow,et al. GENCODE: producing a reference annotation for ENCODE , 2006, Genome Biology.
[18] Mary Goldman,et al. The UCSC Genome Browser database: update 2011 , 2010, Nucleic Acids Res..
[19] D. Rubin,et al. Maximum likelihood from incomplete data via the EM - algorithm plus discussions on the paper , 1977 .
[20] Guillaume J. Filion,et al. Systematic Protein Location Mapping Reveals Five Principal Chromatin Types in Drosophila Cells , 2010, Cell.
[21] Mark Goadrich,et al. The relationship between Precision-Recall and ROC curves , 2006, ICML.
[22] Dustin E. Schones,et al. Characterization of human epigenomes. , 2009, Current opinion in genetics & development.
[23] Piero Carninci,et al. CAGE (cap analysis of gene expression): a protocol for the detection of promoter and transcriptional networks. , 2012, Methods in molecular biology.
[24] Raymond K. Auerbach,et al. A User's Guide to the Encyclopedia of DNA Elements (ENCODE) , 2011, PLoS biology.
[25] Wyeth W. Wasserman,et al. JASPAR: an open-access database for eukaryotic transcription factor binding profiles , 2004, Nucleic Acids Res..
[26] Jeff A. Bilmes,et al. Transmembrane Topology and Signal Peptide Prediction Using Dynamic Bayesian Networks , 2008, PLoS Comput. Biol..
[27] Francesca Chiaromonte,et al. Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences. , 2005, Genome research.
[28] Jeff A. Bilmes,et al. Dynamic Bayesian Multinets , 2000, UAI.
[29] William Stafford Noble,et al. The Genomedata format for storing large-scale functional genomics data , 2010, Bioinform..
[30] William Stafford Noble,et al. Exploratory analysis of genomic segmentations with Segtools , 2011, BMC Bioinformatics.
[31] Jeff A. Bilmes,et al. On Triangulating Dynamic Graphical Models , 2002, UAI.
[32] Frederick P. Roth,et al. Next generation software for functional trend analysis , 2009, Bioinform..